Wall clock time and date at job start Tue Mar 31 2020 10:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47549 * 2 1 4 4 C 1.50704 * 109.46954 * 239.99714 * 2 1 3 5 5 H 1.08002 * 120.00117 * 240.00692 * 4 2 1 6 6 C 1.37879 * 119.99531 * 60.00051 * 4 2 1 7 7 N 1.31508 * 120.00282 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99667 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47063 * 60.00177 * 8 6 4 10 10 H 1.48494 * 109.47117 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47293 * 300.00414 * 8 6 4 12 12 O 1.45203 * 109.47080 * 120.00186 * 2 1 3 13 13 C 1.34226 * 116.99798 * 269.99248 * 12 2 1 14 14 O 1.20824 * 119.99959 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99900 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.46912 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 13 18 18 N 1.30380 * 126.19045 * 90.02454 * 17 16 15 19 19 N 1.28662 * 109.52623 * 179.97438 * 18 17 16 20 20 C 1.31230 * 109.24968 * 0.02562 * 19 18 17 21 21 C 1.47851 * 126.38156 * 179.97438 * 20 19 18 22 22 C 1.39552 * 120.14054 * 179.69618 * 21 20 19 23 23 C 1.37973 * 119.84687 * 179.72273 * 22 21 20 24 24 C 1.38349 * 120.14567 * 0.58122 * 23 22 21 25 25 C 1.38352 * 120.28773 * 359.69442 * 24 23 22 26 26 C 1.37967 * 120.14555 * 0.02562 * 25 24 23 27 27 O 1.34410 * 126.18147 * 269.71098 * 17 16 15 28 28 H 1.09009 * 109.46551 * 300.00335 * 1 2 3 29 29 H 1.08998 * 109.47179 * 59.99764 * 1 2 3 30 30 H 1.08991 * 109.47446 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00298 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47152 * 60.00249 * 15 13 12 33 33 H 1.09001 * 109.46980 * 300.00350 * 15 13 12 34 34 H 1.09001 * 109.47194 * 299.99742 * 16 15 13 35 35 H 1.08992 * 109.47399 * 59.99914 * 16 15 13 36 36 H 1.07995 * 120.08051 * 0.02562 * 22 21 20 37 37 H 1.07996 * 119.92390 * 180.29617 * 23 22 21 38 38 H 1.08001 * 119.85729 * 179.71982 * 24 23 22 39 39 H 1.08001 * 119.92515 * 180.02562 * 25 24 23 40 40 H 1.08001 * 120.07101 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5887 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3211 -1.1205 -4.0080 9 1 1.8255 -2.5204 -4.0077 10 1 1.8267 -0.4201 -5.2205 11 1 3.8061 -1.1212 -4.0083 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2810 14 8 1.9975 1.2517 2.2505 15 6 2.7183 -0.5773 3.5494 16 6 2.8626 0.4888 4.6373 17 6 3.3643 -0.1524 5.9055 18 7 4.6126 -0.3039 6.2499 19 7 4.6751 -0.8896 7.3938 20 6 3.4589 -1.1342 7.8216 21 6 3.0926 -1.7946 9.0927 22 6 1.7498 -1.9842 9.4223 23 6 1.4149 -2.6064 10.6074 24 6 2.4066 -3.0310 11.4736 25 6 3.7395 -2.8408 11.1554 26 6 4.0880 -2.2253 9.9708 27 8 2.6056 -0.6662 6.8889 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.7094 1.1618 -3.4844 32 1 3.6872 -1.0410 3.3639 33 1 2.0087 -1.3369 3.8774 34 1 3.5720 1.2487 4.3096 35 1 1.8937 0.9522 4.8227 36 1 0.9747 -1.6492 8.7491 37 1 0.3763 -2.7580 10.8615 38 1 2.1391 -3.5134 12.4022 39 1 4.5089 -3.1750 11.8357 40 1 5.1289 -2.0778 9.7234 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733708198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:39 Heat of formation + Delta-G solvation = -32.396073 kcal Electronic energy + Delta-G solvation = -24327.338821 eV Core-core repulsion = 20495.066775 eV Total energy + Delta-G solvation = -3832.272046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.38355 -39.69420 -39.55154 -36.40513 -36.09723 -34.47114 -33.30302 -32.60868 -31.52224 -29.95817 -29.30147 -26.11542 -25.33447 -24.64382 -23.32469 -22.25215 -22.02885 -21.32545 -19.62664 -18.29827 -17.66136 -17.17724 -16.78582 -16.59597 -16.27738 -15.72072 -15.54651 -15.23541 -14.55524 -14.46462 -14.12828 -13.97584 -13.78938 -13.49675 -13.00782 -12.68548 -12.58984 -12.19623 -12.14556 -12.06221 -11.83448 -11.67292 -11.47745 -11.24626 -11.09088 -11.07517 -10.87890 -10.55835 -10.43411 -10.31141 -9.78218 -9.59568 -9.51977 -8.96725 -8.92472 -8.51998 -6.21126 -4.28309 0.07772 0.84684 1.31009 1.86901 2.20163 2.86268 3.24848 3.25747 3.28437 3.29324 3.34098 3.68244 4.08400 4.32161 4.35551 4.41172 4.58856 4.62424 4.69088 4.83299 4.96186 5.04789 5.10651 5.11953 5.13151 5.33175 5.43183 5.49673 5.66487 5.71438 5.78274 5.87392 5.88858 5.94393 6.33025 6.58658 6.83684 6.85765 7.10243 7.55716 7.68004 7.88021 8.03581 8.09627 8.54456 8.82728 9.37193 10.86205 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.029770 B = 0.001998 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.325265 B =14007.869916 C =14120.186381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.048 0.952 4 C -0.523 4.523 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.354 6.354 13 C 0.458 3.542 14 O -0.521 6.521 15 C -0.115 4.115 16 C -0.014 4.014 17 C 0.180 3.820 18 N -0.279 5.279 19 N -0.273 5.273 20 C 0.200 3.800 21 C -0.022 4.022 22 C -0.084 4.084 23 C -0.121 4.121 24 C -0.097 4.097 25 C -0.121 4.121 26 C -0.068 4.068 27 O -0.217 6.217 28 H 0.016 0.984 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.267 0.733 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 -6.586 27.068 27.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.561 4.561 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.270 6.270 13 C 0.300 3.700 14 O -0.411 6.411 15 C -0.154 4.154 16 C -0.052 4.052 17 C -0.030 4.030 18 N -0.126 5.126 19 N -0.121 5.121 20 C -0.008 4.008 21 C -0.024 4.024 22 C -0.104 4.104 23 C -0.139 4.139 24 C -0.115 4.115 25 C -0.139 4.139 26 C -0.087 4.087 27 O -0.097 6.097 28 H 0.035 0.965 29 H 0.118 0.882 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.425 -6.042 26.763 27.543 hybrid contribution -1.081 -0.327 -0.867 1.424 sum 1.343 -6.369 25.896 26.702 Atomic orbital electron populations 1.22168 0.97487 1.00146 1.01471 1.20684 0.91432 0.93982 0.77630 0.93382 1.20985 1.32662 1.13558 0.88863 0.91316 1.24891 0.94898 0.95100 0.99094 1.69880 1.35963 1.22480 1.24350 0.86314 0.79255 0.79516 0.80938 1.19934 1.21021 1.19943 1.86485 1.75552 1.43619 1.21317 1.22928 0.75048 0.85895 0.86111 1.90623 1.48923 1.16778 1.84825 1.21264 1.05015 0.98651 0.90477 1.20047 1.04980 0.96952 0.83227 1.28069 0.85777 0.96778 0.92394 1.74467 1.17177 1.14631 1.06314 1.74714 1.18957 1.13384 1.05002 1.25451 0.84090 0.98800 0.92420 1.17246 0.94547 1.01971 0.88644 1.21321 0.94601 0.97184 0.97287 1.21127 1.00169 0.98683 0.93894 1.21438 0.92922 0.97787 0.99392 1.21150 0.96741 0.99383 0.96631 1.21229 0.99506 0.95339 0.92662 1.84843 1.39840 1.58391 1.26604 0.96493 0.88168 0.94408 0.92298 0.87059 0.87656 0.85682 0.87213 0.84880 0.84926 0.85227 0.84788 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.33 37.16 0.35 -3.50 16 2 C 0.21 5.67 2.56 -27.88 -0.07 5.60 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 4 C -0.52 -14.54 8.90 -34.44 -0.31 -14.84 16 5 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 8 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 O -0.35 -8.13 9.86 -39.25 -0.39 -8.52 16 13 C 0.46 8.83 7.93 36.01 0.29 9.12 16 14 O -0.52 -11.31 15.20 -18.75 -0.28 -11.59 16 15 C -0.12 -1.55 5.79 -27.88 -0.16 -1.71 16 16 C -0.01 -0.16 5.13 -27.88 -0.14 -0.31 16 17 C 0.18 2.32 7.73 -12.89 -0.10 2.22 16 18 N -0.28 -4.12 12.22 32.58 0.40 -3.72 16 19 N -0.27 -3.87 11.92 32.07 0.38 -3.49 16 20 C 0.20 2.46 7.99 -13.88 -0.11 2.34 16 21 C -0.02 -0.21 5.87 -104.98 -0.62 -0.83 16 22 C -0.08 -0.65 9.73 -39.19 -0.38 -1.04 16 23 C -0.12 -0.70 10.03 -39.64 -0.40 -1.10 16 24 C -0.10 -0.50 10.04 -39.50 -0.40 -0.89 16 25 C -0.12 -0.70 10.03 -39.64 -0.40 -1.10 16 26 C -0.07 -0.54 9.70 -39.19 -0.38 -0.92 16 27 O -0.22 -2.70 10.67 4.02 0.04 -2.66 16 28 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 29 H 0.10 2.67 6.07 -51.93 -0.32 2.35 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.13 1.50 8.10 -51.93 -0.42 1.08 16 35 H 0.11 1.22 8.10 -51.93 -0.42 0.79 16 36 H 0.13 0.93 7.94 -52.49 -0.42 0.52 16 37 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 38 H 0.13 0.35 8.06 -52.49 -0.42 -0.08 16 39 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 40 H 0.14 1.09 7.87 -52.49 -0.41 0.67 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -32.51 356.20 -6.66 -39.17 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.86 Total: -0.76 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.92 Total: -5.35 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 1.41 Total: -31.61 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.63 Total: -22.77 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.51 -6.66 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733708198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.775 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds