Wall clock time and date at job start Tue Mar 31 2020 11:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34950 * 126.03791 * 2 1 4 4 C 1.35319 * 107.74394 * 180.15059 * 3 2 1 5 5 C 1.50696 * 126.03802 * 179.87646 * 4 3 2 6 6 O 1.45202 * 109.47388 * 269.71122 * 5 4 3 7 7 C 1.34224 * 117.00312 * 179.97438 * 6 5 4 8 8 O 1.20827 * 120.00240 * 0.02562 * 7 6 5 9 9 C 1.50708 * 120.00032 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.46824 * 180.02562 * 9 7 6 11 11 C 1.38325 * 119.96184 * 269.71741 * 10 9 7 12 12 C 1.38284 * 120.13371 * 179.77136 * 11 10 9 13 13 C 1.38119 * 120.07204 * 0.51197 * 12 11 10 14 14 C 1.38858 * 119.92860 * 359.74218 * 13 12 11 15 15 O 1.35749 * 120.06810 * 179.97438 * 14 13 12 16 16 C 1.34831 * 117.00161 * 354.49395 * 15 14 13 17 17 H 1.07995 * 119.99758 * 5.05239 * 16 15 14 18 18 C 1.38649 * 120.00022 * 185.05609 * 16 15 14 19 19 N 1.31556 * 120.00182 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00049 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46815 * 59.99739 * 20 18 16 22 22 H 1.48498 * 109.47387 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47186 * 300.00056 * 20 18 16 24 24 C 1.38076 * 119.97038 * 90.00082 * 10 9 7 25 25 C 1.39870 * 107.91842 * 359.61236 * 4 3 2 26 26 N 1.30836 * 108.20551 * 0.24197 * 25 4 3 27 27 H 1.08998 * 109.46980 * 270.25763 * 1 2 3 28 28 H 1.09007 * 109.47110 * 30.25867 * 1 2 3 29 29 H 1.09004 * 109.47432 * 150.25494 * 1 2 3 30 30 H 1.08000 * 126.12852 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.46966 * 149.71498 * 5 4 3 32 32 H 1.08996 * 109.47264 * 29.71320 * 5 4 3 33 33 H 1.09005 * 109.46548 * 300.00019 * 9 7 6 34 34 H 1.08994 * 109.47018 * 59.99720 * 9 7 6 35 35 H 1.07996 * 119.93352 * 0.02562 * 11 10 9 36 36 H 1.08008 * 119.96234 * 180.26148 * 12 11 10 37 37 H 1.07997 * 120.03366 * 179.76943 * 13 12 11 38 38 H 0.97004 * 119.99654 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.03133 * 359.95169 * 24 10 9 40 40 H 1.08001 * 125.89648 * 180.26451 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7679 1.5452 -0.0073 6 8 5.1614 1.8211 -1.3774 7 6 6.2421 2.5967 -1.5567 8 8 6.8400 3.0303 -0.6005 9 6 6.7099 2.9267 -2.9509 10 6 7.9326 3.8044 -2.8758 11 6 7.7946 5.1805 -2.8513 12 6 8.9139 5.9893 -2.7777 13 6 10.1740 5.4251 -2.7390 14 6 10.3160 4.0441 -2.7688 15 8 11.5532 3.4867 -2.7314 16 6 12.6055 4.3281 -2.7811 17 1 12.4443 5.3959 -2.7650 18 6 13.8946 3.8226 -2.8529 19 7 14.0910 2.5220 -2.8721 20 14 15.3526 4.9885 -2.9224 21 1 15.3669 5.8363 -1.7032 22 1 16.6111 4.2035 -2.9939 23 1 15.2386 5.8525 -4.1248 24 6 9.1896 3.2344 -2.8374 25 6 3.5345 -0.7322 0.0035 26 7 2.2890 -1.1328 0.0055 27 1 -0.3633 0.0046 1.0276 28 1 -0.3634 0.8877 -0.5179 29 1 -0.3634 -0.8923 -0.5099 30 1 1.9281 2.1193 -0.0004 31 1 5.5820 1.0363 0.5090 32 1 4.5441 2.4824 0.5022 33 1 6.9563 2.0054 -3.4789 34 1 5.9179 3.4511 -3.4852 35 1 6.8105 5.6242 -2.8856 36 1 8.8027 7.0633 -2.7544 37 1 11.0479 6.0574 -2.6853 38 1 14.9929 2.1684 -2.9219 39 1 9.2968 2.1600 -2.8604 40 1 4.4053 -1.3711 0.0069 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760640815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:29 Heat of formation + Delta-G solvation = -27.343804 kcal Electronic energy + Delta-G solvation = -24309.060868 eV Core-core repulsion = 20477.007904 eV Total energy + Delta-G solvation = -3832.052963 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.26021 -41.46376 -40.61792 -38.43906 -37.37018 -34.40344 -34.32399 -33.58171 -32.19428 -30.90947 -29.21534 -28.33268 -27.26416 -26.05660 -23.41313 -23.05898 -22.11412 -21.69710 -21.35944 -19.48569 -18.78775 -18.63151 -18.03410 -17.46647 -16.90506 -16.70228 -16.35017 -16.27329 -16.09358 -15.49091 -15.40806 -15.13958 -14.70385 -14.50168 -14.29779 -14.06819 -13.73914 -13.69035 -13.53824 -13.42454 -13.01552 -12.92298 -12.84201 -12.47514 -12.39565 -12.21854 -12.12775 -11.92058 -11.53699 -11.40721 -11.19648 -10.78547 -10.45349 -9.70569 -9.55244 -8.97852 -8.45446 -6.14111 0.44436 0.75531 0.82836 1.29350 1.35191 1.37206 1.46882 1.51882 1.63660 2.18770 2.24097 2.87017 3.19326 3.43167 3.53658 3.77074 3.87858 4.08846 4.10376 4.13916 4.27611 4.32301 4.34173 4.42197 4.45325 4.55253 4.60579 4.65423 4.71626 4.75181 4.78455 5.01879 5.06004 5.13696 5.29834 5.48582 5.54636 5.64888 5.72596 5.75057 6.03763 6.04323 6.23764 6.62104 6.85911 6.98878 7.80320 8.77739 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.028837 B = 0.002114 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.753517 B =13240.973060 C =13892.809834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.377 5.377 3 C 0.096 3.904 4 C -0.270 4.270 5 C 0.148 3.852 6 O -0.354 6.354 7 C 0.467 3.533 8 O -0.536 6.536 9 C -0.063 4.063 10 C -0.035 4.035 11 C -0.176 4.176 12 C -0.073 4.073 13 C -0.243 4.243 14 C 0.110 3.890 15 O -0.234 6.234 16 C -0.414 4.414 17 H 0.101 0.899 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.259 1.259 22 H -0.272 1.272 23 H -0.256 1.256 24 C -0.191 4.191 25 C 0.059 3.941 26 N -0.334 5.334 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.214 0.786 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.119 0.881 38 H 0.272 0.728 39 H 0.108 0.892 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.322 1.119 2.808 28.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.158 5.158 3 C -0.053 4.053 4 C -0.282 4.282 5 C 0.074 3.926 6 O -0.271 6.271 7 C 0.311 3.689 8 O -0.425 6.425 9 C -0.100 4.100 10 C -0.036 4.036 11 C -0.194 4.194 12 C -0.091 4.091 13 C -0.262 4.262 14 C 0.060 3.940 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.839 3.161 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.180 1.180 24 C -0.210 4.210 25 C -0.127 4.127 26 N -0.155 5.155 27 H 0.107 0.893 28 H 0.137 0.863 29 H 0.109 0.891 30 H 0.230 0.770 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.146 0.854 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -28.934 -0.187 3.135 29.104 hybrid contribution 1.831 0.653 0.335 1.973 sum -27.103 0.466 3.471 27.328 Atomic orbital electron populations 1.22277 0.71495 1.06246 1.04887 1.48917 1.08248 1.03314 1.55284 1.22943 0.89998 0.94940 0.97427 1.19731 0.93977 0.93607 1.20903 1.21020 0.93606 0.98410 0.79574 1.86575 1.43941 1.63314 1.33278 1.23943 0.77417 0.74634 0.92860 1.90720 1.55911 1.51404 1.44503 1.20382 0.96423 1.02408 0.90780 1.19137 0.91858 0.94453 0.98121 1.21019 0.99376 0.92185 1.06818 1.21157 0.90962 1.00720 0.96249 1.21334 0.99465 0.93899 1.11488 1.19874 0.86360 0.93178 0.94570 1.83938 1.11527 1.36665 1.81968 1.21788 0.83805 0.90381 1.53048 0.88123 1.26619 1.00963 0.98734 0.95899 1.70188 1.23295 1.13635 1.48882 0.84637 0.74852 0.76720 0.79916 1.18297 1.19614 1.17973 1.20247 0.90961 0.98765 1.11015 1.24138 0.95649 0.94999 0.97934 1.77360 1.02157 1.09820 1.26198 0.89287 0.86297 0.89123 0.76974 0.91250 0.89753 0.85355 0.82764 0.83003 0.83426 0.86332 0.91881 0.87390 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.47 127.77 1.47 1.95 16 2 N -0.38 -5.64 4.01 -369.56 -1.48 -7.12 16 3 C 0.10 1.31 11.40 83.54 0.95 2.26 16 4 C -0.27 -5.07 5.74 -20.14 -0.12 -5.18 16 5 C 0.15 3.09 5.94 71.23 0.42 3.52 16 6 O -0.35 -8.36 10.20 -51.36 -0.52 -8.88 16 7 C 0.47 12.94 7.95 71.24 0.57 13.51 16 8 O -0.54 -19.46 15.78 21.96 0.35 -19.11 16 9 C -0.06 -1.50 5.94 29.10 0.17 -1.33 16 10 C -0.04 -1.20 4.37 -19.88 -0.09 -1.29 16 11 C -0.18 -5.49 9.70 22.30 0.22 -5.27 16 12 C -0.07 -2.55 10.04 22.25 0.22 -2.33 16 13 C -0.24 -10.94 9.17 22.39 0.21 -10.73 16 14 C 0.11 5.73 6.65 22.58 0.15 5.88 16 15 O -0.23 -14.60 9.76 -22.74 -0.22 -14.83 16 16 C -0.41 -24.81 9.49 67.92 0.64 -24.17 16 17 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 18 C -0.03 -1.45 5.49 84.83 0.47 -0.99 16 19 N -0.92 -57.88 13.67 21.61 0.30 -57.59 16 20 Si 1.02 43.78 29.55 68.60 2.03 45.80 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 24 C -0.19 -8.47 9.64 22.39 0.22 -8.25 16 25 C 0.06 1.20 11.96 85.24 1.02 2.22 16 26 N -0.33 -7.19 12.58 -57.02 -0.72 -7.90 16 27 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.12 -0.07 8.14 -2.38 -0.02 -0.09 16 29 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.21 1.15 8.06 -2.91 -0.02 1.13 16 31 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 32 H 0.08 1.59 8.13 -2.39 -0.02 1.57 16 33 H 0.13 2.68 8.08 -2.38 -0.02 2.67 16 34 H 0.15 2.33 8.08 -2.39 -0.02 2.32 16 35 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 37 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 38 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 40 H 0.19 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -85.89 358.14 7.31 -78.58 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 1.07 Total: 21.27 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 6.52 Total: -30.22 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -1.90 Total: -72.62 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.40 Total: -42.82 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -85.89 7.31 -78.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760640815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.234 kcal (2) G-P(sol) polarization free energy of solvation -85.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds