Wall clock time and date at job start Tue Mar 31 2020 11:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38232 * 120.00062 * 269.72409 * 4 3 2 6 6 C 1.38236 * 119.99730 * 179.74960 * 5 4 3 7 7 C 1.38230 * 120.00062 * 0.55138 * 6 5 4 8 8 C 1.50707 * 120.00124 * 179.72758 * 7 6 5 9 9 F 1.39897 * 109.46997 * 269.97639 * 8 7 6 10 10 F 1.39903 * 109.47013 * 29.97461 * 8 7 6 11 11 F 1.39896 * 109.46967 * 149.97386 * 8 7 6 12 12 C 1.38233 * 119.99927 * 359.70177 * 7 6 5 13 13 C 1.38228 * 120.00039 * 0.02562 * 12 7 6 14 14 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 15 15 O 1.21593 * 120.00167 * 179.97438 * 14 2 1 16 16 N 1.34780 * 120.00532 * 359.97438 * 14 2 1 17 17 C 1.46496 * 120.00367 * 179.97438 * 16 14 2 18 18 C 1.50701 * 109.47414 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99799 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00288 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99934 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00097 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47027 * 60.00171 * 22 20 18 24 24 H 1.48500 * 109.47261 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46998 * 300.00381 * 22 20 18 26 26 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 28 28 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 29 29 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 30 30 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 31 31 H 1.07999 * 120.00321 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.99761 * 180.27139 * 6 5 4 33 33 H 1.07999 * 119.99981 * 180.02562 * 12 7 6 34 34 H 1.08006 * 119.99980 * 179.97438 * 13 12 7 35 35 H 0.97000 * 119.99501 * 0.02562 * 16 14 2 36 36 H 1.09004 * 109.47298 * 300.00557 * 17 16 14 37 37 H 1.09000 * 109.47160 * 60.00094 * 17 16 14 38 38 H 0.96991 * 120.00138 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5299 2.5064 2.0706 6 6 1.7579 2.9011 3.3757 7 6 2.9100 2.5024 4.0271 8 6 3.1615 2.9377 5.4478 9 9 3.8612 4.1491 5.4474 10 9 1.9392 3.1054 6.1074 11 9 3.9174 1.9627 6.1074 12 6 3.8313 1.7039 3.3755 13 6 3.6007 1.3046 2.0724 14 6 2.1388 -1.1672 -0.0005 15 8 3.3548 -1.1673 -0.0010 16 7 1.4650 -2.3344 -0.0005 17 6 2.1974 -3.6032 -0.0017 18 6 1.2181 -4.7486 -0.0008 19 1 0.1562 -4.5512 0.0001 20 6 1.6776 -6.0485 -0.0021 21 7 2.9707 -6.2889 -0.0037 22 14 0.4637 -7.4683 -0.0018 23 1 -0.3913 -7.3888 -1.2134 24 1 1.2062 -8.7544 -0.0028 25 1 -0.3888 -7.3904 1.2117 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 3.1500 1.1383 -0.5139 30 1 1.6085 2.0284 -0.5138 31 1 0.6323 2.8223 1.5599 32 1 1.0379 3.5247 3.8848 33 1 4.7313 1.3921 3.8846 34 1 4.3208 0.6811 1.5632 35 1 0.4949 -2.3344 -0.0005 36 1 2.8235 -3.6605 -0.8921 37 1 2.8247 -3.6613 0.8878 38 1 3.2940 -7.2033 -0.0043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787350699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:03 Heat of formation + Delta-G solvation = -172.441231 kcal Electronic energy + Delta-G solvation = -25835.677948 eV Core-core repulsion = 21455.476348 eV Total energy + Delta-G solvation = -4380.201600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.22659 -48.74776 -48.68970 -41.28667 -40.19820 -36.77786 -36.11438 -34.47969 -33.31314 -32.11231 -29.69116 -28.73239 -27.21430 -25.68956 -24.28597 -23.91118 -22.38558 -20.95872 -19.60814 -19.53936 -19.45639 -19.32703 -17.97243 -17.49829 -17.21650 -16.55729 -16.28758 -16.09979 -15.62274 -15.53666 -15.43895 -15.15520 -15.12519 -14.94579 -14.85509 -14.85249 -14.52122 -14.39513 -14.02898 -13.80714 -13.65484 -13.42441 -13.29583 -12.93801 -12.76171 -12.66794 -12.38814 -12.21871 -12.06469 -11.48991 -11.16343 -10.78195 -10.15028 -10.06011 -9.99991 -9.42315 -8.27839 -6.44503 -0.18234 0.27646 1.43509 1.47938 1.55913 1.60332 1.82660 2.25411 2.38347 2.54766 2.66843 2.97314 3.07073 3.30964 3.37968 3.76181 3.79076 3.87533 4.18410 4.32234 4.35702 4.51112 4.61178 4.72123 4.80583 4.92756 4.94793 5.07337 5.13279 5.17553 5.28212 5.43670 5.52120 5.60833 5.72698 5.78364 5.86394 6.11835 6.67109 7.21232 7.26154 7.73500 8.84265 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.016976 B = 0.002855 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.009787 B = 9804.890291 C =10501.686573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.626 5.626 3 C 0.167 3.833 4 C -0.077 4.077 5 C -0.095 4.095 6 C -0.074 4.074 7 C -0.194 4.194 8 C 0.512 3.488 9 F -0.179 7.179 10 F -0.176 7.176 11 F -0.185 7.185 12 C -0.086 4.086 13 C -0.115 4.115 14 C 0.688 3.312 15 O -0.641 6.641 16 N -0.725 5.725 17 C 0.288 3.712 18 C -0.556 4.556 19 H 0.083 0.917 20 C 0.004 3.996 21 N -0.931 5.931 22 Si 0.985 3.015 23 H -0.260 1.260 24 H -0.286 1.286 25 H -0.263 1.263 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.174 0.826 32 H 0.160 0.840 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.403 0.597 36 H -0.015 1.015 37 H -0.018 1.018 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 22.881 5.374 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.363 5.363 3 C 0.044 3.956 4 C -0.079 4.079 5 C -0.113 4.113 6 C -0.092 4.092 7 C -0.195 4.195 8 C 0.458 3.542 9 F -0.160 7.160 10 F -0.157 7.157 11 F -0.166 7.166 12 C -0.104 4.104 13 C -0.134 4.134 14 C 0.390 3.610 15 O -0.523 6.523 16 N -0.380 5.380 17 C 0.164 3.836 18 C -0.594 4.594 19 H 0.101 0.899 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.808 3.192 23 H -0.185 1.185 24 H -0.211 1.211 25 H -0.187 1.187 26 H 0.080 0.920 27 H 0.132 0.868 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.191 0.809 32 H 0.178 0.822 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.240 0.760 36 H 0.003 0.997 37 H 0.000 1.000 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.192 22.727 5.389 24.439 hybrid contribution 0.110 -1.138 0.470 1.236 sum -7.082 21.589 5.859 23.464 Atomic orbital electron populations 1.22034 0.77161 1.04882 1.02832 1.47067 1.07782 1.03300 1.78163 1.20453 0.98821 0.84433 0.91862 1.20744 0.93787 0.95549 0.97815 1.21389 0.99657 0.96504 0.93721 1.21247 0.94845 0.97924 0.95172 1.20061 1.00413 1.06247 0.92801 1.18311 0.73909 0.74734 0.87220 1.93214 1.79574 1.46244 1.96971 1.93183 1.44032 1.95387 1.83114 1.93185 1.76966 1.63225 1.83260 1.21000 0.98935 0.95613 0.94852 1.21243 0.98674 0.98973 0.94507 1.16341 0.85143 0.81628 0.77937 1.90817 1.13940 1.87088 1.60449 1.45463 1.10239 1.04656 1.77617 1.18354 0.91741 0.79755 0.93727 1.21565 0.93824 0.90967 1.53008 0.89942 1.26059 0.97364 1.02249 0.93848 1.70136 1.15165 1.21734 1.49897 0.85211 0.77995 0.76507 0.79523 1.18494 1.21143 1.18717 0.91993 0.86802 0.91553 0.90999 0.84632 0.80851 0.82220 0.84939 0.86745 0.76030 0.99710 1.00033 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 10.25 127.77 1.31 2.54 16 2 N -0.63 -16.82 2.86 -869.28 -2.48 -19.31 16 3 C 0.17 3.57 5.58 85.63 0.48 4.05 16 4 C -0.08 -1.69 5.46 -19.87 -0.11 -1.80 16 5 C -0.09 -1.45 9.70 22.27 0.22 -1.23 16 6 C -0.07 -1.24 9.40 22.27 0.21 -1.03 16 7 C -0.19 -4.20 5.45 -19.86 -0.11 -4.31 16 8 C 0.51 10.98 3.36 71.24 0.24 11.22 16 9 F -0.18 -3.81 17.30 44.97 0.78 -3.03 16 10 F -0.18 -3.58 16.46 44.97 0.74 -2.84 16 11 F -0.18 -4.47 16.46 44.97 0.74 -3.73 16 12 C -0.09 -2.15 9.40 22.27 0.21 -1.94 16 13 C -0.12 -3.17 9.70 22.27 0.22 -2.96 16 14 C 0.69 28.04 8.28 179.06 1.48 29.52 16 15 O -0.64 -31.86 15.45 -4.01 -0.06 -31.92 16 16 N -0.72 -31.27 5.41 -482.29 -2.61 -33.88 16 17 C 0.29 16.02 5.43 85.63 0.46 16.49 16 18 C -0.56 -30.35 9.28 25.60 0.24 -30.12 16 19 H 0.08 4.05 7.60 -2.91 -0.02 4.02 16 20 C 0.00 0.25 5.46 84.65 0.46 0.71 16 21 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 22 Si 0.98 42.19 29.54 68.60 2.03 44.22 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.11 0.97 7.89 -2.38 -0.02 0.95 16 28 H 0.07 1.22 6.36 -2.39 -0.02 1.20 16 29 H 0.07 1.92 7.36 -2.39 -0.02 1.90 16 30 H 0.14 1.53 7.84 -2.39 -0.02 1.51 16 31 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.16 1.81 7.60 -2.91 -0.02 1.79 16 33 H 0.13 3.18 7.60 -2.91 -0.02 3.16 16 34 H 0.11 3.77 7.58 -2.91 -0.02 3.75 16 35 H 0.40 14.42 6.05 -92.71 -0.56 13.86 16 36 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 37 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 38 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -75.40 341.52 5.27 -70.13 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.55 Total: 15.40 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 5.31 Total: 21.13 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -4.81 Total: -109.36 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.06 Total: -31.92 kcal Atomic # 9 Polarization: -11.86 SS G_CDS: 2.26 Total: -9.60 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -75.40 5.27 -70.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.314 kcal (2) G-P(sol) polarization free energy of solvation -75.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds