Wall clock time and date at job start Tue Mar 31 2020 11:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46857 * 2 1 4 4 C 1.35402 * 124.77734 * 265.00178 * 3 2 1 5 5 C 1.36479 * 109.75972 * 180.02562 * 4 3 2 6 6 C 1.46740 * 126.77669 * 179.97438 * 5 4 3 7 7 O 1.21601 * 119.99911 * 179.97438 * 6 5 4 8 8 O 1.34847 * 120.00316 * 359.97438 * 6 5 4 9 9 C 1.45191 * 117.00115 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47218 * 180.02562 * 9 8 6 11 11 O 1.21293 * 119.99829 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00353 * 180.02562 * 10 9 8 13 13 C 1.37088 * 120.00241 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00191 * 359.97438 * 13 12 10 15 15 C 1.38954 * 120.00147 * 179.97438 * 13 12 10 16 16 N 1.31413 * 120.00065 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99995 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47214 * 89.99891 * 17 15 13 19 19 H 1.48494 * 109.47335 * 210.00136 * 17 15 13 20 20 H 1.48503 * 109.46948 * 330.00140 * 17 15 13 21 21 C 1.47467 * 106.44206 * 359.74516 * 5 4 3 22 22 C 1.39260 * 134.00241 * 179.50050 * 21 5 4 23 23 C 1.37770 * 119.67231 * 180.47635 * 22 21 5 24 24 C 1.38751 * 120.29263 * 0.25915 * 23 22 21 25 25 C 1.37758 * 120.63751 * 359.97438 * 24 23 22 26 26 C 1.37982 * 124.77068 * 85.00094 * 3 2 1 27 27 H 1.08993 * 109.47088 * 299.99531 * 1 2 3 28 28 H 1.08996 * 109.47187 * 60.00172 * 1 2 3 29 29 H 1.09000 * 109.46604 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46899 * 240.00581 * 2 1 3 31 31 H 1.08996 * 109.47709 * 120.00387 * 2 1 3 32 32 H 1.07995 * 125.12240 * 0.02562 * 4 3 2 33 33 H 1.09010 * 109.46925 * 299.99927 * 9 8 6 34 34 H 1.09002 * 109.47402 * 59.99466 * 9 8 6 35 35 H 0.97003 * 119.99898 * 359.97438 * 12 10 9 36 36 H 0.97002 * 119.99452 * 180.02562 * 16 15 13 37 37 H 1.08002 * 120.16619 * 0.75837 * 22 21 5 38 38 H 1.07994 * 119.85312 * 180.28154 * 23 22 21 39 39 H 1.08000 * 119.67456 * 180.02562 * 24 23 22 40 40 H 1.08001 * 120.03690 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3670 2.0771 -1.1079 5 6 2.7779 3.3300 -0.7556 6 6 3.2374 4.3906 -1.6596 7 8 3.5766 5.4682 -1.2099 8 8 3.2835 4.1702 -2.9892 9 6 3.7478 5.2644 -3.8230 10 6 3.7309 4.8370 -5.2680 11 8 3.3641 3.7198 -5.5657 12 7 4.1243 5.6957 -6.2294 13 6 4.1094 5.3067 -7.5439 14 1 3.7829 4.3120 -7.8090 15 6 4.5145 6.1922 -8.5352 16 7 4.4998 5.8194 -9.7952 17 14 5.0787 7.9129 -8.0767 18 1 6.5435 7.9049 -7.8322 19 1 4.7674 8.8483 -9.1872 20 1 4.3739 8.3535 -6.8461 21 6 2.6635 3.4093 0.7125 22 6 2.9339 4.4013 1.6517 23 6 2.7220 4.1498 2.9896 24 6 2.2467 2.9134 3.4026 25 6 1.9797 1.9216 2.4846 26 6 2.1874 2.1561 1.1291 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.3263 1.6979 -2.1183 33 1 3.0919 6.1251 -3.6913 34 1 4.7639 5.5346 -3.5354 35 1 4.4180 6.5890 -5.9913 36 1 4.7829 6.4375 -10.4871 37 1 3.3036 5.3646 1.3326 38 1 2.9265 4.9185 3.7201 39 1 2.0839 2.7271 4.4539 40 1 1.6104 0.9626 2.8169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731238943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:02 Heat of formation + Delta-G solvation = -54.535469 kcal Electronic energy + Delta-G solvation = -24988.001249 eV Core-core repulsion = 21154.769167 eV Total energy + Delta-G solvation = -3833.232082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78534 -39.84789 -38.20581 -37.45706 -35.90321 -34.22610 -34.01848 -31.76788 -31.27929 -29.58620 -29.40031 -28.15378 -24.89168 -24.15316 -23.25692 -22.50956 -21.11660 -19.96183 -19.58549 -18.53853 -17.85911 -17.08196 -16.40466 -16.23446 -16.00874 -15.60224 -15.44488 -15.23545 -14.87635 -14.55288 -14.17644 -13.98346 -13.78187 -13.50719 -13.11159 -12.92702 -12.83814 -12.56115 -12.34308 -12.20588 -12.06525 -11.92102 -11.67325 -11.56248 -11.23227 -11.17383 -10.62010 -10.38054 -10.31605 -10.02282 -9.86199 -9.64292 -8.62172 -8.49184 -8.26197 -7.95400 -6.36749 -3.89322 0.78107 1.32165 1.76950 2.32543 2.83031 3.02018 3.06575 3.14924 3.18825 3.60512 3.75813 4.06707 4.20419 4.33868 4.52327 4.55027 4.58412 4.78441 4.82480 4.89284 4.97346 5.15040 5.20394 5.25256 5.31766 5.39421 5.43446 5.49743 5.63885 5.64221 5.64777 5.73994 5.86074 6.19367 6.35508 6.45252 6.47282 6.70333 6.86602 6.92499 7.48567 8.02007 8.07894 8.51379 8.86573 9.33184 9.69530 10.75604 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.002669 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.606819 B =10486.663950 C =11638.511453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 N -0.469 5.469 4 C 0.148 3.852 5 C -0.222 4.222 6 C 0.536 3.464 7 O -0.520 6.520 8 O -0.327 6.327 9 C 0.061 3.939 10 C 0.450 3.550 11 O -0.559 6.559 12 N -0.581 5.581 13 C -0.307 4.307 14 H 0.122 0.878 15 C 0.044 3.956 16 N -0.876 5.876 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.267 1.267 21 C -0.058 4.058 22 C -0.067 4.067 23 C -0.140 4.140 24 C -0.103 4.103 25 C -0.123 4.123 26 C 0.086 3.914 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.191 0.809 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.373 0.627 36 H 0.275 0.725 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 -8.115 25.635 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.150 5.150 4 C 0.016 3.984 5 C -0.231 4.231 6 C 0.382 3.618 7 O -0.411 6.411 8 O -0.242 6.242 9 C -0.017 4.017 10 C 0.235 3.765 11 O -0.441 6.441 12 N -0.221 5.221 13 C -0.435 4.435 14 H 0.139 0.861 15 C -0.159 4.159 16 N -0.516 5.516 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.193 1.193 21 C -0.061 4.061 22 C -0.085 4.085 23 C -0.159 4.159 24 C -0.123 4.123 25 C -0.144 4.144 26 C -0.017 4.017 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.208 0.792 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.206 0.794 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.901 -8.840 25.295 27.438 hybrid contribution 0.510 1.549 0.052 1.631 sum -5.391 -7.291 25.348 26.921 Atomic orbital electron populations 1.22205 0.94137 1.03242 1.03527 1.21931 0.95741 0.79567 1.04868 1.43943 1.53887 1.12461 1.04730 1.22487 0.93144 0.90763 0.92045 1.18984 1.18542 0.94336 0.91226 1.20001 0.74545 0.86189 0.81021 1.90804 1.46673 1.26018 1.77585 1.86597 1.77751 1.42532 1.17298 1.22692 1.00949 0.88302 0.89762 1.19226 0.85182 0.86893 0.85198 1.90582 1.50673 1.20418 1.82425 1.42037 1.59520 1.13518 1.07002 1.19415 1.42505 1.02650 0.78967 0.86050 1.25036 0.97417 0.98507 0.94973 1.69617 1.46195 1.36426 0.99343 0.86678 0.79786 0.84206 0.78855 1.19415 1.20000 1.19284 1.18685 1.02760 0.93695 0.91001 1.20712 0.97539 0.98637 0.91629 1.20975 1.02151 0.97385 0.95422 1.20807 0.99539 0.93066 0.98842 1.19975 1.05201 1.00259 0.88936 1.18228 1.04091 0.90879 0.88488 0.91820 0.91424 0.90457 0.88345 0.89163 0.79185 0.89473 0.89448 0.79361 0.91436 0.84881 0.85734 0.85665 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.10 0.59 6.67 -4.04 -0.03 0.57 16 3 N -0.47 -4.62 2.74 -114.21 -0.31 -4.93 16 4 C 0.15 1.75 11.04 -16.61 -0.18 1.57 16 5 C -0.22 -3.28 6.27 -103.34 -0.65 -3.92 16 6 C 0.54 9.28 7.93 34.17 0.27 9.55 16 7 O -0.52 -9.72 15.95 -19.34 -0.31 -10.02 16 8 O -0.33 -6.12 9.58 -47.58 -0.46 -6.57 16 9 C 0.06 1.13 5.96 36.01 0.21 1.35 16 10 C 0.45 10.52 7.86 -10.99 -0.09 10.43 16 11 O -0.56 -15.27 16.08 -14.11 -0.23 -15.50 16 12 N -0.58 -13.92 5.09 -10.97 -0.06 -13.98 16 13 C -0.31 -8.63 10.16 -14.94 -0.15 -8.78 16 14 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 15 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 16 N -0.88 -25.29 13.96 55.50 0.77 -24.51 16 17 Si 0.88 19.23 27.74 -169.99 -4.71 14.52 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 21 C -0.06 -0.79 6.27 -104.95 -0.66 -1.45 16 22 C -0.07 -0.84 9.85 -39.37 -0.39 -1.23 16 23 C -0.14 -1.39 10.03 -39.56 -0.40 -1.78 16 24 C -0.10 -0.89 10.01 -39.57 -0.40 -1.29 16 25 C -0.12 -1.12 9.97 -39.43 -0.39 -1.51 16 26 C 0.09 0.97 6.79 -83.96 -0.57 0.40 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.45 8.11 -51.93 -0.42 0.03 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 36 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.13 1.75 7.45 -52.49 -0.39 1.36 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -35.22 354.51 -7.92 -43.14 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.83 Total: 8.06 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -3.13 Total: 4.45 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.41 Total: -43.42 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.99 Total: -32.10 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.22 -7.92 -43.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.396 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds