Wall clock time and date at job start Tue Mar 31 2020 11:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34950 * 126.03791 * 2 1 4 4 C 1.35319 * 107.74394 * 180.15059 * 3 2 1 5 5 C 1.50696 * 126.03802 * 179.87646 * 4 3 2 6 6 O 1.45202 * 109.47388 * 269.71122 * 5 4 3 7 7 C 1.34224 * 117.00312 * 179.97438 * 6 5 4 8 8 O 1.20827 * 120.00240 * 0.02562 * 7 6 5 9 9 C 1.50708 * 120.00032 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.46824 * 180.02562 * 9 7 6 11 11 C 1.38325 * 119.96184 * 269.71741 * 10 9 7 12 12 C 1.38284 * 120.13371 * 179.77136 * 11 10 9 13 13 C 1.38119 * 120.07204 * 0.51197 * 12 11 10 14 14 C 1.38858 * 119.92860 * 359.74218 * 13 12 11 15 15 O 1.35749 * 120.06810 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00161 * 354.49395 * 15 14 13 17 17 H 1.07995 * 119.99758 * 5.05239 * 16 15 14 18 18 C 1.38649 * 120.00022 * 185.05609 * 16 15 14 19 19 N 1.31556 * 120.00182 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00049 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46815 * 59.99739 * 20 18 16 22 22 H 1.48498 * 109.47387 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47186 * 300.00056 * 20 18 16 24 24 C 1.38076 * 119.97038 * 90.00082 * 10 9 7 25 25 C 1.39870 * 107.91842 * 359.61236 * 4 3 2 26 26 N 1.30836 * 108.20551 * 0.24197 * 25 4 3 27 27 H 1.08998 * 109.46980 * 270.25763 * 1 2 3 28 28 H 1.09007 * 109.47110 * 30.25867 * 1 2 3 29 29 H 1.09004 * 109.47432 * 150.25494 * 1 2 3 30 30 H 1.08000 * 126.12852 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.46966 * 149.71498 * 5 4 3 32 32 H 1.08996 * 109.47264 * 29.71320 * 5 4 3 33 33 H 1.09005 * 109.46548 * 300.00019 * 9 7 6 34 34 H 1.08994 * 109.47018 * 59.99720 * 9 7 6 35 35 H 1.07996 * 119.93352 * 0.02562 * 11 10 9 36 36 H 1.08008 * 119.96234 * 180.26148 * 12 11 10 37 37 H 1.07997 * 120.03366 * 179.76943 * 13 12 11 38 38 H 0.97004 * 119.99654 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.03133 * 359.95169 * 24 10 9 40 40 H 1.08001 * 125.89648 * 180.26451 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7679 1.5452 -0.0073 6 8 5.1614 1.8211 -1.3774 7 6 6.2421 2.5967 -1.5567 8 8 6.8400 3.0303 -0.6005 9 6 6.7099 2.9267 -2.9509 10 6 7.9326 3.8044 -2.8758 11 6 7.7946 5.1805 -2.8513 12 6 8.9139 5.9893 -2.7777 13 6 10.1740 5.4251 -2.7390 14 6 10.3160 4.0441 -2.7688 15 8 11.5532 3.4867 -2.7314 16 6 12.6055 4.3281 -2.7811 17 1 12.4443 5.3959 -2.7650 18 6 13.8946 3.8226 -2.8529 19 7 14.0910 2.5220 -2.8721 20 14 15.3526 4.9885 -2.9224 21 1 15.3669 5.8363 -1.7032 22 1 16.6111 4.2035 -2.9939 23 1 15.2386 5.8525 -4.1248 24 6 9.1896 3.2344 -2.8374 25 6 3.5345 -0.7322 0.0035 26 7 2.2890 -1.1328 0.0055 27 1 -0.3633 0.0046 1.0276 28 1 -0.3634 0.8877 -0.5179 29 1 -0.3634 -0.8923 -0.5099 30 1 1.9281 2.1193 -0.0004 31 1 5.5820 1.0363 0.5090 32 1 4.5441 2.4824 0.5022 33 1 6.9563 2.0054 -3.4789 34 1 5.9179 3.4511 -3.4852 35 1 6.8105 5.6242 -2.8856 36 1 8.8027 7.0633 -2.7544 37 1 11.0479 6.0574 -2.6853 38 1 14.9929 2.1684 -2.9219 39 1 9.2968 2.1600 -2.8604 40 1 4.4053 -1.3711 0.0069 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760640815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:29 Heat of formation + Delta-G solvation = -4.262667 kcal Electronic energy + Delta-G solvation = -24308.059994 eV Core-core repulsion = 20477.007904 eV Total energy + Delta-G solvation = -3831.052090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56664 -40.26714 -38.92407 -36.85784 -36.06097 -33.78400 -32.44723 -32.08115 -31.37186 -29.24338 -28.31902 -27.23724 -25.44217 -25.09331 -21.94015 -21.49979 -21.46808 -20.64544 -20.25412 -17.68556 -17.48316 -17.36114 -16.90641 -16.34874 -15.93052 -15.68999 -15.06956 -14.79623 -14.57722 -14.38438 -13.94978 -13.68397 -13.53097 -13.40707 -13.20249 -13.04208 -12.80870 -12.55611 -12.44183 -12.17087 -11.82981 -11.53117 -11.24581 -11.08359 -10.83719 -10.77075 -10.61539 -10.51795 -10.44162 -10.26323 -9.78754 -9.31965 -8.88844 -8.80240 -8.07977 -7.20393 -6.40768 -3.99959 1.44987 1.96403 2.13743 2.29924 2.41105 2.45816 3.15622 3.16072 3.19685 3.25657 3.99755 4.10870 4.43208 4.58082 4.68465 4.74003 4.83334 4.91400 4.95249 5.04105 5.13744 5.14096 5.22983 5.41113 5.47136 5.55315 5.67845 5.75287 5.77527 5.94401 6.18690 6.25015 6.35209 6.54053 6.57896 6.68878 6.92949 7.09032 7.26094 7.31304 7.38108 7.46011 7.83109 7.99737 8.03890 9.04672 9.75076 10.77266 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.028837 B = 0.002114 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.753517 B =13240.973060 C =13892.809834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.377 5.377 3 C 0.082 3.918 4 C -0.246 4.246 5 C 0.147 3.853 6 O -0.361 6.361 7 C 0.460 3.540 8 O -0.491 6.491 9 C -0.065 4.065 10 C -0.043 4.043 11 C -0.195 4.195 12 C -0.075 4.075 13 C -0.228 4.228 14 C 0.154 3.846 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.172 4.172 25 C 0.071 3.929 26 N -0.299 5.299 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.177 0.823 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.270 0.730 39 H 0.116 0.884 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.932 -1.354 3.268 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.158 5.158 3 C -0.065 4.065 4 C -0.258 4.258 5 C 0.072 3.928 6 O -0.278 6.278 7 C 0.302 3.698 8 O -0.377 6.377 9 C -0.102 4.102 10 C -0.043 4.043 11 C -0.214 4.214 12 C -0.093 4.093 13 C -0.247 4.247 14 C 0.100 3.900 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.191 4.191 25 C -0.115 4.115 26 N -0.119 5.119 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.195 0.805 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.145 0.855 38 H 0.080 0.920 39 H 0.134 0.866 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -25.449 -2.657 3.605 25.840 hybrid contribution 1.243 1.404 0.169 1.883 sum -24.206 -1.253 3.774 24.531 Atomic orbital electron populations 1.21895 0.73926 1.04731 1.03492 1.48531 1.06840 1.03890 1.56545 1.22416 0.90733 0.93595 0.99776 1.19723 0.93498 0.93919 1.18655 1.20945 0.93384 0.97823 0.80629 1.86578 1.45045 1.64223 1.31995 1.23805 0.77658 0.75366 0.93019 1.90720 1.54500 1.49395 1.43063 1.20261 0.97308 1.01787 0.90856 1.18675 0.91740 0.93150 1.00745 1.20368 0.97619 0.92564 1.10886 1.20686 0.92265 0.98403 0.97942 1.21195 0.97800 0.94967 1.10773 1.19268 0.86795 0.91339 0.92567 1.83978 1.10003 1.35275 1.78915 1.21267 0.83122 0.89679 1.52720 0.89150 1.25279 0.97916 0.96741 0.96596 1.70033 1.22513 1.11202 1.46087 0.85788 0.79409 0.79104 0.79150 1.19537 1.20309 1.19525 1.19974 0.89964 0.98997 1.10206 1.23895 0.95341 0.94341 0.97945 1.77420 1.01606 1.08047 1.24863 0.90626 0.89289 0.89106 0.80543 0.90235 0.90731 0.87102 0.87313 0.87775 0.87370 0.85540 0.92016 0.86606 0.79579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.41 11.47 59.84 0.69 1.10 16 2 N -0.38 -3.24 4.01 -68.16 -0.27 -3.51 16 3 C 0.08 0.68 11.40 -17.22 -0.20 0.48 16 4 C -0.25 -2.49 5.74 -105.05 -0.60 -3.10 16 5 C 0.15 1.63 5.94 36.00 0.21 1.84 16 6 O -0.36 -4.67 10.20 -39.24 -0.40 -5.07 16 7 C 0.46 6.90 7.95 36.01 0.29 7.18 16 8 O -0.49 -9.19 15.78 -18.75 -0.30 -9.49 16 9 C -0.06 -0.88 5.94 -29.03 -0.17 -1.06 16 10 C -0.04 -0.78 4.37 -104.65 -0.46 -1.23 16 11 C -0.20 -3.46 9.70 -39.53 -0.38 -3.85 16 12 C -0.07 -1.41 10.04 -39.61 -0.40 -1.81 16 13 C -0.23 -5.09 9.17 -39.40 -0.36 -5.45 16 14 C 0.15 3.82 6.65 -39.11 -0.26 3.56 16 15 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 16 C -0.39 -11.11 9.49 30.88 0.29 -10.82 16 17 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 20 Si 0.94 20.77 29.55 -169.99 -5.02 15.74 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 C -0.17 -3.74 9.64 -39.40 -0.38 -4.12 16 25 C 0.07 0.74 11.96 -17.37 -0.21 0.53 16 26 N -0.30 -3.33 12.58 30.62 0.39 -2.94 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.11 1.32 8.08 -51.93 -0.42 0.90 16 34 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 35 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 37 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 40 H 0.19 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -36.25 358.14 -6.26 -42.51 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.77 Total: 3.15 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.04 Total: -15.75 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.87 Total: -31.31 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.70 Total: -19.74 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.25 -6.26 -42.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760640815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.247 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds