Wall clock time and date at job start Tue Mar 31 2020 11:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35672 * 116.99836 * 2 1 4 4 C 1.39284 * 119.62022 * 180.02562 * 3 2 1 5 5 C 1.38321 * 119.30897 * 180.02562 * 4 3 2 6 6 C 1.38785 * 118.55982 * 359.74469 * 5 4 3 7 7 C 1.39135 * 119.18630 * 0.48021 * 6 5 4 8 8 C 1.48141 * 119.68953 * 179.79107 * 7 6 5 9 9 O 1.21516 * 120.00667 * 358.75002 * 8 7 6 10 10 N 1.34777 * 119.99930 * 178.75308 * 8 7 6 11 11 C 1.46499 * 120.00238 * 184.26729 * 10 8 7 12 12 C 1.50693 * 109.47539 * 89.99815 * 11 10 8 13 13 H 1.08005 * 120.00124 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00240 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99851 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99899 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47364 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47246 * 120.00175 * 16 14 12 19 19 H 1.48499 * 109.46853 * 239.99988 * 16 14 12 20 20 C 1.46500 * 120.00131 * 4.26229 * 10 8 7 21 21 C 1.50699 * 109.46977 * 83.26132 * 20 10 8 22 22 C 1.34519 * 125.78715 * 89.72218 * 21 20 10 23 23 C 1.41382 * 106.84089 * 179.89245 * 22 21 20 24 24 C 1.34513 * 106.84127 * 0.36688 * 23 22 21 25 25 O 1.34301 * 108.42045 * 359.77513 * 24 23 22 26 26 N 1.31901 * 119.61363 * 359.97438 * 3 2 1 27 27 H 1.09001 * 109.47016 * 60.00857 * 1 2 3 28 28 H 1.09005 * 109.46755 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47484 * 299.99891 * 1 2 3 30 30 H 1.08001 * 120.34258 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.72403 * 180.02562 * 5 4 3 32 32 H 1.07999 * 120.41489 * 180.24827 * 6 5 4 33 33 H 1.09007 * 109.47300 * 210.00239 * 11 10 8 34 34 H 1.08996 * 109.47038 * 329.99573 * 11 10 8 35 35 H 0.96997 * 120.00007 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47574 * 203.26097 * 20 10 8 37 37 H 1.09007 * 109.47174 * 323.26831 * 20 10 8 38 38 H 1.07995 * 126.58104 * 0.02562 * 22 21 20 39 39 H 1.08000 * 126.57891 * 180.16844 * 23 22 21 40 40 H 1.08004 * 125.79292 * 179.75877 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4363 1.2726 -0.0005 5 6 4.0575 2.5084 0.0000 6 6 3.2664 3.6487 -0.0044 7 6 1.8816 3.5138 0.0011 8 6 1.0265 4.7235 0.0012 9 8 1.5349 5.8270 0.0195 10 7 -0.3155 4.6001 -0.0190 11 6 -1.1595 5.7938 -0.1133 12 6 -1.4193 6.1122 -1.5631 13 1 -0.9981 5.4876 -2.3370 14 6 -2.1946 7.2010 -1.9017 15 7 -2.7078 7.9613 -0.9594 16 14 -2.5171 7.5951 -3.6989 17 1 -1.8326 6.5940 -4.5559 18 1 -3.9783 7.5546 -3.9601 19 1 -1.9962 8.9507 -4.0095 20 6 -0.9302 3.2723 0.0533 21 6 -1.0191 2.8377 1.4935 22 6 -2.0493 3.0761 2.3250 23 6 -1.7155 2.4926 3.5687 24 6 -0.4977 1.9395 3.4253 25 8 -0.0809 2.1516 2.1664 26 7 1.3190 2.3102 -0.0005 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 4.0239 0.3664 -0.0005 31 1 5.1349 2.5845 -0.0008 32 1 3.7199 4.6288 -0.0081 33 1 -2.1068 5.6101 0.3938 34 1 -0.6524 6.6355 0.3584 35 1 -3.2535 8.7270 -1.1975 36 1 -1.9309 3.3113 -0.3769 37 1 -0.3224 2.5597 -0.5043 38 1 -2.9581 3.6090 2.0874 39 1 -2.3205 2.4937 4.4633 40 1 0.0518 1.4142 4.1925 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752411932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:30 Heat of formation + Delta-G solvation = 13.733455 kcal Electronic energy + Delta-G solvation = -27304.552333 eV Core-core repulsion = 23474.280613 eV Total energy + Delta-G solvation = -3830.271720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.26418 -40.75224 -38.90765 -37.47073 -35.33328 -33.02275 -32.70427 -32.19726 -30.72533 -30.08017 -27.68219 -27.22548 -25.43430 -24.41511 -22.94370 -22.39946 -21.36114 -20.43200 -19.64995 -17.89647 -17.48373 -16.93084 -16.32033 -16.11911 -16.04759 -15.92801 -15.37913 -15.22660 -14.63044 -14.37784 -14.02731 -13.99097 -13.49483 -13.11549 -12.87318 -12.50911 -12.48954 -12.39231 -12.20701 -12.09806 -11.77473 -11.49920 -11.24719 -11.11031 -10.92061 -10.63859 -10.21962 -9.93471 -9.87594 -9.58415 -9.55404 -8.83611 -8.50278 -8.47125 -8.19696 -7.76157 -6.07466 -4.12785 0.82682 1.31387 2.00232 2.88645 3.07035 3.14678 3.28570 3.36060 3.37963 3.41606 3.76252 4.14315 4.29764 4.43842 4.89867 4.99247 5.04572 5.08038 5.22863 5.26952 5.28523 5.32615 5.37938 5.40645 5.49187 5.70130 5.80572 5.97794 6.10047 6.14258 6.20539 6.31166 6.36648 6.48718 6.81309 6.95714 7.23282 7.35773 7.43625 7.55245 7.74771 7.89056 8.17553 8.26455 8.79173 8.96363 9.52470 11.00678 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012985 B = 0.005200 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.755620 B = 5383.606098 C = 6354.921448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.318 3.682 4 C -0.179 4.179 5 C -0.048 4.048 6 C -0.155 4.155 7 C 0.134 3.866 8 C 0.559 3.441 9 O -0.526 6.526 10 N -0.569 5.569 11 C 0.243 3.757 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.163 3.837 21 C -0.002 4.002 22 C -0.208 4.208 23 C -0.212 4.212 24 C -0.062 4.062 25 O -0.161 6.161 26 N -0.498 5.498 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.036 0.964 34 H 0.047 0.953 35 H 0.263 0.737 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 -17.142 5.463 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.214 6.214 3 C 0.137 3.863 4 C -0.200 4.200 5 C -0.073 4.073 6 C -0.176 4.176 7 C -0.003 4.003 8 C 0.343 3.657 9 O -0.402 6.402 10 N -0.299 5.299 11 C 0.125 3.875 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.208 1.208 20 C 0.039 3.961 21 C -0.053 4.053 22 C -0.228 4.228 23 C -0.231 4.231 24 C -0.131 4.131 25 O -0.056 6.056 26 N -0.225 5.225 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 7.049 -16.760 5.358 18.955 hybrid contribution 0.036 0.470 -0.558 0.730 sum 7.085 -16.289 4.800 18.400 Atomic orbital electron populations 1.23150 0.77228 1.02982 1.03307 1.86199 1.22953 1.24307 1.87916 1.19953 0.89366 0.84885 0.92060 1.21168 0.92016 0.99531 1.07295 1.21377 1.00569 0.90924 0.94439 1.21967 0.93179 1.00705 1.01761 1.21264 0.92548 0.90579 0.95889 1.17826 0.82611 0.86893 0.78322 1.90764 1.73305 1.25798 1.50322 1.48151 1.05145 1.08292 1.68280 1.19439 0.89084 0.81469 0.97527 1.21451 1.31409 1.12018 0.91877 0.92203 1.24927 0.95566 0.95697 0.97766 1.69943 1.33991 1.16933 1.32238 0.86433 0.77790 0.78424 0.84735 1.19747 1.20920 1.20843 1.20800 1.01584 0.86272 0.87404 1.23160 0.87847 0.97768 0.96552 1.21715 1.01717 1.05964 0.93396 1.21766 0.97735 1.04198 0.99387 1.23926 0.97070 1.06029 0.86046 1.84148 1.42235 1.57983 1.21271 1.67695 1.38490 0.98332 1.17992 0.92213 0.88919 0.91075 0.84177 0.83745 0.83344 0.94585 0.93524 0.92696 0.88006 0.84865 0.83542 0.84086 0.79082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.94 101.05 1.00 1.32 16 2 O -0.31 -3.91 10.48 -18.72 -0.20 -4.11 16 3 C 0.32 4.39 7.49 -17.13 -0.13 4.26 16 4 C -0.18 -2.05 10.04 -39.16 -0.39 -2.45 16 5 C -0.05 -0.53 10.16 -39.35 -0.40 -0.93 16 6 C -0.15 -2.29 9.63 -39.05 -0.38 -2.67 16 7 C 0.13 2.38 6.65 -83.02 -0.55 1.83 16 8 C 0.56 12.34 7.60 -12.19 -0.09 12.25 16 9 O -0.53 -13.31 15.87 5.35 0.08 -13.23 16 10 N -0.57 -12.57 2.46 -177.44 -0.44 -13.00 16 11 C 0.24 6.36 5.16 -5.20 -0.03 6.33 16 12 C -0.53 -14.78 9.39 -34.44 -0.32 -15.11 16 13 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 16 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.16 2.93 5.54 -5.19 -0.03 2.90 16 21 C 0.00 -0.03 5.66 -35.62 -0.20 -0.23 16 22 C -0.21 -3.35 10.81 -39.70 -0.43 -3.78 16 23 C -0.21 -2.93 10.91 -39.70 -0.43 -3.37 16 24 C -0.06 -0.83 12.09 29.42 0.36 -0.47 16 25 O -0.16 -2.51 6.81 5.71 0.04 -2.47 16 26 N -0.50 -7.90 2.93 -9.87 -0.03 -7.93 16 27 H 0.06 0.67 7.23 -51.93 -0.38 0.30 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.88 4.71 -51.93 -0.24 0.63 16 30 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.15 2.17 7.63 -52.49 -0.40 1.77 16 33 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.05 1.38 7.37 -51.93 -0.38 0.99 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.10 1.77 8.02 -51.93 -0.42 1.36 16 37 H 0.13 2.24 3.43 -62.00 -0.21 2.03 16 38 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 40 H 0.19 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -33.18 340.23 -6.35 -39.53 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.53 Total: 3.40 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.12 Total: 1.56 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.27 Total: -46.39 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.07 Total: -19.80 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.18 -6.35 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752411932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.262 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds