Wall clock time and date at job start Tue Mar 31 2020 10:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47235 * 2 1 4 4 C 1.50707 * 109.46977 * 240.00516 * 2 1 3 5 5 N 1.28008 * 119.99956 * 119.99991 * 4 2 1 6 6 N 1.40105 * 119.99715 * 179.97438 * 5 4 2 7 7 C 1.36876 * 127.21024 * 90.01805 * 6 5 4 8 8 S 1.76201 * 126.39933 * 0.02562 * 7 6 5 9 9 N 1.31468 * 107.19970 * 180.02562 * 7 6 5 10 10 N 1.28494 * 110.14744 * 0.02562 * 9 7 6 11 11 C 1.31322 * 110.03381 * 359.97438 * 10 9 7 12 12 C 1.47794 * 126.48090 * 180.02562 * 11 10 9 13 13 C 1.39596 * 120.14701 * 194.75235 * 12 11 10 14 14 C 1.37955 * 119.84867 * 179.74559 * 13 12 11 15 15 C 1.38367 * 120.14780 * 0.50918 * 14 13 12 16 16 C 1.38355 * 120.29512 * 359.76582 * 15 14 13 17 17 C 1.37954 * 120.14884 * 359.97438 * 16 15 14 18 18 C 1.52998 * 109.47506 * 120.00235 * 2 1 3 19 19 C 1.50703 * 109.46755 * 294.99846 * 18 2 1 20 20 H 1.07993 * 120.00362 * 0.02562 * 19 18 2 21 21 C 1.37880 * 119.99307 * 179.97438 * 19 18 2 22 22 N 1.31507 * 120.00435 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99491 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47157 * 90.00278 * 23 21 19 25 25 H 1.48502 * 109.46917 * 209.99883 * 23 21 19 26 26 H 1.48498 * 109.47466 * 329.99860 * 23 21 19 27 27 H 1.08996 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46806 * 300.00052 * 1 2 3 29 29 H 1.09002 * 109.47481 * 59.99672 * 1 2 3 30 30 H 1.08001 * 119.99436 * 299.99583 * 4 2 1 31 31 H 1.40999 * 99.99822 * 269.99492 * 8 7 6 32 32 H 1.08002 * 120.07549 * 359.97438 * 13 12 11 33 33 H 1.07997 * 119.92784 * 180.25254 * 14 13 12 34 34 H 1.07995 * 119.85134 * 179.74146 * 15 14 13 35 35 H 1.07999 * 119.92852 * 179.97438 * 16 15 14 36 36 H 1.08005 * 120.07294 * 180.02562 * 17 16 15 37 37 H 1.08997 * 109.46786 * 54.99887 * 18 2 1 38 38 H 1.09002 * 109.46956 * 174.99723 * 18 2 1 39 39 H 0.97006 * 120.00334 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 7 2.7682 -0.0882 -2.0732 6 7 3.2356 -0.7487 -3.2169 7 6 2.6219 -0.8244 -4.4380 8 16 1.0764 -0.1015 -4.8780 9 7 3.4010 -1.5371 -5.2212 10 7 4.4505 -1.9102 -4.5806 11 6 4.4092 -1.4593 -3.3479 12 6 5.4285 -1.6731 -2.2994 13 6 5.1260 -1.4072 -0.9628 14 6 6.0805 -1.6140 0.0115 15 6 7.3387 -2.0739 -0.3347 16 6 7.6469 -2.3339 -1.6582 17 6 6.7000 -2.1365 -2.6419 18 6 2.0401 -0.7213 1.2492 19 6 1.6414 0.0571 2.4765 20 1 1.0801 0.9741 2.3757 21 6 1.9926 -0.4023 3.7282 22 7 2.6748 -1.5199 3.8511 23 14 1.4978 0.5620 5.2496 24 1 0.1704 0.0935 5.7227 25 1 2.5068 0.3517 6.3187 26 1 1.4230 2.0073 4.9170 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.7714 -1.7443 -1.4015 31 1 0.2065 -1.1579 -4.5383 32 1 4.1457 -1.0440 -0.6917 33 1 5.8464 -1.4126 1.0464 34 1 8.0836 -2.2301 0.4314 35 1 8.6310 -2.6923 -1.9219 36 1 6.9419 -2.3403 -3.6746 37 1 1.6054 -1.7198 1.2950 38 1 3.1264 -0.7995 1.2054 39 1 2.9222 -1.8429 4.7317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765995773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:26 Heat of formation + Delta-G solvation = 130.732759 kcal Electronic energy + Delta-G solvation = -23403.793673 eV Core-core repulsion = 20053.641046 eV Total energy + Delta-G solvation = -3350.152627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.14377 -40.08817 -39.12646 -36.63814 -34.45346 -33.73067 -32.48035 -32.01114 -30.50899 -28.96774 -26.51756 -25.28474 -24.61125 -23.93728 -22.92431 -22.04898 -20.91885 -19.98730 -18.73893 -18.28137 -18.07327 -17.58365 -16.90717 -16.50833 -16.24262 -15.69920 -15.44945 -15.05957 -14.85164 -14.76369 -14.31062 -14.01376 -13.88973 -13.68852 -13.24797 -13.14627 -12.84169 -12.75889 -12.70194 -12.41949 -12.30909 -12.26806 -12.20973 -11.89016 -11.74467 -11.23349 -11.17948 -11.15050 -10.98447 -10.51490 -10.04244 -9.60467 -9.55370 -8.16425 -6.24383 -0.57697 -0.24920 0.18706 0.32751 0.35284 0.62529 1.25036 1.45110 1.47885 1.54509 1.56251 2.44235 2.64953 2.74005 3.19796 3.23949 3.35587 3.82586 3.83495 3.87430 4.03023 4.15040 4.16131 4.31431 4.36835 4.41549 4.53808 4.59389 4.72817 4.80389 4.99167 5.08590 5.13885 5.32314 5.39380 5.41337 5.44838 5.49878 5.61992 5.83037 5.86886 6.20612 6.27014 6.88590 7.06469 7.44258 8.94865 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.004617 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.474902 B = 6063.185592 C = 8420.579399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.040 4.040 3 H 0.088 0.912 4 C 0.194 3.806 5 N -0.275 5.275 6 N -0.332 5.332 7 C 0.139 3.861 8 S 0.014 5.986 9 N -0.255 5.255 10 N -0.291 5.291 11 C 0.240 3.760 12 C -0.053 4.053 13 C -0.116 4.116 14 C -0.124 4.124 15 C -0.092 4.092 16 C -0.111 4.111 17 C -0.077 4.077 18 C 0.040 3.960 19 C -0.526 4.526 20 H 0.070 0.930 21 C 0.010 3.990 22 N -0.927 5.927 23 Si 0.952 3.048 24 H -0.275 1.275 25 H -0.290 1.290 26 H -0.264 1.264 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.007 0.993 38 H 0.000 1.000 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 -0.257 -10.351 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.061 4.061 3 H 0.107 0.893 4 C -0.016 4.016 5 N -0.075 5.075 6 N -0.107 5.107 7 C -0.235 4.235 8 S 0.163 5.837 9 N -0.101 5.101 10 N -0.136 5.136 11 C -0.026 4.026 12 C -0.055 4.055 13 C -0.136 4.136 14 C -0.142 4.142 15 C -0.110 4.110 16 C -0.128 4.128 17 C -0.097 4.097 18 C 0.002 3.998 19 C -0.564 4.564 20 H 0.088 0.912 21 C -0.188 4.188 22 N -0.567 5.567 23 Si 0.778 3.222 24 H -0.201 1.201 25 H -0.216 1.216 26 H -0.188 1.188 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.143 0.857 34 H 0.176 0.824 35 H 0.187 0.813 36 H 0.162 0.838 37 H 0.025 0.975 38 H 0.018 0.982 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.564 0.333 -12.100 12.373 hybrid contribution -0.663 -0.982 2.574 2.834 sum 1.901 -0.650 -9.526 9.735 Atomic orbital electron populations 1.21678 0.90908 1.02771 1.03058 1.20534 0.98151 0.99811 0.87648 0.89334 1.27790 0.83701 0.98517 0.91609 1.75631 1.16961 1.20366 0.94579 1.48623 1.16194 1.37107 1.08811 1.26570 1.04151 1.07812 0.85005 1.86938 0.91041 1.22193 1.83493 1.74716 0.99798 1.10731 1.24894 1.74390 1.16228 1.21315 1.01670 1.23606 0.88784 0.94520 0.95652 1.17643 0.92573 1.06115 0.89208 1.21525 1.00729 0.99276 0.92073 1.21288 0.94154 0.99350 0.99382 1.21751 0.95987 0.95569 0.97698 1.21517 1.00468 0.99102 0.91750 1.21406 0.90520 0.96252 1.01518 1.19007 0.95206 0.95140 0.90488 1.21467 1.34975 1.08854 0.91110 0.91212 1.25740 0.95148 0.95841 1.02112 1.70057 1.39812 1.22538 1.24307 0.85637 0.77848 0.79526 0.79196 1.20104 1.21600 1.18817 0.92202 0.90713 0.91098 0.86087 0.91157 0.87175 0.85662 0.82368 0.81254 0.83760 0.97481 0.98201 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 8.99 71.98 0.65 -2.83 16 2 C -0.04 -1.32 2.75 -11.54 -0.03 -1.35 16 3 H 0.09 3.02 8.11 -2.38 -0.02 3.00 16 4 C 0.19 5.94 7.64 88.67 0.68 6.61 16 5 N -0.28 -9.04 10.05 -50.46 -0.51 -9.55 16 6 N -0.33 -11.29 3.48 -186.31 -0.65 -11.94 16 7 C 0.14 4.47 8.52 179.39 1.53 5.99 16 8 S 0.01 0.34 26.25 -56.49 -1.48 -1.14 16 9 N -0.26 -9.02 12.22 -56.54 -0.69 -9.71 16 10 N -0.29 -10.50 11.96 -50.66 -0.61 -11.10 16 11 C 0.24 8.42 7.81 136.10 1.06 9.48 16 12 C -0.05 -1.69 5.87 -20.09 -0.12 -1.81 16 13 C -0.12 -3.91 9.48 22.53 0.21 -3.69 16 14 C -0.12 -3.74 10.03 22.23 0.22 -3.51 16 15 C -0.09 -2.08 10.04 22.33 0.22 -1.86 16 16 C -0.11 -2.28 10.03 22.23 0.22 -2.06 16 17 C -0.08 -2.00 9.70 22.53 0.22 -1.78 16 18 C 0.04 1.73 4.43 29.85 0.13 1.87 16 19 C -0.53 -25.43 8.41 25.60 0.22 -25.22 16 20 H 0.07 3.20 7.05 -2.91 -0.02 3.18 16 21 C 0.01 0.52 5.46 84.66 0.46 0.98 16 22 N -0.93 -50.69 13.29 21.45 0.28 -50.40 16 23 Si 0.95 40.24 29.54 68.60 2.03 42.26 16 24 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 25 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 2.23 6.95 -2.39 -0.02 2.21 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.12 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.12 2.29 9.55 73.80 0.70 2.99 16 32 H 0.11 4.03 3.41 -2.91 -0.01 4.02 16 33 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.14 3.41 7.94 -2.91 -0.02 3.39 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.00 -0.02 7.27 -2.39 -0.02 -0.03 16 39 H 0.26 13.70 8.31 -92.70 -0.77 12.93 16 Total: -1.00 -61.70 352.51 5.85 -55.85 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.80 Total: 14.89 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 5.68 Total: -19.17 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -2.17 Total: -92.70 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.48 Total: -1.14 kcal Total: -61.70 5.85 -55.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765995773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.586 kcal (2) G-P(sol) polarization free energy of solvation -61.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds