Wall clock time and date at job start Tue Mar 31 2020 11:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36244 * 126.39846 * 2 1 4 4 O 1.35203 * 125.00832 * 0.04505 * 3 2 1 5 5 N 1.30925 * 109.97498 * 180.02562 * 3 2 1 6 6 C 1.35538 * 109.71487 * 0.02562 * 5 3 2 7 7 C 1.40044 * 133.25722 * 180.02562 * 6 5 3 8 8 C 1.36173 * 120.09333 * 179.97438 * 7 6 5 9 9 C 1.40212 * 120.48787 * 359.97438 * 8 7 6 10 10 C 1.47371 * 119.95115 * 179.97438 * 9 8 7 11 11 O 1.21521 * 119.99540 * 185.19880 * 10 9 8 12 12 O 1.34758 * 120.00142 * 5.19776 * 10 9 8 13 13 C 1.45200 * 116.99903 * 184.82877 * 12 10 9 14 14 C 1.53002 * 109.47316 * 183.85022 * 13 12 10 15 15 C 1.50708 * 115.54963 * 294.96748 * 14 13 12 16 16 H 1.07998 * 120.00058 * 114.75448 * 15 14 13 17 17 C 1.37874 * 119.99828 * 294.48369 * 15 14 13 18 18 N 1.31513 * 120.00060 * 174.27762 * 17 15 14 19 19 Si 1.86804 * 119.99994 * 354.27886 * 17 15 14 20 20 H 1.48497 * 109.46989 * 93.49486 * 19 17 15 21 21 H 1.48502 * 109.47022 * 213.49147 * 19 17 15 22 22 H 1.48500 * 109.47024 * 333.49124 * 19 17 15 23 23 C 1.53003 * 117.49814 * 80.63587 * 14 13 12 24 24 C 1.52995 * 117.50290 * 149.29606 * 14 13 12 25 25 C 1.39593 * 120.09537 * 0.27828 * 9 8 7 26 26 C 1.38196 * 119.58314 * 359.44908 * 25 9 8 27 27 H 1.08996 * 109.47325 * 269.97405 * 1 2 3 28 28 H 1.09005 * 109.47318 * 29.97103 * 1 2 3 29 29 H 1.09004 * 109.47387 * 149.97604 * 1 2 3 30 30 H 0.96698 * 113.99698 * 90.00601 * 4 3 2 31 31 H 1.08006 * 119.95143 * 359.95770 * 7 6 5 32 32 H 1.08003 * 119.75511 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47216 * 63.85123 * 13 12 10 34 34 H 1.09001 * 109.47393 * 303.84802 * 13 12 10 35 35 H 0.97005 * 120.00169 * 179.97438 * 18 17 15 36 36 H 1.09004 * 117.49252 * 215.00627 * 23 14 13 37 37 H 1.08998 * 117.50071 * 0.02573 * 23 14 13 38 38 H 1.09006 * 117.50073 * 359.97438 * 24 14 13 39 39 H 1.09004 * 117.50447 * 144.97155 * 24 14 13 40 40 H 1.08004 * 120.21112 * 179.70195 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2735 1.0966 0.0000 4 8 1.8424 2.3781 0.0009 5 7 3.5293 0.7265 -0.0006 6 6 3.6071 -0.6267 -0.0015 7 6 4.6805 -1.5262 -0.0019 8 6 4.4470 -2.8678 -0.0024 9 6 3.1347 -3.3614 -0.0020 10 6 2.8956 -4.8156 -0.0031 11 8 1.7627 -5.2450 -0.0980 12 8 3.9332 -5.6692 0.1012 13 6 3.6358 -7.0856 -0.0150 14 6 4.9115 -7.8959 0.2237 15 6 6.0017 -7.7083 -0.7999 16 1 6.9391 -7.2550 -0.5134 17 6 5.8043 -8.1205 -2.1007 18 7 6.7084 -7.8563 -3.0185 19 14 4.2527 -9.0541 -2.5594 20 1 3.2260 -8.0986 -3.0470 21 1 4.5637 -10.0354 -3.6297 22 1 3.7352 -9.7706 -1.3660 23 6 5.3374 -8.1323 1.6741 24 6 4.7602 -9.2844 0.8480 25 6 2.0543 -2.4775 -0.0069 26 6 2.2872 -1.1153 -0.0006 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 1.7177 2.7505 0.8845 31 1 5.6949 -1.1553 -0.0021 32 1 5.2788 -3.5566 -0.0032 33 1 3.2534 -7.2959 -1.0138 34 1 2.8861 -7.3616 0.7267 35 1 6.5697 -8.1467 -3.9337 36 1 6.4060 -8.1520 1.8879 37 1 4.7085 -7.7109 2.4583 38 1 3.7517 -9.6207 1.0892 39 1 5.4487 -10.0625 0.5182 40 1 1.0426 -2.8557 -0.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752509147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:04 Heat of formation + Delta-G solvation = -8.874993 kcal Electronic energy + Delta-G solvation = -25546.393102 eV Core-core repulsion = 21715.141006 eV Total energy + Delta-G solvation = -3831.252096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.46176 -39.99348 -38.40157 -37.21046 -36.47543 -35.42589 -34.57795 -32.14070 -30.75456 -29.74866 -27.40718 -27.26820 -25.35586 -23.90179 -22.88164 -21.65488 -21.11323 -20.79557 -19.19546 -18.82820 -18.07562 -17.40906 -16.96004 -16.64104 -16.06742 -15.90837 -15.48717 -14.90406 -14.70931 -14.47912 -14.21280 -13.93027 -13.59416 -13.35585 -13.13536 -13.05685 -12.63732 -12.46760 -12.24514 -12.16334 -11.58613 -11.47844 -11.07867 -10.91463 -10.71439 -10.63750 -10.41742 -10.22914 -10.13302 -9.99499 -9.54028 -9.07829 -8.69204 -8.57011 -8.50425 -8.31209 -6.12613 -4.13286 0.33628 1.28938 1.82674 2.09402 2.88385 3.08914 3.25664 3.31172 3.36675 3.40335 3.80465 4.16551 4.30005 4.38907 4.69571 4.70617 4.78533 4.97847 5.01327 5.06326 5.12563 5.21679 5.30418 5.55258 5.62754 5.86507 5.92120 5.93848 6.01242 6.11518 6.18620 6.26769 6.32668 6.37853 6.45649 6.64199 6.64699 6.83098 7.05522 7.10081 7.11709 7.46509 7.68786 8.19179 8.48460 8.91275 9.49757 10.99098 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.021624 B = 0.003106 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.566904 B = 9012.131645 C = 9181.558953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.492 5.492 3 C 0.455 3.545 4 O -0.441 6.441 5 N -0.489 5.489 6 C 0.089 3.911 7 C -0.077 4.077 8 C -0.063 4.063 9 C -0.098 4.098 10 C 0.504 3.496 11 O -0.523 6.523 12 O -0.318 6.318 13 C 0.107 3.893 14 C -0.008 4.008 15 C -0.478 4.478 16 H 0.081 0.919 17 C 0.080 3.920 18 N -0.892 5.892 19 Si 0.858 3.142 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.249 1.249 23 C -0.175 4.175 24 C -0.182 4.182 25 C -0.039 4.039 26 C 0.034 3.966 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.409 0.591 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.265 0.735 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.350 16.094 8.830 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.195 5.195 3 C 0.153 3.847 4 O -0.243 6.243 5 N -0.219 5.219 6 C -0.031 4.031 7 C -0.097 4.097 8 C -0.084 4.084 9 C -0.100 4.100 10 C 0.349 3.651 11 O -0.414 6.414 12 O -0.233 6.233 13 C 0.034 3.966 14 C -0.009 4.009 15 C -0.515 4.515 16 H 0.099 0.901 17 C -0.123 4.123 18 N -0.529 5.529 19 Si 0.685 3.315 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.172 1.172 23 C -0.212 4.212 24 C -0.219 4.219 25 C -0.059 4.059 26 C -0.072 4.072 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.268 0.732 31 H 0.160 0.840 32 H 0.175 0.825 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.080 16.508 8.013 21.969 hybrid contribution -1.952 -0.824 -0.051 2.120 sum -14.032 15.684 7.962 22.500 Atomic orbital electron populations 1.22044 0.75756 1.05251 1.03706 1.45542 1.07509 1.05058 1.61376 1.20390 0.84117 0.81178 0.99055 1.84783 1.86477 1.18490 1.34544 1.70645 1.15289 1.11730 1.24271 1.19023 0.92325 0.89124 1.02644 1.20008 0.97764 0.90921 1.01002 1.21138 0.96545 0.95249 0.95456 1.18856 0.93937 0.89699 1.07548 1.20946 0.83389 0.87664 0.73058 1.90784 1.24144 1.79621 1.46896 1.86635 1.36243 1.19342 1.81058 1.23007 0.97867 0.75368 1.00388 1.19328 0.94351 0.93264 0.93966 1.20225 0.99502 1.40236 0.91580 0.90091 1.24912 0.96083 0.95137 0.96142 1.69884 1.35112 1.45693 1.02233 0.87161 0.84246 0.80794 0.79299 1.20509 1.21428 1.17228 1.22793 1.00543 1.03473 0.94377 1.23086 1.00250 0.92929 1.05675 1.19876 0.99672 0.88003 0.98393 1.18330 0.90906 0.88467 1.09533 0.90450 0.89024 0.89218 0.73210 0.84041 0.82512 0.92044 0.92992 0.92494 0.89273 0.90797 0.91095 0.88859 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 11.12 59.85 0.67 1.10 16 2 N -0.49 -5.06 3.23 -123.40 -0.40 -5.46 16 3 C 0.45 4.98 8.98 -88.91 -0.80 4.19 16 4 O -0.44 -3.27 13.51 -17.30 -0.23 -3.50 16 5 N -0.49 -6.76 11.29 -12.18 -0.14 -6.90 16 6 C 0.09 1.25 7.22 -84.60 -0.61 0.64 16 7 C -0.08 -1.04 10.03 -39.65 -0.40 -1.44 16 8 C -0.06 -0.93 9.53 -39.58 -0.38 -1.31 16 9 C -0.10 -1.55 5.88 -104.93 -0.62 -2.17 16 10 C 0.50 9.64 7.87 34.45 0.27 9.91 16 11 O -0.52 -10.73 16.06 -19.28 -0.31 -11.04 16 12 O -0.32 -6.73 9.39 -40.65 -0.38 -7.11 16 13 C 0.11 2.36 5.01 37.16 0.19 2.55 16 14 C -0.01 -0.19 1.06 -155.66 -0.17 -0.35 16 15 C -0.48 -13.02 9.33 -34.44 -0.32 -13.34 16 16 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 18 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 19 Si 0.86 21.05 24.98 -169.99 -4.25 16.80 16 20 H -0.28 -6.91 7.03 56.52 0.40 -6.51 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.25 -5.66 5.72 56.52 0.32 -5.33 16 23 C -0.17 -3.44 9.96 -26.69 -0.27 -3.70 16 24 C -0.18 -3.70 8.01 -26.70 -0.21 -3.91 16 25 C -0.04 -0.53 9.58 -39.09 -0.37 -0.91 16 26 C 0.03 0.45 6.87 -83.89 -0.58 -0.13 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.41 0.73 9.06 45.56 0.41 1.14 16 31 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.16 2.33 7.59 -52.48 -0.40 1.94 16 33 H 0.06 1.45 5.08 -51.93 -0.26 1.18 16 34 H 0.05 1.04 7.96 -51.93 -0.41 0.63 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 40 H 0.14 1.72 7.65 -52.48 -0.40 1.32 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -34.58 346.91 -7.48 -42.06 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.09 Total: 2.54 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.69 Total: -6.72 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.24 Total: -38.25 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.93 Total: -21.66 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.25 Total: 16.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.58 -7.48 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752509147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.185 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds