Wall clock time and date at job start Tue Mar 31 2020 10:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09011 * 109.47125 * 2 1 4 4 C 1.50699 * 109.47211 * 119.99486 * 2 1 3 5 5 H 1.08001 * 119.99840 * 120.00560 * 4 2 1 6 6 C 1.37875 * 120.00224 * 300.00127 * 4 2 1 7 7 N 1.31514 * 119.99878 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99992 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47325 * 89.99720 * 8 6 4 10 10 H 1.48499 * 109.46906 * 209.99863 * 8 6 4 11 11 H 1.48501 * 109.47020 * 329.99678 * 8 6 4 12 12 O 1.45196 * 109.47384 * 240.00141 * 2 1 3 13 13 C 1.34756 * 117.00410 * 89.99429 * 12 2 1 14 14 O 1.21507 * 119.99769 * 0.02562 * 13 12 2 15 15 C 1.47377 * 120.00180 * 180.02562 * 13 12 2 16 16 C 1.39776 * 120.19852 * 0.02562 * 15 13 12 17 17 C 1.37757 * 119.90520 * 179.97438 * 16 15 13 18 18 C 1.38583 * 120.31666 * 0.02562 * 17 16 15 19 19 C 1.38030 * 120.40896 * 359.97438 * 18 17 16 20 20 C 1.38756 * 120.08531 * 0.02562 * 19 18 17 21 21 O 1.35597 * 120.15358 * 179.97438 * 20 19 18 22 22 C 1.36191 * 118.00086 * 266.89436 * 21 20 19 23 23 C 1.40151 * 126.05974 * 4.94209 * 22 21 20 24 24 N 1.30857 * 108.34467 * 179.81170 * 23 22 21 25 25 N 1.40079 * 108.33334 * 0.44359 * 24 23 22 26 26 C 1.46494 * 126.06712 * 179.71484 * 25 24 23 27 27 C 1.35635 * 126.05851 * 185.24447 * 22 21 20 28 28 H 1.09004 * 109.47390 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47133 * 300.00235 * 1 2 3 30 30 H 1.09004 * 109.47073 * 60.00047 * 1 2 3 31 31 H 0.97001 * 120.00045 * 179.97438 * 7 6 4 32 32 H 1.07993 * 120.05064 * 359.95581 * 16 15 13 33 33 H 1.07994 * 119.84609 * 180.02562 * 17 16 15 34 34 H 1.08004 * 119.79746 * 179.71752 * 18 17 16 35 35 H 1.08000 * 119.95690 * 179.97438 * 19 18 17 36 36 H 1.07996 * 125.82960 * 359.97438 * 23 22 21 37 37 H 1.08997 * 109.47411 * 270.00064 * 26 25 24 38 38 H 1.09004 * 109.47361 * 29.99941 * 26 25 24 39 39 H 1.09001 * 109.47258 * 149.99685 * 26 25 24 40 40 H 1.07993 * 126.21357 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5565 8 14 0.6246 1.2792 2.6541 9 1 -0.8029 0.8728 2.6997 10 1 0.9758 1.9953 3.9067 11 1 0.8469 2.1766 1.4919 12 8 2.0140 -0.6844 -1.1855 13 6 2.2178 0.0669 -2.2854 14 8 1.9976 1.2615 -2.2545 15 6 2.7079 -0.5602 -3.5258 16 6 2.9622 -1.9340 -3.5662 17 6 3.4196 -2.5140 -4.7289 18 6 3.6300 -1.7416 -5.8602 19 6 3.3832 -0.3838 -5.8349 20 6 2.9221 0.2178 -4.6727 21 8 2.6797 1.5517 -4.6462 22 6 3.6795 2.3750 -4.2250 23 6 4.9865 1.9867 -3.9010 24 7 5.6562 3.0526 -3.5436 25 7 4.7980 4.1573 -3.6168 26 6 5.1468 5.5432 -3.2950 27 6 3.5851 3.7153 -4.0392 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9032 -0.5278 4.4375 32 1 2.8005 -2.5399 -2.6870 33 1 3.6154 -3.5756 -4.7591 34 1 3.9932 -2.2043 -6.7660 35 1 3.5500 0.2112 -6.7206 36 1 5.3755 0.9800 -3.9421 37 1 4.9503 5.7317 -2.2396 38 1 6.2038 5.7096 -3.5031 39 1 4.5461 6.2196 -3.9030 40 1 2.7054 4.3211 -4.1986 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802084347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:07 Heat of formation + Delta-G solvation = -10.405395 kcal Electronic energy + Delta-G solvation = -26363.229168 eV Core-core repulsion = 22531.910709 eV Total energy + Delta-G solvation = -3831.318459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.52381 -41.57085 -40.38767 -38.51572 -37.55567 -35.32278 -33.97211 -33.04975 -32.06934 -31.76031 -30.20306 -27.47136 -27.40467 -25.79463 -24.04061 -23.50074 -22.27878 -21.99967 -21.36769 -19.67643 -19.23114 -18.54595 -17.99826 -17.26282 -17.19906 -16.86037 -16.63932 -16.34305 -16.17518 -15.73265 -15.39889 -15.16413 -14.98960 -14.56656 -14.34085 -14.19175 -13.95352 -13.68416 -13.56882 -13.48265 -13.28085 -13.19207 -12.91216 -12.78655 -12.27733 -12.20844 -11.84793 -11.75419 -11.71397 -11.34800 -11.21843 -10.87170 -10.49200 -10.13461 -9.85436 -8.97509 -8.48454 -6.57039 -0.45163 0.13699 0.73979 1.18715 1.26261 1.35962 1.48378 1.57433 1.68290 1.82586 2.15621 2.29119 2.78477 2.84163 3.64729 3.68797 3.78307 3.83456 4.06719 4.16529 4.18335 4.28950 4.32626 4.36128 4.40399 4.41863 4.49539 4.56937 4.66388 4.67594 4.69292 4.89527 5.13307 5.20511 5.22586 5.27761 5.29581 5.38029 5.58661 5.73916 5.97646 6.10240 6.45996 6.46557 6.63286 6.84409 7.07735 8.67524 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010950 B = 0.005028 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.535426 B = 5567.366502 C = 7349.266982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.197 3.803 3 H 0.023 0.977 4 C -0.539 4.539 5 H 0.048 0.952 6 C 0.033 3.967 7 N -0.927 5.927 8 Si 0.938 3.062 9 H -0.248 1.248 10 H -0.280 1.280 11 H -0.264 1.264 12 O -0.350 6.350 13 C 0.485 3.515 14 O -0.523 6.523 15 C -0.163 4.163 16 C -0.061 4.061 17 C -0.120 4.120 18 C -0.054 4.054 19 C -0.135 4.135 20 C 0.130 3.870 21 O -0.250 6.250 22 C -0.033 4.033 23 C -0.008 4.008 24 N -0.302 5.302 25 N -0.369 5.369 26 C 0.098 3.902 27 C 0.032 3.968 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.276 0.724 32 H 0.136 0.864 33 H 0.172 0.828 34 H 0.183 0.817 35 H 0.161 0.839 36 H 0.184 0.816 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 5.431 -22.836 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.143 3.857 3 H 0.041 0.959 4 C -0.576 4.576 5 H 0.067 0.933 6 C -0.167 4.167 7 N -0.565 5.565 8 Si 0.763 3.237 9 H -0.173 1.173 10 H -0.207 1.207 11 H -0.188 1.188 12 O -0.266 6.266 13 C 0.331 3.669 14 O -0.414 6.414 15 C -0.164 4.164 16 C -0.079 4.079 17 C -0.137 4.137 18 C -0.071 4.071 19 C -0.153 4.153 20 C 0.087 3.913 21 O -0.160 6.160 22 C -0.085 4.085 23 C -0.193 4.193 24 N -0.127 5.127 25 N -0.157 5.157 26 C -0.041 4.041 27 C -0.113 4.113 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.189 0.811 34 H 0.200 0.800 35 H 0.179 0.821 36 H 0.201 0.799 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.141 0.859 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.276 6.442 -22.205 23.513 hybrid contribution -1.226 0.197 0.916 1.543 sum 3.050 6.638 -21.289 22.508 Atomic orbital electron populations 1.22393 0.96219 1.02689 1.00570 1.20579 0.92045 0.92751 0.80312 0.95888 1.20914 1.33397 1.14036 0.89294 0.93344 1.25515 0.96846 0.99718 0.94604 1.69947 1.46076 1.41766 0.98736 0.86014 0.80150 0.79679 0.77822 1.17256 1.20679 1.18849 1.86540 1.76699 1.42669 1.20713 1.21703 0.74964 0.85359 0.84876 1.90769 1.49023 1.16777 1.84859 1.19777 1.09582 0.96431 0.90640 1.21636 0.94180 0.91699 1.00416 1.21651 0.98322 1.02509 0.91245 1.21816 0.93872 0.91727 0.99733 1.21640 0.99581 0.97035 0.97079 1.18995 0.97685 0.81927 0.92727 1.84071 1.36001 1.13786 1.82167 1.18810 0.87867 0.90729 1.11108 1.24084 0.92878 0.99208 1.03125 1.77153 1.18547 0.93364 1.23592 1.48628 1.06967 1.08463 1.51618 1.22255 1.04697 0.74099 1.03079 1.21951 0.91789 0.93788 1.03801 0.90928 0.92494 0.92778 0.91448 0.84577 0.81083 0.79988 0.82138 0.79862 0.90394 0.88147 0.85933 0.77657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.55 9.03 71.98 0.65 -6.90 16 2 C 0.20 10.57 2.16 29.85 0.06 10.63 16 3 H 0.02 1.33 6.22 -2.38 -0.01 1.32 16 4 C -0.54 -32.66 9.48 25.60 0.24 -32.42 16 5 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 6 C 0.03 1.97 5.45 84.65 0.46 2.43 16 7 N -0.93 -57.56 13.96 21.45 0.30 -57.26 16 8 Si 0.94 45.48 24.37 68.60 1.67 47.16 16 9 H -0.25 -10.99 6.87 99.48 0.68 -10.30 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.26 -12.77 6.53 99.48 0.65 -12.12 16 12 O -0.35 -17.28 9.11 -56.67 -0.52 -17.80 16 13 C 0.49 21.71 7.86 70.23 0.55 22.27 16 14 O -0.52 -25.52 13.46 26.81 0.36 -25.16 16 15 C -0.16 -5.59 5.89 -20.02 -0.12 -5.71 16 16 C -0.06 -1.66 9.61 22.53 0.22 -1.44 16 17 C -0.12 -2.03 10.02 22.24 0.22 -1.81 16 18 C -0.05 -0.74 10.03 22.30 0.22 -0.52 16 19 C -0.14 -2.64 9.98 22.34 0.22 -2.42 16 20 C 0.13 3.88 4.78 22.88 0.11 3.99 16 21 O -0.25 -8.47 8.66 -14.91 -0.13 -8.59 16 22 C -0.03 -1.09 5.68 22.13 0.13 -0.97 16 23 C -0.01 -0.26 11.15 85.30 0.95 0.69 16 24 N -0.30 -9.91 12.57 -56.83 -0.71 -10.62 16 25 N -0.37 -9.98 4.04 -368.58 -1.49 -11.47 16 26 C 0.10 1.52 11.48 127.77 1.47 2.99 16 27 C 0.03 0.90 11.56 83.47 0.96 1.87 16 28 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.06 2.62 3.27 -2.38 -0.01 2.61 16 30 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 32 H 0.14 3.93 7.61 -2.91 -0.02 3.90 16 33 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.18 5.49 7.76 -2.91 -0.02 5.47 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.21 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -82.91 344.99 6.83 -76.08 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.99 Total: 14.97 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 6.36 Total: -7.30 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -1.90 Total: -79.36 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.28 Total: -51.55 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.67 Total: 47.16 kcal Total: -82.91 6.83 -76.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802084347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.677 kcal (2) G-P(sol) polarization free energy of solvation -82.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds