Wall clock time and date at job start Tue Mar 31 2020 10:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47753 * 2 1 4 4 C 1.35486 * 124.78694 * 264.98326 * 3 2 1 5 5 C 1.36462 * 109.75371 * 180.02562 * 4 3 2 6 6 C 1.46827 * 126.77599 * 180.02562 * 5 4 3 7 7 O 1.21697 * 120.00034 * 173.26139 * 6 5 4 8 8 N 1.34777 * 119.99962 * 353.26007 * 6 5 4 9 9 C 1.36967 * 119.99720 * 3.04039 * 8 6 5 10 10 H 1.07994 * 120.00271 * 304.72756 * 9 8 6 11 11 C 1.38969 * 119.99532 * 124.73067 * 9 8 6 12 12 N 1.31415 * 120.00325 * 3.67241 * 11 9 8 13 13 Si 1.86800 * 119.99793 * 183.66673 * 11 9 8 14 14 H 1.48498 * 109.47055 * 60.00516 * 13 11 9 15 15 H 1.48497 * 109.47196 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47328 * 300.00240 * 13 11 9 17 17 C 1.46494 * 120.00120 * 183.04628 * 8 6 5 18 18 C 1.50697 * 109.47681 * 94.22679 * 17 8 6 19 19 O 1.20833 * 119.99511 * 0.02562 * 18 17 8 20 20 O 1.34226 * 120.00387 * 180.02562 * 18 17 8 21 21 C 1.47460 * 106.45000 * 359.77644 * 5 4 3 22 22 C 1.39270 * 133.99051 * 179.55149 * 21 5 4 23 23 C 1.37762 * 119.67086 * 180.41422 * 22 21 5 24 24 C 1.38749 * 120.29465 * 0.24119 * 23 22 21 25 25 C 1.37768 * 120.63987 * 359.97438 * 24 23 22 26 26 C 1.37974 * 124.78384 * 84.99390 * 3 2 1 27 27 H 1.09001 * 109.46733 * 300.00314 * 1 2 3 28 28 H 1.09004 * 109.46522 * 59.99805 * 1 2 3 29 29 H 1.08995 * 109.47339 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46733 * 239.99686 * 2 1 3 31 31 H 1.09005 * 109.47079 * 120.00710 * 2 1 3 32 32 H 1.08006 * 125.12284 * 0.02562 * 4 3 2 33 33 H 0.96999 * 120.00602 * 179.97438 * 12 11 9 34 34 H 1.09002 * 109.47210 * 214.22724 * 17 8 6 35 35 H 1.09004 * 109.46863 * 334.22701 * 17 8 6 36 36 H 0.96702 * 117.00152 * 180.02562 * 20 18 17 37 37 H 1.08004 * 120.16348 * 0.67833 * 22 21 5 38 38 H 1.07997 * 119.85209 * 180.27181 * 23 22 21 39 39 H 1.07998 * 119.67906 * 180.02562 * 24 23 22 40 40 H 1.07995 * 120.03708 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3679 2.0774 -1.1085 5 6 2.7787 3.3300 -0.7558 6 6 3.2381 4.3916 -1.6602 7 8 3.4609 5.5065 -1.2261 8 7 3.4129 4.1313 -2.9710 9 6 3.1028 2.8944 -3.4708 10 1 3.5481 2.0103 -3.0390 11 6 2.2152 2.7771 -4.5336 12 7 1.7292 3.8556 -5.1060 13 14 1.7131 1.0863 -5.1489 14 1 1.0574 0.3341 -4.0492 15 1 0.7643 1.2333 -6.2817 16 1 2.9179 0.3473 -5.6044 17 6 3.9347 5.1713 -3.8610 18 6 5.4294 5.0240 -3.9840 19 8 6.0002 4.1405 -3.3894 20 8 6.1266 5.8742 -4.7539 21 6 2.6646 3.4091 0.7122 22 6 2.9344 4.4014 1.6514 23 6 2.7219 4.1503 2.9892 24 6 2.2462 2.9141 3.4023 25 6 1.9794 1.9220 2.4844 26 6 2.1877 2.1561 1.1289 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5140 0.8900 32 1 2.3275 1.6982 -2.1189 33 1 1.1099 3.7738 -5.8481 34 1 3.4774 5.0701 -4.8453 35 1 3.6989 6.1531 -3.4501 36 1 7.0830 5.7396 -4.8018 37 1 3.3044 5.3646 1.3321 38 1 2.9260 4.9192 3.7195 39 1 2.0828 2.7280 4.4535 40 1 1.6098 0.9632 2.8167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737298788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:58 Heat of formation + Delta-G solvation = -69.533073 kcal Electronic energy + Delta-G solvation = -26845.385977 eV Core-core repulsion = 23011.503550 eV Total energy + Delta-G solvation = -3833.882427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.36559 -41.26046 -39.81344 -38.03522 -37.09481 -36.54505 -34.66358 -33.57276 -31.86725 -30.69074 -29.93157 -28.63514 -27.02701 -24.83661 -23.72544 -23.30144 -22.17627 -21.56463 -20.84675 -19.23872 -19.08559 -18.18140 -17.41401 -17.19252 -16.93286 -16.62416 -16.23018 -16.18441 -15.99207 -15.81257 -15.21445 -15.00093 -14.78823 -14.35769 -14.29102 -13.95685 -13.69584 -13.47308 -13.28831 -13.05530 -13.03597 -12.94061 -12.54114 -12.43616 -12.30418 -12.13997 -12.07325 -12.06115 -11.76584 -11.58618 -10.97547 -10.57698 -10.46572 -9.44100 -9.06929 -8.51589 -8.33055 -6.34203 0.19963 0.70627 1.22195 1.31181 1.44011 1.47843 1.55720 1.90618 2.05945 2.29984 2.70162 2.97412 3.03098 3.21641 3.81817 3.82774 4.12863 4.19102 4.21529 4.31866 4.38597 4.43786 4.50464 4.54975 4.64767 4.81545 4.83406 4.88238 4.94713 5.02970 5.03562 5.23409 5.25822 5.37813 5.59823 5.62462 5.72451 5.87672 5.91761 6.02804 6.29540 6.32108 6.48926 7.00915 7.09389 7.48733 7.94473 8.68664 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.006113 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.082201 B = 4579.479428 C = 6428.703399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 N -0.475 5.475 4 C 0.123 3.877 5 C -0.256 4.256 6 C 0.553 3.447 7 O -0.636 6.636 8 N -0.438 5.438 9 C -0.356 4.356 10 H 0.092 0.908 11 C 0.015 3.985 12 N -0.891 5.891 13 Si 0.973 3.027 14 H -0.242 1.242 15 H -0.279 1.279 16 H -0.266 1.266 17 C 0.119 3.881 18 C 0.469 3.531 19 O -0.546 6.546 20 O -0.511 6.511 21 C -0.102 4.102 22 C -0.100 4.100 23 C -0.143 4.143 24 C -0.104 4.104 25 C -0.121 4.121 26 C 0.075 3.925 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.211 0.789 33 H 0.279 0.721 34 H 0.137 0.863 35 H 0.092 0.908 36 H 0.420 0.580 37 H 0.098 0.902 38 H 0.144 0.856 39 H 0.165 0.835 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 -9.672 8.272 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.157 5.157 4 C -0.008 4.008 5 C -0.266 4.266 6 C 0.347 3.653 7 O -0.525 6.525 8 N -0.157 5.157 9 C -0.484 4.484 10 H 0.109 0.891 11 C -0.190 4.190 12 N -0.526 5.526 13 Si 0.794 3.206 14 H -0.166 1.166 15 H -0.204 1.204 16 H -0.191 1.191 17 C -0.006 4.006 18 C 0.312 3.688 19 O -0.436 6.436 20 O -0.323 6.323 21 C -0.107 4.107 22 C -0.119 4.119 23 C -0.162 4.162 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.029 4.029 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.227 0.773 33 H 0.089 0.911 34 H 0.154 0.846 35 H 0.110 0.890 36 H 0.281 0.719 37 H 0.116 0.884 38 H 0.162 0.838 39 H 0.182 0.818 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.913 -9.569 8.463 13.103 hybrid contribution 0.750 0.089 -1.127 1.357 sum -2.164 -9.480 7.336 12.181 Atomic orbital electron populations 1.22172 0.93814 1.04241 1.02183 1.22185 0.96085 0.78242 1.06084 1.44365 1.54137 1.13302 1.03868 1.24005 0.93154 0.91027 0.92647 1.19995 1.18017 0.96230 0.92342 1.18096 0.77689 0.86663 0.82811 1.90534 1.58866 1.25273 1.77782 1.42819 1.55767 1.12142 1.04979 1.19556 1.25830 0.84128 1.18851 0.89070 1.26520 0.94095 1.02364 0.96046 1.69755 1.29635 1.30589 1.22622 0.85308 0.78712 0.77461 0.79072 1.16565 1.20410 1.19096 1.20979 0.84890 0.94314 1.00439 1.24737 0.92351 0.77686 0.74039 1.90605 1.72180 1.35040 1.45784 1.84530 1.27712 1.55547 1.64549 1.19227 1.04187 0.95451 0.91841 1.20678 1.00033 0.97744 0.93438 1.21188 1.02087 0.98967 0.93953 1.21183 0.98677 0.91938 1.00437 1.20381 1.04407 1.01649 0.87634 1.18599 1.04007 0.90439 0.89893 0.92272 0.93728 0.87810 0.87839 0.86924 0.77329 0.91100 0.84551 0.88982 0.71932 0.88368 0.83819 0.81799 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.24 71.98 0.74 -2.40 16 2 C 0.09 1.98 6.67 86.38 0.58 2.56 16 3 N -0.47 -15.68 2.74 -515.19 -1.41 -17.09 16 4 C 0.12 5.11 9.59 83.71 0.80 5.91 16 5 C -0.26 -12.69 6.19 -19.01 -0.12 -12.80 16 6 C 0.55 31.05 7.62 86.49 0.66 31.71 16 7 O -0.64 -38.32 15.69 -4.34 -0.07 -38.38 16 8 N -0.44 -23.51 1.95 -643.95 -1.25 -24.77 16 9 C -0.36 -17.86 6.19 84.07 0.52 -17.34 16 10 H 0.09 4.45 5.94 -2.91 -0.02 4.43 16 11 C 0.01 0.69 5.38 84.93 0.46 1.14 16 12 N -0.89 -44.85 11.40 21.67 0.25 -44.60 16 13 Si 0.97 35.49 29.14 68.60 2.00 37.49 16 14 H -0.24 -7.79 7.11 99.48 0.71 -7.08 16 15 H -0.28 -10.18 7.11 99.48 0.71 -9.47 16 16 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 17 C 0.12 5.97 5.70 85.63 0.49 6.46 16 18 C 0.47 21.69 8.37 71.24 0.60 22.29 16 19 O -0.55 -28.34 17.12 21.94 0.38 -27.96 16 20 O -0.51 -18.06 13.42 -51.38 -0.69 -18.75 16 21 C -0.10 -4.54 6.27 -20.08 -0.13 -4.66 16 22 C -0.10 -4.12 9.86 22.41 0.22 -3.89 16 23 C -0.14 -4.33 10.03 22.28 0.22 -4.10 16 24 C -0.10 -2.53 10.01 22.28 0.22 -2.31 16 25 C -0.12 -3.16 9.97 22.37 0.22 -2.94 16 26 C 0.07 2.63 6.79 38.91 0.26 2.89 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.95 8.11 -2.39 -0.02 1.93 16 31 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.21 8.58 4.16 -2.91 -0.01 8.57 16 33 H 0.28 13.15 8.31 -92.71 -0.77 12.38 16 34 H 0.14 6.90 5.93 -2.39 -0.01 6.88 16 35 H 0.09 4.68 7.26 -2.38 -0.02 4.66 16 36 H 0.42 10.24 9.10 -74.06 -0.67 9.56 16 37 H 0.10 4.48 7.48 -2.91 -0.02 4.46 16 38 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 40 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -75.71 344.68 5.37 -70.34 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: 0.43 Total: 41.21 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 5.75 Total: 22.51 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -2.42 Total: -86.46 kcal Atomic # 8 Polarization: -84.71 SS G_CDS: -0.38 Total: -85.10 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.00 Total: 37.49 kcal Total: -75.71 5.37 -70.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737298788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.806 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds