Wall clock time and date at job start Tue Mar 31 2020 10:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09011 * 109.47125 * 2 1 4 4 C 1.50699 * 109.47211 * 119.99486 * 2 1 3 5 5 H 1.08001 * 119.99840 * 120.00560 * 4 2 1 6 6 C 1.37875 * 120.00224 * 300.00127 * 4 2 1 7 7 N 1.31514 * 119.99878 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99992 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47325 * 89.99720 * 8 6 4 10 10 H 1.48499 * 109.46906 * 209.99863 * 8 6 4 11 11 H 1.48501 * 109.47020 * 329.99678 * 8 6 4 12 12 O 1.45196 * 109.47384 * 240.00141 * 2 1 3 13 13 C 1.34756 * 117.00410 * 89.99429 * 12 2 1 14 14 O 1.21507 * 119.99769 * 0.02562 * 13 12 2 15 15 C 1.47377 * 120.00180 * 180.02562 * 13 12 2 16 16 C 1.39776 * 120.19852 * 0.02562 * 15 13 12 17 17 C 1.37757 * 119.90520 * 179.97438 * 16 15 13 18 18 C 1.38583 * 120.31666 * 0.02562 * 17 16 15 19 19 C 1.38030 * 120.40896 * 359.97438 * 18 17 16 20 20 C 1.38756 * 120.08531 * 0.02562 * 19 18 17 21 21 O 1.35597 * 120.15358 * 179.97438 * 20 19 18 22 22 C 1.36191 * 118.00086 * 266.89436 * 21 20 19 23 23 C 1.40151 * 126.05974 * 4.94209 * 22 21 20 24 24 N 1.30857 * 108.34467 * 179.81170 * 23 22 21 25 25 N 1.40079 * 108.33334 * 0.44359 * 24 23 22 26 26 C 1.46494 * 126.06712 * 179.71484 * 25 24 23 27 27 C 1.35635 * 126.05851 * 185.24447 * 22 21 20 28 28 H 1.09004 * 109.47390 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47133 * 300.00235 * 1 2 3 30 30 H 1.09004 * 109.47073 * 60.00047 * 1 2 3 31 31 H 0.97001 * 120.00045 * 179.97438 * 7 6 4 32 32 H 1.07993 * 120.05064 * 359.95581 * 16 15 13 33 33 H 1.07994 * 119.84609 * 180.02562 * 17 16 15 34 34 H 1.08004 * 119.79746 * 179.71752 * 18 17 16 35 35 H 1.08000 * 119.95690 * 179.97438 * 19 18 17 36 36 H 1.07996 * 125.82960 * 359.97438 * 23 22 21 37 37 H 1.08997 * 109.47411 * 270.00064 * 26 25 24 38 38 H 1.09004 * 109.47361 * 29.99941 * 26 25 24 39 39 H 1.09001 * 109.47258 * 149.99685 * 26 25 24 40 40 H 1.07993 * 126.21357 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5565 8 14 0.6246 1.2792 2.6541 9 1 -0.8029 0.8728 2.6997 10 1 0.9758 1.9953 3.9067 11 1 0.8469 2.1766 1.4919 12 8 2.0140 -0.6844 -1.1855 13 6 2.2178 0.0669 -2.2854 14 8 1.9976 1.2615 -2.2545 15 6 2.7079 -0.5602 -3.5258 16 6 2.9622 -1.9340 -3.5662 17 6 3.4196 -2.5140 -4.7289 18 6 3.6300 -1.7416 -5.8602 19 6 3.3832 -0.3838 -5.8349 20 6 2.9221 0.2178 -4.6727 21 8 2.6797 1.5517 -4.6462 22 6 3.6795 2.3750 -4.2250 23 6 4.9865 1.9867 -3.9010 24 7 5.6562 3.0526 -3.5436 25 7 4.7980 4.1573 -3.6168 26 6 5.1468 5.5432 -3.2950 27 6 3.5851 3.7153 -4.0392 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9032 -0.5278 4.4375 32 1 2.8005 -2.5399 -2.6870 33 1 3.6154 -3.5756 -4.7591 34 1 3.9932 -2.2043 -6.7660 35 1 3.5500 0.2112 -6.7206 36 1 5.3755 0.9800 -3.9421 37 1 4.9503 5.7317 -2.2396 38 1 6.2038 5.7096 -3.5031 39 1 4.5461 6.2196 -3.9030 40 1 2.7054 4.3211 -4.1986 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802084347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:08 Heat of formation + Delta-G solvation = 12.725657 kcal Electronic energy + Delta-G solvation = -26362.226131 eV Core-core repulsion = 22531.910709 eV Total energy + Delta-G solvation = -3830.315421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40261 -40.23064 -38.94239 -37.48292 -35.74725 -33.20834 -33.00373 -31.56608 -30.73773 -30.39088 -29.15481 -26.55422 -25.29545 -24.43384 -23.02060 -21.92237 -21.22097 -20.66427 -19.84832 -18.47355 -17.66035 -16.64985 -16.47622 -16.04403 -15.87591 -15.49726 -15.28125 -15.11386 -14.80718 -14.51450 -14.29315 -13.96622 -13.30570 -13.11802 -12.89971 -12.78195 -12.69020 -12.42082 -12.28444 -12.27102 -11.95592 -11.68194 -11.47889 -11.20083 -10.89024 -10.72790 -10.22455 -9.92816 -9.74356 -9.56002 -9.41064 -9.13060 -9.11183 -8.87778 -8.68101 -7.85556 -6.22482 -4.24454 0.65688 1.08358 1.85217 2.42666 2.82372 2.95747 3.18459 3.30416 3.33044 3.36321 3.43423 3.87189 4.26840 4.59729 4.74075 4.82127 4.82906 4.98895 5.04458 5.08963 5.10295 5.26636 5.29401 5.32750 5.47729 5.54482 5.75144 5.82208 6.09276 6.14808 6.20256 6.26737 6.31585 6.34506 6.44586 6.61172 6.65119 6.94632 7.03783 7.37070 7.51781 7.58855 7.74401 8.24172 8.61276 8.84438 9.34875 10.89654 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010950 B = 0.005028 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.535426 B = 5567.366502 C = 7349.266982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.194 3.806 3 H 0.045 0.955 4 C -0.523 4.523 5 H 0.087 0.913 6 C 0.080 3.920 7 N -0.888 5.888 8 Si 0.878 3.122 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.263 1.263 12 O -0.338 6.338 13 C 0.491 3.509 14 O -0.495 6.495 15 C -0.127 4.127 16 C -0.051 4.051 17 C -0.133 4.133 18 C -0.081 4.081 19 C -0.142 4.142 20 C 0.146 3.854 21 O -0.233 6.233 22 C -0.008 4.008 23 C 0.005 3.995 24 N -0.273 5.273 25 N -0.372 5.372 26 C 0.110 3.890 27 C 0.033 3.967 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.269 0.731 32 H 0.149 0.851 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.181 0.819 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.873 5.011 -20.184 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.140 3.860 3 H 0.063 0.937 4 C -0.561 4.561 5 H 0.105 0.895 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.707 3.293 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.188 1.188 12 O -0.254 6.254 13 C 0.334 3.666 14 O -0.384 6.384 15 C -0.128 4.128 16 C -0.069 4.069 17 C -0.151 4.151 18 C -0.099 4.099 19 C -0.160 4.160 20 C 0.103 3.897 21 O -0.143 6.143 22 C -0.060 4.060 23 C -0.182 4.182 24 N -0.096 5.096 25 N -0.160 5.160 26 C -0.031 4.031 27 C -0.111 4.111 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.198 0.802 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.731 6.030 -19.542 20.991 hybrid contribution -1.502 0.394 0.198 1.565 sum 3.229 6.424 -19.344 20.637 Atomic orbital electron populations 1.22519 0.98476 1.01858 0.99811 1.20901 0.90421 0.94417 0.80259 0.93749 1.20773 1.33318 1.14800 0.87219 0.89473 1.24712 0.95650 0.96672 0.95249 1.69835 1.44790 1.39930 0.97972 0.86982 0.80815 0.83746 0.77716 1.19954 1.21700 1.18784 1.86551 1.76107 1.42331 1.20447 1.20818 0.75821 0.85463 0.84463 1.90814 1.47463 1.15689 1.84448 1.19862 1.05943 0.94920 0.92121 1.21590 0.93318 0.92951 0.99014 1.21245 1.00530 1.00675 0.92664 1.21242 0.97148 0.92921 0.98637 1.21312 1.00957 0.95819 0.97955 1.18661 0.96576 0.82491 0.91989 1.84117 1.35289 1.12874 1.82031 1.18490 0.87757 0.89936 1.09813 1.23974 0.92590 0.98872 1.02715 1.77238 1.17368 0.92460 1.22568 1.48161 1.07470 1.07466 1.52946 1.21815 1.03083 0.76066 1.02158 1.21403 0.90896 0.93806 1.04956 0.91764 0.92596 0.94366 0.92085 0.83341 0.84758 0.84908 0.84535 0.80236 0.90614 0.89332 0.89457 0.80231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 9.03 37.15 0.34 -3.63 16 2 C 0.19 5.02 2.16 -27.89 -0.06 4.96 16 3 H 0.04 1.23 6.22 -51.92 -0.32 0.91 16 4 C -0.52 -15.20 9.48 -34.44 -0.33 -15.52 16 5 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 6 C 0.08 2.33 5.45 -17.82 -0.10 2.24 16 7 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 8 Si 0.88 22.03 24.37 -169.99 -4.14 17.89 16 9 H -0.27 -6.54 6.87 56.52 0.39 -6.16 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.26 -6.56 6.53 56.52 0.37 -6.19 16 12 O -0.34 -7.96 9.11 -40.65 -0.37 -8.33 16 13 C 0.49 10.52 7.86 34.45 0.27 10.79 16 14 O -0.49 -11.60 13.46 -26.59 -0.36 -11.95 16 15 C -0.13 -2.14 5.89 -104.86 -0.62 -2.75 16 16 C -0.05 -0.69 9.61 -39.18 -0.38 -1.07 16 17 C -0.13 -1.35 10.02 -39.63 -0.40 -1.75 16 18 C -0.08 -0.75 10.03 -39.53 -0.40 -1.14 16 19 C -0.14 -1.59 9.98 -39.47 -0.39 -1.99 16 20 C 0.15 2.22 4.78 -38.64 -0.18 2.03 16 21 O -0.23 -3.92 8.66 -25.48 -0.22 -4.14 16 22 C -0.01 -0.13 5.68 -39.79 -0.23 -0.36 16 23 C 0.00 0.08 11.15 -17.25 -0.19 -0.11 16 24 N -0.27 -4.42 12.57 30.69 0.39 -4.03 16 25 N -0.37 -5.14 4.04 -67.85 -0.27 -5.41 16 26 C 0.11 0.94 11.48 59.84 0.69 1.63 16 27 C 0.03 0.48 11.56 -16.71 -0.19 0.28 16 28 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.06 1.32 3.27 -51.92 -0.17 1.15 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.15 2.06 7.61 -52.49 -0.40 1.66 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.18 2.58 7.76 -52.49 -0.41 2.18 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.18 2.06 8.06 -52.49 -0.42 1.63 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -35.83 344.99 -5.88 -41.72 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.71 Total: 1.62 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.17 Total: -6.40 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.89 Total: -35.60 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.95 Total: -24.42 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.83 -5.88 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802084347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.444 kcal (2) G-P(sol) polarization free energy of solvation -35.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds