Wall clock time and date at job start Tue Mar 31 2020 10:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47235 * 2 1 4 4 C 1.50707 * 109.46977 * 240.00516 * 2 1 3 5 5 N 1.28008 * 119.99956 * 119.99991 * 4 2 1 6 6 N 1.40105 * 119.99715 * 179.97438 * 5 4 2 7 7 C 1.36876 * 127.21024 * 90.01805 * 6 5 4 8 8 S 1.76201 * 126.39933 * 0.02562 * 7 6 5 9 9 N 1.31468 * 107.19970 * 180.02562 * 7 6 5 10 10 N 1.28494 * 110.14744 * 0.02562 * 9 7 6 11 11 C 1.31322 * 110.03381 * 359.97438 * 10 9 7 12 12 C 1.47794 * 126.48090 * 180.02562 * 11 10 9 13 13 C 1.39596 * 120.14701 * 194.75235 * 12 11 10 14 14 C 1.37955 * 119.84867 * 179.74559 * 13 12 11 15 15 C 1.38367 * 120.14780 * 0.50918 * 14 13 12 16 16 C 1.38355 * 120.29512 * 359.76582 * 15 14 13 17 17 C 1.37954 * 120.14884 * 359.97438 * 16 15 14 18 18 C 1.52998 * 109.47506 * 120.00235 * 2 1 3 19 19 C 1.50703 * 109.46755 * 294.99846 * 18 2 1 20 20 H 1.07993 * 120.00362 * 0.02562 * 19 18 2 21 21 C 1.37880 * 119.99307 * 179.97438 * 19 18 2 22 22 N 1.31507 * 120.00435 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99491 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47157 * 90.00278 * 23 21 19 25 25 H 1.48502 * 109.46917 * 209.99883 * 23 21 19 26 26 H 1.48498 * 109.47466 * 329.99860 * 23 21 19 27 27 H 1.08996 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46806 * 300.00052 * 1 2 3 29 29 H 1.09002 * 109.47481 * 59.99672 * 1 2 3 30 30 H 1.08001 * 119.99436 * 299.99583 * 4 2 1 31 31 H 1.40999 * 99.99822 * 269.99492 * 8 7 6 32 32 H 1.08002 * 120.07549 * 359.97438 * 13 12 11 33 33 H 1.07997 * 119.92784 * 180.25254 * 14 13 12 34 34 H 1.07995 * 119.85134 * 179.74146 * 15 14 13 35 35 H 1.07999 * 119.92852 * 179.97438 * 16 15 14 36 36 H 1.08005 * 120.07294 * 180.02562 * 17 16 15 37 37 H 1.08997 * 109.46786 * 54.99887 * 18 2 1 38 38 H 1.09002 * 109.46956 * 174.99723 * 18 2 1 39 39 H 0.97006 * 120.00334 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 7 2.7682 -0.0882 -2.0732 6 7 3.2356 -0.7487 -3.2169 7 6 2.6219 -0.8244 -4.4380 8 16 1.0764 -0.1015 -4.8780 9 7 3.4010 -1.5371 -5.2212 10 7 4.4505 -1.9102 -4.5806 11 6 4.4092 -1.4593 -3.3479 12 6 5.4285 -1.6731 -2.2994 13 6 5.1260 -1.4072 -0.9628 14 6 6.0805 -1.6140 0.0115 15 6 7.3387 -2.0739 -0.3347 16 6 7.6469 -2.3339 -1.6582 17 6 6.7000 -2.1365 -2.6419 18 6 2.0401 -0.7213 1.2492 19 6 1.6414 0.0571 2.4765 20 1 1.0801 0.9741 2.3757 21 6 1.9926 -0.4023 3.7282 22 7 2.6748 -1.5199 3.8511 23 14 1.4978 0.5620 5.2496 24 1 0.1704 0.0935 5.7227 25 1 2.5068 0.3517 6.3187 26 1 1.4230 2.0073 4.9170 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.7714 -1.7443 -1.4015 31 1 0.2065 -1.1579 -4.5383 32 1 4.1457 -1.0440 -0.6917 33 1 5.8464 -1.4126 1.0464 34 1 8.0836 -2.2301 0.4314 35 1 8.6310 -2.6923 -1.9219 36 1 6.9419 -2.3403 -3.6746 37 1 1.6054 -1.7198 1.2950 38 1 3.1264 -0.7995 1.2054 39 1 2.9222 -1.8429 4.7317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765995773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:26 Heat of formation + Delta-G solvation = 143.262182 kcal Electronic energy + Delta-G solvation = -23403.250357 eV Core-core repulsion = 20053.641046 eV Total energy + Delta-G solvation = -3349.609311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.86944 -38.98724 -37.81135 -35.16822 -32.75810 -32.50149 -31.08999 -30.91975 -29.31321 -27.30850 -25.17052 -23.86296 -23.40387 -22.57463 -21.73018 -20.78320 -19.55541 -18.74728 -17.52212 -16.94483 -16.57831 -16.23102 -15.77847 -15.14953 -14.72944 -14.56631 -14.03795 -13.80859 -13.65513 -13.45198 -12.94909 -12.89448 -12.42340 -12.22077 -11.89204 -11.84527 -11.66999 -11.32609 -11.18831 -11.12192 -11.03310 -10.86721 -10.68182 -10.48237 -10.27326 -10.01807 -9.73388 -9.59222 -9.38590 -8.94776 -8.58158 -8.56468 -8.42725 -6.22804 -4.26481 0.57344 0.88783 1.39766 1.46527 1.49258 1.87335 2.33926 2.73365 3.19201 3.27316 3.29422 3.82559 3.87529 4.27513 4.51339 4.58479 4.93380 5.00506 5.09569 5.13142 5.14190 5.25666 5.40708 5.47716 5.58665 5.67416 5.70429 5.80017 5.91202 6.00050 6.07261 6.37608 6.41855 6.48753 6.52278 6.54448 6.64996 6.91362 7.27104 7.32959 7.53817 7.72662 8.08876 8.36148 8.77352 9.39070 10.88111 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.004617 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.474902 B = 6063.185592 C = 8420.579399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.053 4.053 3 H 0.093 0.907 4 C 0.184 3.816 5 N -0.270 5.270 6 N -0.325 5.325 7 C 0.141 3.859 8 S 0.001 5.999 9 N -0.234 5.234 10 N -0.277 5.277 11 C 0.248 3.752 12 C -0.032 4.032 13 C -0.096 4.096 14 C -0.106 4.106 15 C -0.101 4.101 16 C -0.125 4.125 17 C -0.076 4.076 18 C 0.033 3.967 19 C -0.521 4.521 20 H 0.062 0.938 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.272 1.272 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.024 0.976 38 H 0.022 0.978 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -0.609 -9.989 10.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.074 4.074 3 H 0.111 0.889 4 C -0.026 4.026 5 N -0.070 5.070 6 N -0.100 5.100 7 C -0.233 4.233 8 S 0.151 5.849 9 N -0.081 5.081 10 N -0.122 5.122 11 C -0.017 4.017 12 C -0.035 4.035 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.120 4.120 16 C -0.143 4.143 17 C -0.096 4.096 18 C -0.005 4.005 19 C -0.559 4.559 20 H 0.080 0.920 21 C -0.140 4.140 22 N -0.529 5.529 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.062 0.938 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.481 -0.027 -11.719 11.979 hybrid contribution -0.651 -0.857 2.489 2.712 sum 1.830 -0.884 -9.230 9.452 Atomic orbital electron populations 1.21709 0.92927 1.02027 1.02191 1.20821 0.96613 1.00825 0.89153 0.88894 1.28000 0.84115 0.98279 0.92204 1.75684 1.17055 1.19880 0.94338 1.48540 1.15997 1.36875 1.08580 1.26004 1.03150 1.08651 0.85453 1.87020 0.92620 1.21545 1.83705 1.74774 0.99340 1.09659 1.24312 1.74464 1.15746 1.20642 1.01322 1.23286 0.88373 0.94601 0.95478 1.17497 0.91670 1.04589 0.89754 1.21602 1.00909 0.97760 0.91327 1.21260 0.92864 0.98063 1.00257 1.21401 0.96758 0.97471 0.96388 1.21085 0.99390 1.01024 0.92770 1.21142 0.91115 0.96944 1.00375 1.19207 0.96682 0.95785 0.88818 1.21033 1.35976 1.08713 0.90205 0.91991 1.24970 0.94872 0.94992 0.99182 1.69936 1.38180 1.20895 1.23926 0.86569 0.78345 0.80441 0.82564 1.20579 1.21163 1.19697 0.92841 0.89706 0.93897 0.87153 0.93750 0.85410 0.84334 0.85466 0.85310 0.84748 0.95744 0.95929 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.99 37.16 0.33 -1.56 16 2 C -0.05 -0.87 2.75 -91.77 -0.25 -1.13 16 3 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 4 C 0.18 2.83 7.64 -13.87 -0.11 2.72 16 5 N -0.27 -4.43 10.05 32.67 0.33 -4.10 16 6 N -0.32 -5.53 3.48 -10.24 -0.04 -5.56 16 7 C 0.14 2.32 8.52 -87.87 -0.75 1.57 16 8 S 0.00 0.02 26.25 -107.50 -2.82 -2.80 16 9 N -0.23 -4.15 12.22 30.78 0.38 -3.78 16 10 N -0.28 -4.96 11.96 32.64 0.39 -4.57 16 11 C 0.25 4.31 7.81 -153.51 -1.20 3.11 16 12 C -0.03 -0.52 5.87 -104.98 -0.62 -1.13 16 13 C -0.10 -1.57 9.48 -39.18 -0.37 -1.94 16 14 C -0.11 -1.58 10.03 -39.64 -0.40 -1.98 16 15 C -0.10 -1.25 10.04 -39.49 -0.40 -1.64 16 16 C -0.12 -1.45 10.03 -39.64 -0.40 -1.85 16 17 C -0.08 -1.03 9.70 -39.18 -0.38 -1.41 16 18 C 0.03 0.70 4.43 -27.88 -0.12 0.58 16 19 C -0.52 -12.52 8.41 -34.44 -0.29 -12.81 16 20 H 0.06 1.44 7.05 -52.49 -0.37 1.07 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.89 -23.82 13.29 55.43 0.74 -23.08 16 23 Si 0.89 19.62 29.54 -169.99 -5.02 14.60 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.32 6.95 -51.93 -0.36 0.96 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.10 1.03 9.55 96.90 0.93 1.96 16 32 H 0.13 2.22 3.41 -52.49 -0.18 2.04 16 33 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.68 7.94 -52.48 -0.42 1.27 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.51 7.27 -51.93 -0.38 0.13 16 39 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -28.15 352.51 -9.07 -37.22 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.29 Total: 2.77 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -5.04 Total: -15.99 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 1.80 Total: -41.10 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.82 Total: -2.80 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.15 -9.07 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765995773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.481 kcal (2) G-P(sol) polarization free energy of solvation -28.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds