Wall clock time and date at job start Tue Mar 31 2020 11:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34065 * 125.14845 * 2 1 4 4 C 1.38109 * 107.87707 * 179.70246 * 3 2 1 5 5 C 1.47090 * 126.82931 * 180.30358 * 4 3 2 6 6 O 1.21548 * 119.99880 * 173.74212 * 5 4 3 7 7 O 1.34775 * 119.99896 * 353.73524 * 5 4 3 8 8 C 1.45202 * 117.00327 * 185.35093 * 7 5 4 9 9 C 1.53002 * 109.47668 * 183.72523 * 8 7 5 10 10 C 1.50704 * 115.54709 * 305.79452 * 9 8 7 11 11 H 1.08003 * 119.99566 * 144.14196 * 10 9 8 12 12 C 1.37873 * 119.99967 * 324.13636 * 10 9 8 13 13 N 1.31513 * 120.00255 * 349.35448 * 12 10 9 14 14 Si 1.86805 * 119.99615 * 169.35307 * 12 10 9 15 15 H 1.48500 * 109.46879 * 90.00481 * 14 12 10 16 16 H 1.48504 * 109.47084 * 209.99842 * 14 12 10 17 17 H 1.48498 * 109.47381 * 330.00159 * 14 12 10 18 18 C 1.52992 * 117.49826 * 160.12092 * 9 8 7 19 19 C 1.52999 * 117.49462 * 91.46145 * 9 8 7 20 20 C 1.46644 * 106.34676 * 0.42849 * 4 3 2 21 21 C 1.48310 * 126.52106 * 179.83463 * 20 4 3 22 22 C 1.46739 * 127.11611 * 144.71619 * 21 20 4 23 23 C 1.34361 * 106.02116 * 179.97438 * 22 21 20 24 24 O 1.34153 * 109.00350 * 359.97438 * 23 22 21 25 25 C 1.34084 * 110.75915 * 0.02562 * 24 23 22 26 26 N 1.31356 * 106.95644 * 359.57144 * 20 4 3 27 27 H 1.09000 * 109.46977 * 269.99181 * 1 2 3 28 28 H 1.08999 * 109.46928 * 29.99525 * 1 2 3 29 29 H 1.09001 * 109.47102 * 149.99080 * 1 2 3 30 30 H 1.08002 * 126.06157 * 0.02562 * 3 2 1 31 31 H 1.08994 * 109.47410 * 303.73438 * 8 7 5 32 32 H 1.09009 * 109.46602 * 63.72704 * 8 7 5 33 33 H 0.97006 * 119.99924 * 185.04100 * 13 12 10 34 34 H 1.08996 * 117.50277 * 359.97438 * 18 9 8 35 35 H 1.09002 * 117.50018 * 145.02326 * 18 9 8 36 36 H 1.09004 * 117.49421 * 214.97980 * 19 9 8 37 37 H 1.08998 * 117.50179 * 359.97438 * 19 9 8 38 38 H 1.07998 * 126.98707 * 359.69845 * 22 21 20 39 39 H 1.07997 * 125.49405 * 179.97438 * 23 22 21 40 40 H 1.07994 * 125.77674 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2368 1.0962 0.0000 4 6 3.5556 0.6862 0.0068 5 6 4.7471 1.5486 0.0155 6 8 5.8522 1.0571 0.1357 7 8 4.6133 2.8839 -0.1098 8 6 5.8349 3.6620 -0.2131 9 6 5.4888 5.1518 -0.2542 10 6 4.5044 5.5612 -1.3194 11 1 3.7849 6.3411 -1.1186 12 6 4.5225 4.9401 -2.5502 13 7 5.5201 4.1455 -2.8712 14 14 3.1299 5.2271 -3.7617 15 1 3.4551 6.3927 -4.6224 16 1 2.9541 4.0201 -4.6088 17 1 1.8737 5.4967 -3.0171 18 6 6.5968 6.1445 0.1030 19 6 5.4416 5.9030 1.0778 20 6 3.5320 -0.7801 0.0006 21 6 4.7095 -1.6818 0.0010 22 6 4.8294 -2.9813 0.6719 23 6 6.0654 -3.4292 0.3946 24 8 6.6944 -2.5277 -0.3745 25 6 5.8999 -1.4760 -0.6204 26 7 2.2695 -1.1429 0.0003 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5140 30 1 1.8889 2.1187 0.0004 31 1 6.4685 3.4599 0.6504 32 1 6.3649 3.3868 -1.1250 33 1 5.5708 3.7666 -3.7627 34 1 7.5722 5.7364 0.3677 35 1 6.6136 7.0940 -0.4322 36 1 4.6988 6.6937 1.1835 37 1 5.6566 5.3359 1.9834 38 1 4.0785 -3.4751 1.2708 39 1 6.4849 -4.3640 0.7359 40 1 6.1620 -0.6114 -1.2121 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789437505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:36 Heat of formation + Delta-G solvation = 22.571445 kcal Electronic energy + Delta-G solvation = -26209.664702 eV Core-core repulsion = 22379.776226 eV Total energy + Delta-G solvation = -3829.888476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.31621 -42.13961 -40.70412 -38.44495 -36.66731 -35.11750 -34.14218 -33.09569 -31.77698 -30.63684 -28.57898 -27.69572 -27.19652 -24.62813 -23.16633 -22.97135 -22.35335 -21.37559 -21.05353 -20.42623 -18.95135 -18.37829 -18.28036 -17.39281 -17.19959 -16.89481 -16.59579 -16.52702 -16.25069 -15.76490 -15.44607 -14.87724 -14.82603 -14.07800 -13.93745 -13.80932 -13.75897 -13.61751 -13.49356 -13.26282 -13.06202 -12.83201 -12.71765 -12.29814 -12.14111 -12.08617 -11.67344 -11.34935 -11.28479 -11.10513 -11.02364 -10.62197 -10.29344 -10.03233 -9.84265 -9.32217 -8.02708 -6.13305 0.27652 0.40269 1.09134 1.28140 1.43625 1.46382 1.55945 1.73312 2.03666 2.14935 2.33294 2.45284 3.06754 3.23035 3.43197 3.63924 3.91348 4.04118 4.08076 4.19248 4.28697 4.40313 4.43175 4.46596 4.51750 4.56500 4.66535 4.69257 4.82820 4.89673 4.94266 5.03934 5.13358 5.21650 5.24502 5.45055 5.48303 5.54783 5.78475 5.86661 5.87171 6.15111 6.37599 6.38761 6.83124 7.08989 7.48840 8.97157 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.004657 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.476514 B = 6010.612869 C = 6965.728062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.356 5.356 3 C 0.150 3.850 4 C -0.309 4.309 5 C 0.532 3.468 6 O -0.552 6.552 7 O -0.334 6.334 8 C 0.128 3.872 9 C 0.012 3.988 10 C -0.496 4.496 11 H 0.059 0.941 12 C 0.034 3.966 13 N -0.907 5.907 14 Si 0.949 3.051 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.259 1.259 18 C -0.188 4.188 19 C -0.186 4.186 20 C 0.194 3.806 21 C -0.158 4.158 22 C -0.203 4.203 23 C -0.030 4.030 24 O -0.187 6.187 25 C 0.029 3.971 26 N -0.299 5.299 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.220 0.780 31 H 0.029 0.971 32 H 0.082 0.918 33 H 0.259 0.741 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.168 0.832 39 H 0.253 0.747 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 -11.743 6.280 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.134 5.134 3 C -0.002 4.002 4 C -0.322 4.322 5 C 0.379 3.621 6 O -0.446 6.446 7 O -0.248 6.248 8 C 0.055 3.945 9 C 0.012 3.988 10 C -0.533 4.533 11 H 0.077 0.923 12 C -0.166 4.166 13 N -0.545 5.545 14 Si 0.775 3.225 15 H -0.205 1.205 16 H -0.216 1.216 17 H -0.183 1.183 18 C -0.226 4.226 19 C -0.223 4.223 20 C 0.027 3.973 21 C -0.161 4.161 22 C -0.222 4.222 23 C -0.095 4.095 24 O -0.083 6.083 25 C -0.042 4.042 26 N -0.120 5.120 27 H 0.120 0.880 28 H 0.138 0.862 29 H 0.120 0.880 30 H 0.237 0.763 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.186 0.814 39 H 0.268 0.732 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -8.967 -13.016 6.101 16.943 hybrid contribution 0.183 1.185 -0.698 1.387 sum -8.783 -11.831 5.404 15.695 Atomic orbital electron populations 1.22521 0.70091 1.06908 1.05893 1.48579 1.08863 1.02281 1.53701 1.23532 0.89416 0.94979 0.92253 1.20514 0.92066 0.91812 1.27802 1.20280 0.88082 0.81707 0.72031 1.90688 1.28498 1.75948 1.49426 1.86515 1.38716 1.17615 1.81981 1.22499 0.82571 0.89732 0.99733 1.19019 0.98030 0.87647 0.94137 1.20631 1.15929 1.19651 0.97103 0.92313 1.25566 0.97332 0.94085 0.99619 1.69939 1.31339 1.33294 1.19965 0.85692 0.80816 0.77169 0.78869 1.20464 1.21563 1.18280 1.22967 0.93266 1.01880 1.04519 1.22967 1.01469 1.04237 0.93652 1.20969 0.90989 0.89321 0.96066 1.19194 0.92613 0.96982 1.07321 1.22965 0.99417 0.94350 1.05487 1.24753 0.92352 0.96023 0.96355 1.83922 1.42043 1.26207 1.56124 1.24184 0.88746 0.90250 1.00999 1.77255 1.00657 1.07798 1.26258 0.88020 0.86179 0.87969 0.76344 0.95259 0.89998 0.93151 0.90387 0.89924 0.89438 0.89762 0.81405 0.73153 0.78766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 11.39 127.77 1.46 2.55 16 2 N -0.36 -9.15 3.95 -367.88 -1.45 -10.60 16 3 C 0.15 4.45 11.29 84.32 0.95 5.40 16 4 C -0.31 -11.83 6.31 -18.79 -0.12 -11.95 16 5 C 0.53 23.98 7.93 70.14 0.56 24.53 16 6 O -0.55 -26.39 13.01 19.68 0.26 -26.13 16 7 O -0.33 -16.01 9.76 -56.86 -0.55 -16.56 16 8 C 0.13 6.42 4.64 71.98 0.33 6.75 16 9 C 0.01 0.59 2.11 -52.93 -0.11 0.48 16 10 C -0.50 -26.08 8.77 25.60 0.22 -25.86 16 11 H 0.06 3.03 7.84 -2.91 -0.02 3.01 16 12 C 0.03 1.80 5.22 84.65 0.44 2.25 16 13 N -0.91 -50.55 10.79 21.45 0.23 -50.32 16 14 Si 0.95 41.56 29.55 68.60 2.03 43.58 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 17 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 18 C -0.19 -8.22 9.96 30.62 0.30 -7.92 16 19 C -0.19 -7.70 9.92 30.62 0.30 -7.40 16 20 C 0.19 7.07 7.34 44.09 0.32 7.39 16 21 C -0.16 -5.50 6.03 -18.93 -0.11 -5.61 16 22 C -0.20 -5.44 11.15 23.61 0.26 -5.18 16 23 C -0.03 -0.67 12.04 66.93 0.81 0.14 16 24 O -0.19 -5.65 10.55 1.06 0.01 -5.64 16 25 C 0.03 1.03 10.28 67.27 0.69 1.72 16 26 N -0.30 -9.59 12.50 -44.48 -0.56 -10.14 16 27 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.12 0.98 8.13 -2.39 -0.02 0.96 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.22 5.33 8.06 -2.91 -0.02 5.30 16 31 H 0.03 1.41 7.95 -2.39 -0.02 1.39 16 32 H 0.08 4.59 6.02 -2.38 -0.01 4.58 16 33 H 0.26 13.99 8.32 -92.70 -0.77 13.22 16 34 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 36 H 0.09 3.43 8.14 -2.38 -0.02 3.41 16 37 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 39 H 0.25 2.78 8.06 -2.91 -0.02 2.75 16 40 H 0.20 7.56 6.62 -2.91 -0.02 7.54 16 Total: -1.00 -71.36 353.70 7.34 -64.02 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 1.07 Total: 24.50 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 6.31 Total: -12.70 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -1.78 Total: -71.07 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -0.29 Total: -48.34 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -71.36 7.34 -64.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789437505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.588 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds