Wall clock time and date at job start Tue Mar 31 2020 11:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35834 * 126.07293 * 2 1 4 4 C 1.35625 * 107.57619 * 180.02562 * 3 2 1 5 5 O 1.36200 * 126.05607 * 179.97438 * 4 3 2 6 6 C 1.35594 * 117.99734 * 185.24367 * 5 4 3 7 7 C 1.38753 * 120.15965 * 266.86990 * 6 5 4 8 8 C 1.38033 * 120.09222 * 180.02562 * 7 6 5 9 9 C 1.38586 * 120.40178 * 359.95852 * 8 7 6 10 10 C 1.37763 * 120.32064 * 359.97438 * 9 8 7 11 11 C 1.39772 * 119.90412 * 0.27533 * 10 9 8 12 12 C 1.47375 * 120.19717 * 179.72101 * 11 10 9 13 13 O 1.21520 * 119.99884 * 179.97438 * 12 11 10 14 14 O 1.34753 * 120.00355 * 0.02562 * 12 11 10 15 15 C 1.45198 * 117.00287 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.47550 * 179.97438 * 15 14 12 17 17 C 1.50695 * 109.47651 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99733 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00337 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00180 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00161 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47415 * 89.99678 * 21 19 17 23 23 H 1.48495 * 109.47139 * 209.99937 * 21 19 17 24 24 H 1.48506 * 109.46711 * 329.99793 * 21 19 17 25 25 C 1.40144 * 107.88346 * 0.22334 * 4 3 2 26 26 N 1.30851 * 108.34792 * 359.61870 * 25 4 3 27 27 H 1.08998 * 109.47213 * 90.00131 * 1 2 3 28 28 H 1.08999 * 109.47493 * 209.99712 * 1 2 3 29 29 H 1.09002 * 109.46825 * 330.00335 * 1 2 3 30 30 H 1.07997 * 126.20860 * 0.05425 * 3 2 1 31 31 H 1.08003 * 119.95808 * 359.97438 * 7 6 5 32 32 H 1.07990 * 119.80133 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.83452 * 180.02562 * 9 8 7 34 34 H 1.07999 * 120.04388 * 180.02562 * 10 9 8 35 35 H 1.09010 * 109.46754 * 299.99701 * 15 14 12 36 36 H 1.08997 * 109.47232 * 59.99187 * 15 14 12 37 37 H 1.09010 * 109.46984 * 299.99727 * 16 15 14 38 38 H 1.08997 * 109.47380 * 59.99445 * 16 15 14 39 39 H 0.97004 * 120.00325 * 180.02562 * 20 19 17 40 40 H 1.08004 * 125.82797 * 179.77127 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2648 1.0979 0.0000 4 6 3.5510 0.6676 -0.0006 5 8 4.6606 1.4575 -0.0013 6 6 5.8705 0.8554 -0.1112 7 6 6.5860 0.5153 1.0280 8 6 7.8178 -0.0971 0.9144 9 6 8.3490 -0.3778 -0.3344 10 6 7.6524 -0.0487 -1.4765 11 6 6.4063 0.5765 -1.3768 12 6 5.6584 0.9370 -2.5944 13 8 4.5751 1.4800 -2.5036 14 8 6.1752 0.6634 -3.8085 15 6 5.3836 1.0471 -4.9637 16 6 6.1274 0.6597 -6.2432 17 6 5.3056 1.0573 -7.4421 18 1 4.3481 1.5380 -7.3051 19 6 5.7758 0.8075 -8.7139 20 7 5.0583 1.1542 -9.7602 21 14 7.4314 -0.0245 -8.9509 22 1 7.2431 -1.4967 -8.9997 23 1 8.0407 0.4391 -10.2233 24 1 8.3265 0.3229 -7.8180 25 6 3.5360 -0.7337 -0.0061 26 7 2.2897 -1.1323 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.9361 2.1266 0.0008 31 1 6.1790 0.7309 2.0049 32 1 8.3708 -0.3594 1.8041 33 1 9.3134 -0.8576 -0.4126 34 1 8.0704 -0.2699 -2.4474 35 1 4.4224 0.5339 -4.9321 36 1 5.2206 2.1248 -4.9507 37 1 7.0884 1.1732 -6.2745 38 1 6.2908 -0.4179 -6.2564 39 1 5.3890 0.9781 -10.6550 40 1 4.4048 -1.3752 -0.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801463531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:01 Heat of formation + Delta-G solvation = 1.296239 kcal Electronic energy + Delta-G solvation = -25595.838042 eV Core-core repulsion = 21765.027004 eV Total energy + Delta-G solvation = -3830.811038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55311 -40.43784 -39.17532 -37.64680 -36.00546 -33.31595 -33.12210 -31.77205 -30.89432 -30.57264 -29.30510 -26.67735 -25.62288 -24.01290 -23.16988 -21.46423 -21.34877 -20.64423 -20.43851 -18.60921 -17.79999 -16.95097 -16.48515 -16.31545 -15.99067 -15.83909 -15.51689 -15.29170 -14.97046 -14.51029 -14.27378 -14.17569 -13.54396 -13.43738 -13.12574 -12.97772 -12.79955 -12.59069 -12.47734 -12.36115 -11.96143 -11.48556 -11.37911 -11.26651 -10.86363 -10.68293 -10.52077 -9.95172 -9.87589 -9.68588 -9.54341 -9.34632 -9.30774 -9.04310 -8.62102 -7.99704 -6.12674 -4.13796 0.46135 0.91471 1.72458 2.29941 2.65883 2.73290 3.04189 3.19996 3.27935 3.35152 3.39350 3.66405 4.38705 4.48457 4.56797 4.66048 4.69606 4.79665 4.93921 4.98526 5.07498 5.14241 5.20894 5.21466 5.28658 5.40525 5.61165 5.64612 5.93093 5.97595 5.99223 6.03227 6.10829 6.18147 6.45476 6.47524 6.78547 6.82125 7.19581 7.22603 7.45192 7.59684 7.62788 8.16352 8.40146 8.88998 9.46843 10.99952 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.003636 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.802174 B = 7698.639360 C = 9477.535594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.371 5.371 3 C 0.036 3.964 4 C -0.011 4.011 5 O -0.233 6.233 6 C 0.150 3.850 7 C -0.141 4.141 8 C -0.078 4.078 9 C -0.133 4.133 10 C -0.051 4.051 11 C -0.131 4.131 12 C 0.495 3.505 13 O -0.487 6.487 14 O -0.359 6.359 15 C 0.086 3.914 16 C -0.009 4.009 17 C -0.527 4.527 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.881 3.119 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 C 0.003 3.997 26 N -0.273 5.273 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.182 0.818 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.023 0.977 39 H 0.266 0.734 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 -3.160 26.138 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.159 5.159 3 C -0.108 4.108 4 C -0.063 4.063 5 O -0.143 6.143 6 C 0.106 3.894 7 C -0.159 4.159 8 C -0.096 4.096 9 C -0.151 4.151 10 C -0.070 4.070 11 C -0.132 4.132 12 C 0.338 3.662 13 O -0.375 6.375 14 O -0.276 6.276 15 C 0.013 3.987 16 C -0.046 4.046 17 C -0.565 4.565 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.708 3.292 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.183 4.183 26 N -0.096 5.096 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.199 0.801 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.772 -3.746 25.919 26.200 hybrid contribution 1.319 0.323 -0.517 1.453 sum 0.547 -3.422 25.402 25.637 Atomic orbital electron populations 1.21844 0.73312 1.04353 1.03700 1.48194 1.06482 1.03004 1.58212 1.21446 0.88534 0.93641 1.07164 1.18489 0.86357 0.88898 1.12592 1.84130 1.09712 1.30912 1.89543 1.18655 0.85746 0.93962 0.91042 1.21347 0.96304 1.00208 0.98059 1.21278 0.94352 0.95820 0.98167 1.21257 1.00709 1.01161 0.91953 1.21556 0.91994 0.93078 1.00344 1.19777 0.97391 1.05012 0.91041 1.20802 0.84273 0.76876 0.84241 1.90865 1.20678 1.38293 1.87696 1.86515 1.51030 1.75156 1.14862 1.23369 0.94132 1.00033 0.81156 1.19622 0.97041 0.97402 0.90543 1.20838 1.06115 1.40827 0.88707 0.90684 1.24933 0.97397 0.94987 0.95676 1.69898 1.38086 1.47208 0.98348 0.86749 0.84487 0.80089 0.77878 1.20049 1.21159 1.18733 1.23965 0.96070 0.93859 1.04447 1.77245 1.00789 1.08648 1.22960 0.90496 0.89283 0.89337 0.80089 0.84358 0.84754 0.84667 0.83491 0.91823 0.91660 0.95350 0.95828 0.92438 0.80277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.80 11.48 59.85 0.69 1.49 16 2 N -0.37 -4.58 4.04 -67.85 -0.27 -4.86 16 3 C 0.04 0.47 11.56 -16.71 -0.19 0.27 16 4 C -0.01 -0.17 5.70 -39.80 -0.23 -0.39 16 5 O -0.23 -3.53 8.65 -25.50 -0.22 -3.75 16 6 C 0.15 2.00 4.78 -38.64 -0.18 1.81 16 7 C -0.14 -1.36 9.98 -39.47 -0.39 -1.76 16 8 C -0.08 -0.60 10.03 -39.53 -0.40 -1.00 16 9 C -0.13 -1.13 10.02 -39.63 -0.40 -1.53 16 10 C -0.05 -0.60 9.61 -39.18 -0.38 -0.97 16 11 C -0.13 -1.91 5.89 -104.85 -0.62 -2.52 16 12 C 0.49 9.20 7.89 34.45 0.27 9.47 16 13 O -0.49 -10.13 14.00 -26.60 -0.37 -10.51 16 14 O -0.36 -7.10 9.47 -40.63 -0.38 -7.48 16 15 C 0.09 1.90 5.41 37.15 0.20 2.10 16 16 C -0.01 -0.21 4.42 -27.89 -0.12 -0.34 16 17 C -0.53 -15.17 9.66 -34.45 -0.33 -15.50 16 18 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 21 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 25 C 0.00 0.04 11.15 -17.25 -0.19 -0.15 16 26 N -0.27 -3.98 12.57 30.69 0.39 -3.59 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.18 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.15 1.67 7.61 -52.49 -0.40 1.27 16 35 H 0.06 1.44 8.14 -51.92 -0.42 1.01 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.03 0.69 7.20 -51.92 -0.37 0.31 16 38 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.18 2.23 7.77 -52.48 -0.41 1.82 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -35.85 353.33 -6.77 -42.62 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.96 Total: -0.80 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.37 Total: -7.02 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.89 Total: -35.23 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.98 Total: -21.74 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.85 -6.77 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801463531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.921 kcal (2) G-P(sol) polarization free energy of solvation -35.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds