Wall clock time and date at job start Tue Mar 31 2020 11:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36244 * 126.39846 * 2 1 4 4 O 1.35203 * 125.00832 * 0.04505 * 3 2 1 5 5 N 1.30925 * 109.97498 * 180.02562 * 3 2 1 6 6 C 1.35538 * 109.71487 * 0.02562 * 5 3 2 7 7 C 1.40044 * 133.25722 * 180.02562 * 6 5 3 8 8 C 1.36173 * 120.09333 * 179.97438 * 7 6 5 9 9 C 1.40212 * 120.48787 * 359.97438 * 8 7 6 10 10 C 1.47371 * 119.95115 * 179.97438 * 9 8 7 11 11 O 1.21521 * 119.99540 * 185.19880 * 10 9 8 12 12 O 1.34758 * 120.00142 * 5.19776 * 10 9 8 13 13 C 1.45200 * 116.99903 * 184.82877 * 12 10 9 14 14 C 1.53002 * 109.47316 * 183.85022 * 13 12 10 15 15 C 1.50708 * 115.54963 * 294.96748 * 14 13 12 16 16 H 1.07998 * 120.00058 * 114.75448 * 15 14 13 17 17 C 1.37874 * 119.99828 * 294.48369 * 15 14 13 18 18 N 1.31513 * 120.00060 * 174.27762 * 17 15 14 19 19 Si 1.86804 * 119.99994 * 354.27886 * 17 15 14 20 20 H 1.48497 * 109.46989 * 93.49486 * 19 17 15 21 21 H 1.48502 * 109.47022 * 213.49147 * 19 17 15 22 22 H 1.48500 * 109.47024 * 333.49124 * 19 17 15 23 23 C 1.53003 * 117.49814 * 80.63587 * 14 13 12 24 24 C 1.52995 * 117.50290 * 149.29606 * 14 13 12 25 25 C 1.39593 * 120.09537 * 0.27828 * 9 8 7 26 26 C 1.38196 * 119.58314 * 359.44908 * 25 9 8 27 27 H 1.08996 * 109.47325 * 269.97405 * 1 2 3 28 28 H 1.09005 * 109.47318 * 29.97103 * 1 2 3 29 29 H 1.09004 * 109.47387 * 149.97604 * 1 2 3 30 30 H 0.96698 * 113.99698 * 90.00601 * 4 3 2 31 31 H 1.08006 * 119.95143 * 359.95770 * 7 6 5 32 32 H 1.08003 * 119.75511 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47216 * 63.85123 * 13 12 10 34 34 H 1.09001 * 109.47393 * 303.84802 * 13 12 10 35 35 H 0.97005 * 120.00169 * 179.97438 * 18 17 15 36 36 H 1.09004 * 117.49252 * 215.00627 * 23 14 13 37 37 H 1.08998 * 117.50071 * 0.02573 * 23 14 13 38 38 H 1.09006 * 117.50073 * 359.97438 * 24 14 13 39 39 H 1.09004 * 117.50447 * 144.97155 * 24 14 13 40 40 H 1.08004 * 120.21112 * 179.70195 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2735 1.0966 0.0000 4 8 1.8424 2.3781 0.0009 5 7 3.5293 0.7265 -0.0006 6 6 3.6071 -0.6267 -0.0015 7 6 4.6805 -1.5262 -0.0019 8 6 4.4470 -2.8678 -0.0024 9 6 3.1347 -3.3614 -0.0020 10 6 2.8956 -4.8156 -0.0031 11 8 1.7627 -5.2450 -0.0980 12 8 3.9332 -5.6692 0.1012 13 6 3.6358 -7.0856 -0.0150 14 6 4.9115 -7.8959 0.2237 15 6 6.0017 -7.7083 -0.7999 16 1 6.9391 -7.2550 -0.5134 17 6 5.8043 -8.1205 -2.1007 18 7 6.7084 -7.8563 -3.0185 19 14 4.2527 -9.0541 -2.5594 20 1 3.2260 -8.0986 -3.0470 21 1 4.5637 -10.0354 -3.6297 22 1 3.7352 -9.7706 -1.3660 23 6 5.3374 -8.1323 1.6741 24 6 4.7602 -9.2844 0.8480 25 6 2.0543 -2.4775 -0.0069 26 6 2.2872 -1.1153 -0.0006 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 1.7177 2.7505 0.8845 31 1 5.6949 -1.1553 -0.0021 32 1 5.2788 -3.5566 -0.0032 33 1 3.2534 -7.2959 -1.0138 34 1 2.8861 -7.3616 0.7267 35 1 6.5697 -8.1467 -3.9337 36 1 6.4060 -8.1520 1.8879 37 1 4.7085 -7.7109 2.4583 38 1 3.7517 -9.6207 1.0892 39 1 5.4487 -10.0625 0.5182 40 1 1.0426 -2.8557 -0.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752509147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:03 Heat of formation + Delta-G solvation = -33.886135 kcal Electronic energy + Delta-G solvation = -25547.477666 eV Core-core repulsion = 21715.141006 eV Total energy + Delta-G solvation = -3832.336660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.38838 -41.46920 -39.33924 -38.71665 -37.48754 -37.00935 -35.43904 -34.26244 -31.76778 -30.88939 -28.94583 -28.03602 -27.30986 -25.10891 -23.87676 -23.24085 -22.09828 -21.99311 -21.04032 -19.63724 -19.26915 -18.73119 -18.35311 -17.64508 -17.56873 -17.51216 -16.70842 -16.43085 -15.81699 -15.45345 -15.41916 -15.17912 -14.95563 -14.66214 -14.36569 -14.24976 -14.01820 -13.79256 -13.57780 -13.07059 -12.99394 -12.87552 -12.61866 -12.50892 -12.26324 -12.10152 -11.78497 -11.67312 -11.59292 -11.39616 -11.17544 -10.96722 -10.61344 -10.37522 -9.57358 -9.33812 -8.28612 -6.32438 -0.73309 0.21324 0.96159 1.11964 1.30625 1.36146 1.46250 1.61696 1.74880 2.34756 2.53671 2.67019 2.98678 3.19831 3.32550 3.62672 3.68324 3.82535 3.97300 4.02232 4.06541 4.15858 4.24141 4.33803 4.37948 4.43060 4.53897 4.63353 4.66071 4.90784 4.96460 4.99169 5.04274 5.19797 5.23053 5.24129 5.49073 5.52690 5.54868 5.60541 5.68212 6.32196 6.48910 6.55094 6.67770 6.74336 7.33729 8.86840 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.021624 B = 0.003106 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.566904 B = 9012.131645 C = 9181.558953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.485 5.485 3 C 0.475 3.525 4 O -0.436 6.436 5 N -0.527 5.527 6 C 0.080 3.920 7 C -0.079 4.079 8 C -0.068 4.068 9 C -0.124 4.124 10 C 0.505 3.495 11 O -0.541 6.541 12 O -0.334 6.334 13 C 0.110 3.890 14 C -0.043 4.043 15 C -0.475 4.475 16 H 0.038 0.962 17 C 0.026 3.974 18 N -0.943 5.943 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.215 1.215 23 C -0.156 4.156 24 C -0.168 4.168 25 C -0.021 4.021 26 C 0.027 3.973 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.437 0.563 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.265 0.735 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.357 17.110 10.398 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.187 5.187 3 C 0.172 3.828 4 O -0.242 6.242 5 N -0.259 5.259 6 C -0.040 4.040 7 C -0.099 4.099 8 C -0.088 4.088 9 C -0.126 4.126 10 C 0.352 3.648 11 O -0.434 6.434 12 O -0.250 6.250 13 C 0.036 3.964 14 C -0.044 4.044 15 C -0.512 4.512 16 H 0.056 0.944 17 C -0.172 4.172 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.137 1.137 23 C -0.193 4.193 24 C -0.205 4.205 25 C -0.042 4.042 26 C -0.081 4.081 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.111 0.889 30 H 0.300 0.700 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.132 17.550 9.637 25.097 hybrid contribution -1.032 -0.849 -0.472 1.417 sum -16.164 16.701 9.165 24.984 Atomic orbital electron populations 1.22437 0.72907 1.06488 1.05678 1.45780 1.09038 1.03831 1.60038 1.20482 0.83664 0.82360 0.96333 1.84762 1.85988 1.16526 1.36924 1.70629 1.17229 1.11450 1.26590 1.19236 0.92944 0.89670 1.02152 1.20084 0.98625 0.90383 1.00800 1.20997 0.95939 0.95633 0.96278 1.18731 0.95045 0.88104 1.10760 1.21413 0.82722 0.88526 0.72171 1.90752 1.24473 1.80081 1.48083 1.86645 1.37441 1.19338 1.81526 1.22855 0.97590 0.75908 1.00019 1.19232 0.94085 0.96106 0.94928 1.20376 0.99293 1.38678 0.92868 0.94374 1.25677 0.99112 0.96275 0.96151 1.70030 1.37608 1.47981 1.02688 0.86271 0.80362 0.79526 0.80022 1.21145 1.21579 1.13737 1.22861 1.01001 1.02364 0.93075 1.23144 1.01830 0.91518 1.04038 1.19888 0.99520 0.88066 0.96712 1.18299 0.91242 0.88812 1.09730 0.88093 0.86972 0.88889 0.69974 0.82757 0.83711 0.93978 0.90521 0.92612 0.89677 0.87944 0.88071 0.89367 0.83169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 11.12 127.77 1.42 1.94 16 2 N -0.49 -8.65 3.23 -655.33 -2.11 -10.76 16 3 C 0.47 9.16 8.98 179.75 1.61 10.77 16 4 O -0.44 -4.94 13.51 -84.83 -1.15 -6.09 16 5 N -0.53 -13.86 11.29 -306.23 -3.46 -17.31 16 6 C 0.08 2.21 7.22 39.62 0.29 2.50 16 7 C -0.08 -2.17 10.03 22.23 0.22 -1.95 16 8 C -0.07 -2.06 9.53 22.27 0.21 -1.85 16 9 C -0.12 -3.95 5.88 -20.07 -0.12 -4.07 16 10 C 0.50 19.38 7.87 70.23 0.55 19.93 16 11 O -0.54 -21.90 16.06 19.77 0.32 -21.59 16 12 O -0.33 -14.30 9.39 -56.69 -0.53 -14.84 16 13 C 0.11 4.73 5.01 71.98 0.36 5.09 16 14 C -0.04 -1.92 1.06 -52.93 -0.06 -1.97 16 15 C -0.47 -26.62 9.33 25.60 0.24 -26.39 16 16 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16 17 C 0.03 1.49 5.47 84.65 0.46 1.95 16 18 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 19 Si 0.91 43.73 24.98 68.60 1.71 45.45 16 20 H -0.28 -13.83 7.03 99.48 0.70 -13.13 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 22 H -0.22 -9.03 5.72 99.48 0.57 -8.46 16 23 C -0.16 -5.82 9.96 30.62 0.30 -5.52 16 24 C -0.17 -6.35 8.01 30.62 0.25 -6.11 16 25 C -0.02 -0.57 9.58 22.59 0.22 -0.35 16 26 C 0.03 0.67 6.87 38.68 0.27 0.93 16 27 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.11 0.49 8.12 -2.38 -0.02 0.47 16 29 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.44 -0.17 9.06 -74.06 -0.67 -0.84 16 31 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.15 4.64 7.59 -2.91 -0.02 4.62 16 33 H 0.04 1.95 5.08 -2.39 -0.01 1.94 16 34 H 0.08 2.89 7.96 -2.39 -0.02 2.87 16 35 H 0.26 15.59 8.31 -92.70 -0.77 14.81 16 36 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 37 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 39 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 40 H 0.15 3.52 7.65 -2.91 -0.02 3.49 16 Total: -1.00 -77.44 346.91 1.58 -75.85 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.28 Total: 12.89 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 6.23 Total: -5.08 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -5.27 Total: -86.61 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -1.36 Total: -42.51 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.71 Total: 45.45 kcal Total: -77.44 1.58 -75.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752509147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.968 kcal (2) G-P(sol) polarization free energy of solvation -77.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds