Wall clock time and date at job start Tue Mar 31 2020 10:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47549 * 2 1 4 4 C 1.50704 * 109.46954 * 239.99714 * 2 1 3 5 5 H 1.08002 * 120.00117 * 240.00692 * 4 2 1 6 6 C 1.37879 * 119.99531 * 60.00051 * 4 2 1 7 7 N 1.31508 * 120.00282 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99667 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47063 * 60.00177 * 8 6 4 10 10 H 1.48494 * 109.47117 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47293 * 300.00414 * 8 6 4 12 12 O 1.45203 * 109.47080 * 120.00186 * 2 1 3 13 13 C 1.34226 * 116.99798 * 269.99248 * 12 2 1 14 14 O 1.20824 * 119.99959 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99900 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.46912 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 13 18 18 N 1.30380 * 126.19045 * 90.02454 * 17 16 15 19 19 N 1.28662 * 109.52623 * 179.97438 * 18 17 16 20 20 C 1.31230 * 109.24968 * 0.02562 * 19 18 17 21 21 C 1.47851 * 126.38156 * 179.97438 * 20 19 18 22 22 C 1.39552 * 120.14054 * 179.69618 * 21 20 19 23 23 C 1.37973 * 119.84687 * 179.72273 * 22 21 20 24 24 C 1.38349 * 120.14567 * 0.58122 * 23 22 21 25 25 C 1.38352 * 120.28773 * 359.69442 * 24 23 22 26 26 C 1.37967 * 120.14555 * 0.02562 * 25 24 23 27 27 O 1.34410 * 126.18147 * 269.71098 * 17 16 15 28 28 H 1.09009 * 109.46551 * 300.00335 * 1 2 3 29 29 H 1.08998 * 109.47179 * 59.99764 * 1 2 3 30 30 H 1.08991 * 109.47446 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00298 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47152 * 60.00249 * 15 13 12 33 33 H 1.09001 * 109.46980 * 300.00350 * 15 13 12 34 34 H 1.09001 * 109.47194 * 299.99742 * 16 15 13 35 35 H 1.08992 * 109.47399 * 59.99914 * 16 15 13 36 36 H 1.07995 * 120.08051 * 0.02562 * 22 21 20 37 37 H 1.07996 * 119.92390 * 180.29617 * 23 22 21 38 38 H 1.08001 * 119.85729 * 179.71982 * 24 23 22 39 39 H 1.08001 * 119.92515 * 180.02562 * 25 24 23 40 40 H 1.08001 * 120.07101 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5887 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3211 -1.1205 -4.0080 9 1 1.8255 -2.5204 -4.0077 10 1 1.8267 -0.4201 -5.2205 11 1 3.8061 -1.1212 -4.0083 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0640 2.2810 14 8 1.9975 1.2517 2.2505 15 6 2.7183 -0.5773 3.5494 16 6 2.8626 0.4888 4.6373 17 6 3.3643 -0.1524 5.9055 18 7 4.6126 -0.3039 6.2499 19 7 4.6751 -0.8896 7.3938 20 6 3.4589 -1.1342 7.8216 21 6 3.0926 -1.7946 9.0927 22 6 1.7498 -1.9842 9.4223 23 6 1.4149 -2.6064 10.6074 24 6 2.4066 -3.0310 11.4736 25 6 3.7395 -2.8408 11.1554 26 6 4.0880 -2.2253 9.9708 27 8 2.6056 -0.6662 6.8889 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.7094 1.1618 -3.4844 32 1 3.6872 -1.0410 3.3639 33 1 2.0087 -1.3369 3.8774 34 1 3.5720 1.2487 4.3096 35 1 1.8937 0.9522 4.8227 36 1 0.9747 -1.6492 8.7491 37 1 0.3763 -2.7580 10.8615 38 1 2.1391 -3.5134 12.4022 39 1 4.5089 -3.1750 11.8357 40 1 5.1289 -2.0778 9.7234 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733708198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:38 Heat of formation + Delta-G solvation = -53.876509 kcal Electronic energy + Delta-G solvation = -24328.270283 eV Core-core repulsion = 20495.066775 eV Total energy + Delta-G solvation = -3833.203508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.36291 -41.35793 -40.07710 -37.82660 -37.39729 -35.60242 -35.32460 -33.38685 -32.01486 -31.74217 -30.43685 -27.49102 -27.18833 -25.47083 -24.24862 -23.34517 -22.73368 -22.69043 -21.29120 -19.14773 -18.88348 -18.54646 -18.45751 -17.64932 -17.32707 -17.16059 -16.76840 -16.35519 -15.93417 -15.36372 -15.21757 -14.86410 -14.69041 -14.44670 -14.30417 -14.03303 -13.85587 -13.66749 -13.40617 -13.18835 -13.12643 -12.97809 -12.81803 -12.70966 -12.41128 -12.38177 -12.21031 -12.17608 -11.96877 -11.60008 -11.48562 -11.29264 -10.99665 -10.59235 -10.01234 -9.64362 -8.28703 -6.45299 -0.65974 0.36105 0.48759 0.93527 1.28130 1.29238 1.42503 1.45744 1.53814 1.95996 2.39074 2.63916 2.76044 3.02018 3.17005 3.49745 3.61834 3.91642 3.92699 3.98983 4.05663 4.10272 4.19741 4.28581 4.41077 4.42850 4.54121 4.55623 4.65950 4.78480 4.79420 4.82546 4.84354 5.03665 5.17363 5.33823 5.40553 5.48162 5.49066 5.64102 5.88130 5.92579 6.08572 6.58964 6.92588 7.04808 7.26231 8.78499 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.029770 B = 0.001998 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.325265 B =14007.869916 C =14120.186381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.216 3.784 3 H 0.012 0.988 4 C -0.550 4.550 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.982 3.018 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.269 1.269 12 O -0.363 6.363 13 C 0.454 3.546 14 O -0.547 6.547 15 C -0.099 4.099 16 C -0.005 4.005 17 C 0.182 3.818 18 N -0.304 5.304 19 N -0.305 5.305 20 C 0.212 3.788 21 C -0.055 4.055 22 C -0.091 4.091 23 C -0.121 4.121 24 C -0.086 4.086 25 C -0.121 4.121 26 C -0.078 4.078 27 O -0.218 6.218 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.271 0.729 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -8.447 28.907 30.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.029 0.971 4 C -0.587 4.587 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.805 3.195 9 H -0.189 1.189 10 H -0.202 1.202 11 H -0.194 1.194 12 O -0.279 6.279 13 C 0.299 3.701 14 O -0.439 6.439 15 C -0.138 4.138 16 C -0.043 4.043 17 C -0.029 4.029 18 N -0.151 5.151 19 N -0.152 5.152 20 C 0.005 3.995 21 C -0.056 4.056 22 C -0.111 4.111 23 C -0.139 4.139 24 C -0.104 4.104 25 C -0.138 4.138 26 C -0.097 4.097 27 O -0.098 6.098 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.177 0.823 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.964 -7.905 28.633 29.769 hybrid contribution -0.963 0.239 -1.225 1.576 sum 1.001 -7.667 27.408 28.478 Atomic orbital electron populations 1.21986 0.96590 1.00445 1.01025 1.20377 0.92136 0.92192 0.79010 0.97052 1.21279 1.33471 1.13952 0.90035 0.91490 1.25814 0.94754 0.95700 1.02117 1.69999 1.36503 1.23546 1.25281 0.85253 0.78759 0.78635 0.76885 1.18885 1.20248 1.19433 1.86469 1.76083 1.43833 1.21556 1.23974 0.73968 0.85672 0.86505 1.90611 1.49972 1.18104 1.85175 1.21282 1.05903 0.99091 0.87483 1.19972 1.05568 0.96352 0.82447 1.27996 0.85431 0.96870 0.92620 1.74393 1.18235 1.15434 1.07004 1.74663 1.20054 1.15097 1.05345 1.26064 0.83580 0.97179 0.92695 1.17477 0.95899 1.04032 0.88240 1.21477 0.93802 0.97493 0.98303 1.21483 1.01804 0.97636 0.92977 1.21884 0.92307 0.96159 1.00091 1.21486 0.98034 0.98384 0.95924 1.21345 0.99032 0.95891 0.93475 1.84847 1.39758 1.58546 1.26644 0.95334 0.90140 0.93581 0.91981 0.85794 0.85084 0.85844 0.86090 0.84690 0.82391 0.81995 0.82269 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.19 9.33 71.98 0.67 -6.51 16 2 C 0.22 11.66 2.56 29.85 0.08 11.74 16 3 H 0.01 0.70 7.16 -2.39 -0.02 0.68 16 4 C -0.55 -30.97 8.90 25.60 0.23 -30.74 16 5 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -52.17 11.32 21.45 0.24 -51.93 16 8 Si 0.98 42.71 29.54 68.60 2.03 44.74 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 O -0.36 -16.83 9.86 -51.38 -0.51 -17.34 16 13 C 0.45 17.54 7.93 71.24 0.56 18.10 16 14 O -0.55 -24.14 15.20 21.97 0.33 -23.80 16 15 C -0.10 -2.56 5.79 29.85 0.17 -2.39 16 16 C 0.00 -0.12 5.13 29.85 0.15 0.04 16 17 C 0.18 4.64 7.73 88.33 0.68 5.33 16 18 N -0.30 -9.11 12.22 -165.33 -2.02 -11.13 16 19 N -0.31 -8.84 11.92 -166.30 -1.98 -10.82 16 20 C 0.21 5.25 7.99 87.33 0.70 5.94 16 21 C -0.05 -1.02 5.87 -20.10 -0.12 -1.14 16 22 C -0.09 -1.29 9.73 22.52 0.22 -1.07 16 23 C -0.12 -1.05 10.03 22.23 0.22 -0.83 16 24 C -0.09 -0.58 10.04 22.32 0.22 -0.35 16 25 C -0.12 -1.09 10.03 22.23 0.22 -0.86 16 26 C -0.08 -1.18 9.70 22.52 0.22 -0.97 16 27 O -0.22 -5.35 10.67 -8.52 -0.09 -5.44 16 28 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.08 4.37 6.07 -2.39 -0.01 4.36 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.12 2.96 8.14 -2.39 -0.02 2.95 16 33 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.12 2.95 8.10 -2.39 -0.02 2.93 16 35 H 0.12 2.57 8.10 -2.39 -0.02 2.55 16 36 H 0.14 1.75 7.94 -2.91 -0.02 1.73 16 37 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 38 H 0.16 0.07 8.06 -2.91 -0.02 0.04 16 39 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 40 H 0.13 2.11 7.87 -2.91 -0.02 2.09 16 Total: -1.00 -71.91 356.20 3.75 -68.16 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.06 Total: 9.96 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 4.69 Total: -2.39 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -3.76 Total: -73.88 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -0.26 Total: -46.58 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -71.91 3.75 -68.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733708198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.280 kcal (2) G-P(sol) polarization free energy of solvation -71.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds