Wall clock time and date at job start Tue Mar 31 2020 11:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34065 * 125.14845 * 2 1 4 4 C 1.38109 * 107.87707 * 179.70246 * 3 2 1 5 5 C 1.47090 * 126.82931 * 180.30358 * 4 3 2 6 6 O 1.21548 * 119.99880 * 173.74212 * 5 4 3 7 7 O 1.34775 * 119.99896 * 353.73524 * 5 4 3 8 8 C 1.45202 * 117.00327 * 185.35093 * 7 5 4 9 9 C 1.53002 * 109.47668 * 183.72523 * 8 7 5 10 10 C 1.50704 * 115.54709 * 305.79452 * 9 8 7 11 11 H 1.08003 * 119.99566 * 144.14196 * 10 9 8 12 12 C 1.37873 * 119.99967 * 324.13636 * 10 9 8 13 13 N 1.31513 * 120.00255 * 349.35448 * 12 10 9 14 14 Si 1.86805 * 119.99615 * 169.35307 * 12 10 9 15 15 H 1.48500 * 109.46879 * 90.00481 * 14 12 10 16 16 H 1.48504 * 109.47084 * 209.99842 * 14 12 10 17 17 H 1.48498 * 109.47381 * 330.00159 * 14 12 10 18 18 C 1.52992 * 117.49826 * 160.12092 * 9 8 7 19 19 C 1.52999 * 117.49462 * 91.46145 * 9 8 7 20 20 C 1.46644 * 106.34676 * 0.42849 * 4 3 2 21 21 C 1.48310 * 126.52106 * 179.83463 * 20 4 3 22 22 C 1.46739 * 127.11611 * 144.71619 * 21 20 4 23 23 C 1.34361 * 106.02116 * 179.97438 * 22 21 20 24 24 O 1.34153 * 109.00350 * 359.97438 * 23 22 21 25 25 C 1.34084 * 110.75915 * 0.02562 * 24 23 22 26 26 N 1.31356 * 106.95644 * 359.57144 * 20 4 3 27 27 H 1.09000 * 109.46977 * 269.99181 * 1 2 3 28 28 H 1.08999 * 109.46928 * 29.99525 * 1 2 3 29 29 H 1.09001 * 109.47102 * 149.99080 * 1 2 3 30 30 H 1.08002 * 126.06157 * 0.02562 * 3 2 1 31 31 H 1.08994 * 109.47410 * 303.73438 * 8 7 5 32 32 H 1.09009 * 109.46602 * 63.72704 * 8 7 5 33 33 H 0.97006 * 119.99924 * 185.04100 * 13 12 10 34 34 H 1.08996 * 117.50277 * 359.97438 * 18 9 8 35 35 H 1.09002 * 117.50018 * 145.02326 * 18 9 8 36 36 H 1.09004 * 117.49421 * 214.97980 * 19 9 8 37 37 H 1.08998 * 117.50179 * 359.97438 * 19 9 8 38 38 H 1.07998 * 126.98707 * 359.69845 * 22 21 20 39 39 H 1.07997 * 125.49405 * 179.97438 * 23 22 21 40 40 H 1.07994 * 125.77674 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2368 1.0962 0.0000 4 6 3.5556 0.6862 0.0068 5 6 4.7471 1.5486 0.0155 6 8 5.8522 1.0571 0.1357 7 8 4.6133 2.8839 -0.1098 8 6 5.8349 3.6620 -0.2131 9 6 5.4888 5.1518 -0.2542 10 6 4.5044 5.5612 -1.3194 11 1 3.7849 6.3411 -1.1186 12 6 4.5225 4.9401 -2.5502 13 7 5.5201 4.1455 -2.8712 14 14 3.1299 5.2271 -3.7617 15 1 3.4551 6.3927 -4.6224 16 1 2.9541 4.0201 -4.6088 17 1 1.8737 5.4967 -3.0171 18 6 6.5968 6.1445 0.1030 19 6 5.4416 5.9030 1.0778 20 6 3.5320 -0.7801 0.0006 21 6 4.7095 -1.6818 0.0010 22 6 4.8294 -2.9813 0.6719 23 6 6.0654 -3.4292 0.3946 24 8 6.6944 -2.5277 -0.3745 25 6 5.8999 -1.4760 -0.6204 26 7 2.2695 -1.1429 0.0003 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5140 30 1 1.8889 2.1187 0.0004 31 1 6.4685 3.4599 0.6504 32 1 6.3649 3.3868 -1.1250 33 1 5.5708 3.7666 -3.7627 34 1 7.5722 5.7364 0.3677 35 1 6.6136 7.0940 -0.4322 36 1 4.6988 6.6937 1.1835 37 1 5.6566 5.3359 1.9834 38 1 4.0785 -3.4751 1.2708 39 1 6.4849 -4.3640 0.7359 40 1 6.1620 -0.6114 -1.2121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789437505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:37 Heat of formation + Delta-G solvation = 40.373421 kcal Electronic energy + Delta-G solvation = -26208.892751 eV Core-core repulsion = 22379.776226 eV Total energy + Delta-G solvation = -3829.116524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.16878 -40.88936 -39.01920 -36.65634 -34.94069 -33.95370 -32.17198 -32.01642 -30.46010 -29.54067 -27.10862 -26.25042 -25.32497 -23.21964 -22.00985 -21.28394 -21.10553 -20.05384 -19.18269 -19.16051 -17.63671 -16.89041 -16.53954 -15.95909 -15.79949 -15.61058 -15.24606 -14.99031 -14.63253 -14.44700 -13.84451 -13.60190 -13.12536 -13.03038 -12.89377 -12.68188 -12.55011 -12.11082 -11.89112 -11.86224 -11.47881 -11.00608 -10.89181 -10.83508 -10.51768 -10.33929 -10.16330 -9.88058 -9.43143 -9.41343 -9.14229 -9.09728 -8.77084 -8.61189 -8.12985 -8.10131 -6.06156 -4.10381 1.63002 1.67248 2.17596 2.33877 3.02702 3.23438 3.27231 3.31747 3.33919 3.62223 3.84731 4.33527 4.36995 4.59490 4.89652 4.97728 4.99655 5.03270 5.24736 5.27558 5.45621 5.49829 5.54860 5.70241 5.85469 6.03310 6.08200 6.23588 6.35349 6.39223 6.50717 6.58050 6.64662 6.66567 6.82393 6.87788 6.99687 7.26012 7.29310 7.42268 7.60362 7.63778 7.88630 8.33722 8.74939 8.86584 9.49428 10.95498 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.004657 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.476514 B = 6010.612869 C = 6965.728062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.371 5.371 3 C 0.133 3.867 4 C -0.267 4.267 5 C 0.537 3.463 6 O -0.532 6.532 7 O -0.324 6.324 8 C 0.117 3.883 9 C 0.049 3.951 10 C -0.483 4.483 11 H 0.061 0.939 12 C 0.077 3.923 13 N -0.881 5.881 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.192 4.192 19 C -0.210 4.210 20 C 0.207 3.793 21 C -0.139 4.139 22 C -0.186 4.186 23 C -0.052 4.052 24 O -0.180 6.180 25 C 0.053 3.947 26 N -0.292 5.292 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.197 0.803 31 H 0.028 0.972 32 H 0.113 0.887 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.149 0.851 39 H 0.202 0.798 40 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 -11.070 5.351 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.150 5.150 3 C -0.016 4.016 4 C -0.280 4.280 5 C 0.382 3.618 6 O -0.424 6.424 7 O -0.239 6.239 8 C 0.044 3.956 9 C 0.048 3.952 10 C -0.520 4.520 11 H 0.079 0.921 12 C -0.126 4.126 13 N -0.518 5.518 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.231 4.231 19 C -0.247 4.247 20 C 0.039 3.961 21 C -0.143 4.143 22 C -0.206 4.206 23 C -0.118 4.118 24 O -0.075 6.075 25 C -0.018 4.018 26 N -0.112 5.112 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.214 0.786 31 H 0.046 0.954 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.167 0.833 39 H 0.218 0.782 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.815 -12.336 5.159 15.008 hybrid contribution -0.408 1.035 -0.461 1.204 sum -7.223 -11.301 4.698 14.211 Atomic orbital electron populations 1.21971 0.73633 1.04953 1.03698 1.48087 1.07117 1.03476 1.56288 1.23257 0.90363 0.93730 0.94254 1.20520 0.91755 0.91553 1.24179 1.19769 0.87121 0.82159 0.72705 1.90712 1.27419 1.75929 1.48382 1.86528 1.39265 1.16624 1.81439 1.22803 0.82184 0.89296 1.01277 1.18888 0.96565 0.87385 0.92343 1.20401 1.15555 1.19625 0.96395 0.92062 1.24903 0.95524 0.94182 0.98023 1.69779 1.29808 1.32339 1.19920 0.86584 0.82891 0.77637 0.80887 1.20691 1.21111 1.19715 1.22960 0.92808 1.02743 1.04539 1.22958 1.02191 1.05114 0.94443 1.20774 0.90180 0.89491 0.95632 1.18837 0.92819 0.95650 1.06981 1.22708 0.97985 0.95295 1.04616 1.23769 0.93142 0.95834 0.99087 1.83929 1.41923 1.26167 1.55526 1.24519 0.88020 0.89604 0.99610 1.77310 1.01061 1.06611 1.26240 0.90393 0.88872 0.89090 0.78640 0.95391 0.86974 0.92702 0.91459 0.89833 0.90399 0.91307 0.83282 0.78167 0.76757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 11.39 59.85 0.68 1.49 16 2 N -0.37 -5.14 3.95 -67.63 -0.27 -5.41 16 3 C 0.13 2.05 11.29 -16.62 -0.19 1.86 16 4 C -0.27 -5.02 6.31 -102.96 -0.65 -5.67 16 5 C 0.54 11.62 7.93 34.32 0.27 11.89 16 6 O -0.53 -12.00 13.01 -19.30 -0.25 -12.25 16 7 O -0.32 -7.58 9.76 -40.69 -0.40 -7.97 16 8 C 0.12 2.85 4.64 37.16 0.17 3.02 16 9 C 0.05 1.19 2.11 -155.66 -0.33 0.86 16 10 C -0.48 -12.68 8.77 -34.44 -0.30 -12.98 16 11 H 0.06 1.60 7.84 -52.48 -0.41 1.19 16 12 C 0.08 2.01 5.22 -17.82 -0.09 1.92 16 13 N -0.88 -23.87 10.79 55.43 0.60 -23.28 16 14 Si 0.89 20.29 29.55 -169.99 -5.02 15.27 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 C -0.19 -4.25 9.96 -26.70 -0.27 -4.52 16 19 C -0.21 -4.48 9.92 -26.69 -0.26 -4.75 16 20 C 0.21 3.73 7.34 -80.54 -0.59 3.14 16 21 C -0.14 -2.38 6.03 -103.18 -0.62 -3.00 16 22 C -0.19 -2.60 11.15 -37.52 -0.42 -3.02 16 23 C -0.05 -0.64 12.04 29.36 0.35 -0.29 16 24 O -0.18 -2.71 10.55 6.70 0.07 -2.64 16 25 C 0.05 0.89 10.28 29.88 0.31 1.20 16 26 N -0.29 -4.83 12.50 34.59 0.43 -4.39 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.20 2.58 8.06 -52.49 -0.42 2.16 16 31 H 0.03 0.65 7.95 -51.93 -0.41 0.24 16 32 H 0.11 2.99 6.02 -51.92 -0.31 2.68 16 33 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.22 3.76 6.62 -52.49 -0.35 3.42 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -31.94 353.70 -6.29 -38.23 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.85 Total: 5.94 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.94 Total: -8.83 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.76 Total: -33.08 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.58 Total: -22.86 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.94 -6.29 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789437505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.599 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds