Wall clock time and date at job start Tue Mar 31 2020 10:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 89.99935 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00326 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00479 * 8 6 4 12 12 O 1.45194 * 109.47339 * 239.99705 * 2 1 3 13 13 C 1.34235 * 116.99927 * 90.00371 * 12 2 1 14 14 O 1.20821 * 120.00047 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00318 * 180.02562 * 13 12 2 16 16 C 1.52992 * 109.47416 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47195 * 179.97438 * 16 15 13 18 18 N 1.30389 * 126.18224 * 90.02634 * 17 16 15 19 19 N 1.28658 * 109.52072 * 180.02562 * 18 17 16 20 20 C 1.31227 * 109.25407 * 0.02562 * 19 18 17 21 21 C 1.47850 * 126.38274 * 179.97438 * 20 19 18 22 22 C 1.39559 * 120.14508 * 179.69739 * 21 20 19 23 23 C 1.37968 * 119.85573 * 179.72508 * 22 21 20 24 24 C 1.38350 * 120.14245 * 0.57411 * 23 22 21 25 25 C 1.38360 * 120.28653 * 359.69977 * 24 23 22 26 26 C 1.37962 * 120.14609 * 0.02562 * 25 24 23 27 27 O 1.34410 * 126.18942 * 269.71356 * 17 16 15 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.47034 * 299.99883 * 15 13 12 33 33 H 1.09002 * 109.47151 * 59.99000 * 15 13 12 34 34 H 1.08997 * 109.47547 * 299.99956 * 16 15 13 35 35 H 1.09007 * 109.46958 * 59.99639 * 16 15 13 36 36 H 1.08001 * 120.07000 * 0.02562 * 22 21 20 37 37 H 1.08000 * 119.92765 * 180.29616 * 23 22 21 38 38 H 1.07996 * 119.85807 * 179.71909 * 24 23 22 39 39 H 1.07995 * 119.92334 * 180.02562 * 25 24 23 40 40 H 1.08001 * 120.07344 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 8 2.0140 -0.6845 -1.1855 13 6 2.2172 0.0640 -2.2811 14 8 1.9975 1.2517 -2.2506 15 6 2.7184 -0.5772 -3.5494 16 6 2.8626 0.4888 -4.6373 17 6 3.3643 -0.1524 -5.9055 18 7 2.6284 -0.6552 -6.8572 19 7 3.3866 -1.1186 -7.7877 20 6 4.6423 -0.9263 -7.4586 21 6 5.8266 -1.3133 -8.2545 22 6 7.1101 -1.0387 -7.7801 23 6 8.2112 -1.4075 -8.5251 24 6 8.0449 -2.0377 -9.7455 25 6 6.7751 -2.3078 -10.2241 26 6 5.6659 -1.9492 -9.4863 27 8 4.6512 -0.3040 -6.2628 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 0.7081 1.1610 3.4844 32 1 3.6873 -1.0409 -3.3639 33 1 2.0089 -1.3370 -3.8774 34 1 1.8936 0.9521 -4.8228 35 1 3.5719 1.2488 -4.3095 36 1 7.2411 -0.5428 -6.8297 37 1 9.2050 -1.1999 -8.1569 38 1 8.9100 -2.3204 -10.3269 39 1 6.6522 -2.8003 -11.1772 40 1 4.6753 -2.1609 -9.8608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733708199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:41 Heat of formation + Delta-G solvation = -53.943314 kcal Electronic energy + Delta-G solvation = -24332.337933 eV Core-core repulsion = 20499.131528 eV Total energy + Delta-G solvation = -3833.206405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.36402 -41.35863 -40.07795 -37.82797 -37.39882 -35.60303 -35.32574 -33.38750 -32.01634 -31.74290 -30.43671 -27.49442 -27.18890 -25.47104 -24.24948 -23.34542 -22.73616 -22.69326 -21.29106 -19.14826 -18.88569 -18.54071 -18.45677 -17.70539 -17.25834 -17.17671 -16.76833 -16.35388 -15.93410 -15.39962 -15.20067 -14.85365 -14.69528 -14.44864 -14.30446 -14.03484 -13.85818 -13.67037 -13.40260 -13.20491 -13.12002 -12.97261 -12.83256 -12.72229 -12.41206 -12.37564 -12.21117 -12.16105 -11.97152 -11.60224 -11.48851 -11.29251 -10.98703 -10.59971 -10.01430 -9.64339 -8.28837 -6.45473 -0.66150 0.35961 0.48593 0.93816 1.27763 1.29356 1.42355 1.44065 1.55639 1.95938 2.38972 2.63862 2.75879 3.01943 3.16616 3.49850 3.61873 3.91879 3.92542 3.98211 4.05825 4.10031 4.20116 4.28415 4.40907 4.42680 4.53988 4.55450 4.65754 4.78425 4.79535 4.82401 4.84488 5.03512 5.16995 5.33672 5.40420 5.47987 5.49070 5.63705 5.87979 5.92302 6.08425 6.59096 6.92539 7.04525 7.26149 8.78637 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.002095 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.156267 B =13364.430708 C =14125.941431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.216 3.784 3 H 0.013 0.987 4 C -0.548 4.548 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.982 3.018 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.263 1.263 12 O -0.363 6.363 13 C 0.454 3.546 14 O -0.547 6.547 15 C -0.099 4.099 16 C -0.005 4.005 17 C 0.181 3.819 18 N -0.303 5.303 19 N -0.304 5.304 20 C 0.212 3.788 21 C -0.055 4.055 22 C -0.092 4.092 23 C -0.122 4.122 24 C -0.086 4.086 25 C -0.120 4.120 26 C -0.078 4.078 27 O -0.219 6.219 28 H 0.044 0.956 29 H 0.027 0.973 30 H 0.080 0.920 31 H 0.271 0.729 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.134 0.866 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.363 -5.898 -24.474 29.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.163 3.837 3 H 0.030 0.970 4 C -0.586 4.586 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.806 3.194 9 H -0.197 1.197 10 H -0.202 1.202 11 H -0.188 1.188 12 O -0.279 6.279 13 C 0.299 3.701 14 O -0.439 6.439 15 C -0.138 4.138 16 C -0.044 4.044 17 C -0.029 4.029 18 N -0.149 5.149 19 N -0.151 5.151 20 C 0.005 3.995 21 C -0.057 4.057 22 C -0.111 4.111 23 C -0.139 4.139 24 C -0.104 4.104 25 C -0.138 4.138 26 C -0.097 4.097 27 O -0.099 6.099 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.152 0.848 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.178 0.822 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.093 -5.789 -24.943 29.229 hybrid contribution 0.607 0.538 1.719 1.900 sum 14.701 -5.251 -23.225 27.983 Atomic orbital electron populations 1.21998 0.96758 1.00422 1.00993 1.20379 0.92040 0.92240 0.79041 0.96960 1.21302 1.33385 1.13917 0.89972 0.91424 1.25826 0.94756 0.95717 1.02162 1.70011 1.36478 1.23672 1.25222 0.85186 0.78138 0.78909 0.77208 1.19677 1.20155 1.18767 1.86471 1.76069 1.43839 1.21561 1.23975 0.74014 0.85658 0.86469 1.90610 1.49965 1.18136 1.85146 1.21281 1.06008 0.99082 0.87391 1.19971 1.04770 0.96475 0.83133 1.27999 0.76609 0.98838 0.99504 1.74391 1.27697 1.13199 0.99645 1.74657 0.99151 1.19847 1.21438 1.26057 0.96069 0.94337 0.83069 1.17480 0.87197 1.05960 0.95030 1.21477 0.90912 0.98173 1.00570 1.21480 0.99218 0.98269 0.94958 1.21885 0.98445 0.94774 0.95333 1.21489 0.91506 0.99839 1.00975 1.21345 1.01211 0.95377 0.91763 1.84851 1.31534 1.60193 1.33299 0.93643 0.95435 0.90110 0.91994 0.85353 0.85524 0.85637 0.86304 0.84772 0.82435 0.81994 0.82226 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.33 9.33 71.98 0.67 -6.66 16 2 C 0.22 11.67 2.56 29.85 0.08 11.75 16 3 H 0.01 0.75 7.16 -2.39 -0.02 0.74 16 4 C -0.55 -30.75 8.90 25.60 0.23 -30.52 16 5 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -52.13 11.32 21.44 0.24 -51.89 16 8 Si 0.98 42.47 29.54 68.60 2.03 44.50 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 12 O -0.36 -16.83 9.86 -51.46 -0.51 -17.34 16 13 C 0.45 17.54 7.93 71.24 0.56 18.11 16 14 O -0.55 -24.14 15.20 21.98 0.33 -23.80 16 15 C -0.10 -2.56 5.79 29.85 0.17 -2.39 16 16 C -0.01 -0.12 5.13 29.85 0.15 0.03 16 17 C 0.18 4.63 7.73 88.32 0.68 5.32 16 18 N -0.30 -8.98 12.22 -165.33 -2.02 -11.00 16 19 N -0.30 -8.77 11.92 -166.31 -1.98 -10.76 16 20 C 0.21 5.26 7.99 87.33 0.70 5.96 16 21 C -0.05 -1.03 5.87 -20.10 -0.12 -1.15 16 22 C -0.09 -1.33 9.73 22.52 0.22 -1.11 16 23 C -0.12 -1.10 10.03 22.23 0.22 -0.87 16 24 C -0.09 -0.59 10.04 22.33 0.22 -0.37 16 25 C -0.12 -1.09 10.03 22.23 0.22 -0.87 16 26 C -0.08 -1.18 9.70 22.52 0.22 -0.96 16 27 O -0.22 -5.43 10.67 -8.49 -0.09 -5.52 16 28 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 4.43 6.07 -2.38 -0.01 4.41 16 31 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 32 H 0.13 2.81 8.14 -2.38 -0.02 2.79 16 33 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.13 2.94 8.10 -2.39 -0.02 2.92 16 35 H 0.12 2.58 8.10 -2.38 -0.02 2.56 16 36 H 0.13 1.82 7.94 -2.91 -0.02 1.79 16 37 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 38 H 0.16 0.10 8.06 -2.91 -0.02 0.07 16 39 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 40 H 0.13 2.10 7.87 -2.91 -0.02 2.08 16 Total: -1.00 -71.66 356.20 3.75 -67.91 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.06 Total: 10.37 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 4.69 Total: -2.46 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -3.76 Total: -73.65 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -0.26 Total: -46.67 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -71.66 3.75 -67.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733708199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.967 kcal (2) G-P(sol) polarization free energy of solvation -71.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds