Wall clock time and date at job start Tue Mar 31 2020 11:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36437 * 126.31784 * 2 1 4 4 O 1.35278 * 125.01718 * 0.02786 * 3 2 1 5 5 N 1.30719 * 109.96880 * 179.77133 * 3 2 1 6 6 C 1.35992 * 109.52852 * 0.41547 * 5 3 2 7 7 C 1.39321 * 133.39685 * 179.88140 * 6 5 3 8 8 C 1.39266 * 119.51636 * 179.73036 * 7 6 5 9 9 C 1.47536 * 119.92665 * 179.97438 * 8 7 6 10 10 O 1.21501 * 119.99757 * 354.77895 * 9 8 7 11 11 O 1.34732 * 120.00332 * 174.77443 * 9 8 7 12 12 C 1.45195 * 117.00377 * 184.89860 * 11 9 8 13 13 C 1.53001 * 109.47527 * 183.71340 * 12 11 9 14 14 C 1.50695 * 115.55164 * 306.32080 * 13 12 11 15 15 H 1.07997 * 120.00432 * 144.81673 * 14 13 12 16 16 C 1.37881 * 119.99711 * 324.82259 * 14 13 12 17 17 N 1.31514 * 119.99996 * 344.89481 * 16 14 13 18 18 Si 1.86797 * 119.99931 * 164.90086 * 16 14 13 19 19 H 1.48500 * 109.47333 * 59.99553 * 18 16 14 20 20 H 1.48497 * 109.47273 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47010 * 299.99436 * 18 16 14 22 22 C 1.53004 * 117.49896 * 160.64690 * 13 12 11 23 23 C 1.53001 * 117.49710 * 91.98835 * 13 12 11 24 24 C 1.40131 * 120.15400 * 359.93222 * 8 7 6 25 25 C 1.36501 * 120.43147 * 0.04806 * 24 8 7 26 26 C 1.38109 * 126.31661 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.46924 * 269.96940 * 1 2 3 28 28 H 1.08993 * 109.47515 * 29.96998 * 1 2 3 29 29 H 1.08998 * 109.47273 * 149.97449 * 1 2 3 30 30 H 0.96698 * 113.99893 * 89.99704 * 4 3 2 31 31 H 1.08007 * 120.24387 * 359.66675 * 7 6 5 32 32 H 1.09001 * 109.47069 * 303.71589 * 12 11 9 33 33 H 1.09005 * 109.47474 * 63.71303 * 12 11 9 34 34 H 0.97000 * 119.99814 * 185.04481 * 17 16 14 35 35 H 1.09000 * 117.49577 * 0.02562 * 22 13 12 36 36 H 1.08995 * 117.49382 * 145.02251 * 22 13 12 37 37 H 1.08998 * 117.50012 * 214.98145 * 23 13 12 38 38 H 1.09009 * 117.49808 * 359.97438 * 23 13 12 39 39 H 1.08000 * 119.78521 * 180.02562 * 24 8 7 40 40 H 1.08004 * 119.91256 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2731 1.0993 0.0000 4 8 1.8402 2.3810 0.0005 5 7 3.5274 0.7314 0.0049 6 6 3.6029 -0.6264 -0.0009 7 6 4.6668 -1.5260 -0.0016 8 6 4.4082 -2.8944 -0.0028 9 6 5.5280 -3.8551 -0.0041 10 8 6.6713 -3.4552 -0.0998 11 8 5.2828 -5.1757 0.1010 12 6 6.4345 -6.0540 0.2031 13 6 5.9655 -7.5103 0.2203 14 6 4.9316 -7.8479 1.2633 15 1 4.1601 -8.5713 1.0447 16 6 4.9705 -7.2331 2.4969 17 7 6.0526 -6.5894 2.8769 18 14 3.4864 -7.3146 3.6283 19 1 3.1818 -8.7333 3.9439 20 1 3.7811 -6.5806 4.8851 21 1 2.3164 -6.6950 2.9554 22 6 6.9938 -8.5878 -0.1299 23 6 5.8802 -8.2408 -1.1213 24 6 3.0869 -3.3611 -0.0020 25 6 2.0430 -2.4817 -0.0010 26 6 2.2830 -1.1128 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5133 29 1 -0.3634 -0.8897 -0.5142 30 1 1.7146 2.7533 0.8841 31 1 5.6846 -1.1648 -0.0021 32 1 7.0906 -5.8937 -0.6524 33 1 6.9771 -5.8362 1.1230 34 1 6.1077 -6.2197 3.7720 35 1 8.0044 -8.2592 -0.3722 36 1 6.9221 -9.5409 0.3939 37 1 5.0766 -8.9659 -1.2494 38 1 6.1578 -7.6838 -2.0163 39 1 2.8932 -4.4236 -0.0026 40 1 1.0279 -2.8506 -0.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:00 Heat of formation + Delta-G solvation = -32.477218 kcal Electronic energy + Delta-G solvation = -25773.668107 eV Core-core repulsion = 21941.392542 eV Total energy + Delta-G solvation = -3832.275565 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.37576 -41.27845 -39.25707 -38.51669 -37.43212 -36.79111 -35.44366 -34.14541 -31.86560 -30.54124 -28.54758 -27.98386 -27.30498 -25.01433 -23.88246 -22.98072 -22.07058 -21.85292 -21.08109 -19.66162 -19.16500 -18.53158 -18.24786 -17.60228 -17.50578 -17.17826 -16.52105 -16.42653 -15.85225 -15.46696 -15.34678 -15.14571 -14.92645 -14.27995 -14.15264 -13.88416 -13.80476 -13.53632 -13.49230 -13.28826 -12.79545 -12.74948 -12.50500 -12.46982 -12.30371 -12.10342 -11.75614 -11.56552 -11.39657 -11.25970 -11.16987 -11.06518 -10.60881 -10.01449 -9.55697 -9.33089 -8.05427 -6.12115 -0.44036 -0.14090 1.12143 1.40447 1.46122 1.49081 1.56101 1.57860 1.82436 2.46606 2.59544 2.69356 3.05287 3.25038 3.57269 3.71374 3.80560 3.83570 4.06327 4.10359 4.23435 4.34773 4.40121 4.44445 4.50445 4.62247 4.69356 4.77334 4.90002 4.94930 5.00300 5.11425 5.19341 5.23673 5.25772 5.41192 5.51871 5.55142 5.63694 5.73420 5.85377 6.38010 6.51450 6.55073 6.80208 6.92117 7.48937 8.96361 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017204 B = 0.003604 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.096884 B = 7768.089999 C = 8537.601980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.486 5.486 3 C 0.461 3.539 4 O -0.436 6.436 5 N -0.522 5.522 6 C 0.023 3.977 7 C -0.006 4.006 8 C -0.134 4.134 9 C 0.499 3.501 10 O -0.553 6.553 11 O -0.326 6.326 12 C 0.124 3.876 13 C 0.013 3.987 14 C -0.501 4.501 15 H 0.060 0.940 16 C 0.036 3.964 17 N -0.907 5.907 18 Si 0.946 3.054 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.260 1.260 22 C -0.189 4.189 23 C -0.185 4.185 24 C -0.053 4.053 25 C -0.098 4.098 26 C 0.084 3.916 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.434 0.566 31 H 0.131 0.869 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.260 0.740 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.152 0.848 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.078 14.160 -4.300 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.187 5.187 3 C 0.158 3.842 4 O -0.242 6.242 5 N -0.254 5.254 6 C -0.094 4.094 7 C -0.026 4.026 8 C -0.137 4.137 9 C 0.346 3.654 10 O -0.447 6.447 11 O -0.241 6.241 12 C 0.051 3.949 13 C 0.012 3.988 14 C -0.538 4.538 15 H 0.078 0.922 16 C -0.165 4.165 17 N -0.545 5.545 18 Si 0.771 3.229 19 H -0.196 1.196 20 H -0.217 1.217 21 H -0.184 1.184 22 C -0.226 4.226 23 C -0.222 4.222 24 C -0.073 4.073 25 C -0.118 4.118 26 C -0.028 4.028 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.297 0.703 31 H 0.149 0.851 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.170 0.830 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.190 15.027 -4.781 21.896 hybrid contribution -0.419 -0.400 1.219 1.350 sum -15.610 14.627 -3.561 21.687 Atomic orbital electron populations 1.22469 0.72500 1.06846 1.05626 1.45795 1.09250 1.03717 1.59954 1.20403 0.83525 0.82513 0.97804 1.84782 1.85897 1.16672 1.36804 1.70630 1.17865 1.11254 1.25609 1.18510 0.92775 0.89646 1.08497 1.20197 0.98534 0.89644 0.94177 1.18808 0.92629 0.90989 1.11286 1.21522 0.88575 0.83072 0.72200 1.90732 1.24868 1.80515 1.48582 1.86529 1.39954 1.16061 1.81531 1.22538 0.84400 0.88026 0.99943 1.18978 0.98116 0.87306 0.94357 1.20595 1.11578 1.24038 0.97634 0.92181 1.25576 0.97709 0.94034 0.99158 1.69973 1.27843 1.37900 1.18775 0.85800 0.80971 0.78349 0.77794 1.19647 1.21696 1.18407 1.22973 0.93950 1.01193 1.04532 1.22989 1.01149 1.04656 0.93404 1.21076 0.89789 1.01503 0.94908 1.19878 1.01261 0.87136 1.03563 1.18948 0.90277 0.89918 1.03621 0.88400 0.87268 0.87789 0.70282 0.85062 0.94709 0.90399 0.93077 0.90376 0.89943 0.89335 0.89577 0.83028 0.80960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 11.10 127.77 1.42 1.85 16 2 N -0.49 -8.63 3.22 -654.88 -2.11 -10.74 16 3 C 0.46 9.71 8.98 179.75 1.61 11.33 16 4 O -0.44 -5.66 13.51 -85.63 -1.16 -6.82 16 5 N -0.52 -15.53 11.32 -306.54 -3.47 -19.00 16 6 C 0.02 0.71 7.21 39.35 0.28 1.00 16 7 C -0.01 -0.20 9.64 22.78 0.22 0.02 16 8 C -0.13 -4.95 5.87 -20.12 -0.12 -5.07 16 9 C 0.50 22.67 7.87 70.27 0.55 23.22 16 10 O -0.55 -27.59 16.06 19.83 0.32 -27.27 16 11 O -0.33 -15.80 9.10 -56.42 -0.51 -16.32 16 12 C 0.12 6.30 4.66 71.98 0.34 6.64 16 13 C 0.01 0.64 2.10 -52.93 -0.11 0.53 16 14 C -0.50 -26.68 8.75 25.60 0.22 -26.45 16 15 H 0.06 3.13 7.86 -2.91 -0.02 3.11 16 16 C 0.04 1.92 5.12 84.66 0.43 2.35 16 17 N -0.91 -51.32 10.97 21.45 0.24 -51.08 16 18 Si 0.95 41.79 29.57 68.60 2.03 43.81 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 22 C -0.19 -8.30 9.96 30.62 0.30 -8.00 16 23 C -0.18 -7.68 9.92 30.62 0.30 -7.38 16 24 C -0.05 -1.59 9.54 22.32 0.21 -1.38 16 25 C -0.10 -2.23 9.96 22.04 0.22 -2.01 16 26 C 0.08 2.05 6.87 38.92 0.27 2.32 16 27 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 28 H 0.11 0.37 8.12 -2.39 -0.02 0.35 16 29 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.43 0.74 9.06 -74.06 -0.67 0.07 16 31 H 0.13 4.85 7.64 -2.91 -0.02 4.83 16 32 H 0.03 1.68 7.95 -2.39 -0.02 1.66 16 33 H 0.08 4.44 6.13 -2.38 -0.01 4.43 16 34 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 35 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.09 3.48 8.14 -2.39 -0.02 3.47 16 38 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 39 H 0.15 4.64 7.59 -2.91 -0.02 4.62 16 40 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -74.41 352.20 1.92 -72.50 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.42 Total: 15.96 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.16 Total: -1.05 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -5.34 Total: -80.82 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -1.35 Total: -50.40 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -74.41 1.92 -72.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.019 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds