Wall clock time and date at job start Tue Mar 31 2020 10:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47261 * 2 1 4 4 O 1.45199 * 109.46829 * 120.00032 * 2 1 3 5 5 C 1.34227 * 116.99941 * 269.99914 * 4 2 1 6 6 O 1.20819 * 120.00137 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99926 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47244 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47743 * 179.97438 * 8 7 5 10 10 H 1.08002 * 119.99205 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00463 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00027 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99911 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46924 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47057 * 119.99666 * 13 11 9 16 16 H 1.48500 * 109.46815 * 239.99749 * 13 11 9 17 17 C 1.50703 * 109.47089 * 239.99811 * 2 1 3 18 18 O 1.21397 * 120.00109 * 260.00099 * 17 2 1 19 19 C 1.41748 * 120.00032 * 80.00104 * 17 2 1 20 20 C 1.37840 * 126.94458 * 359.97438 * 19 17 2 21 21 N 1.35302 * 109.51098 * 180.02562 * 20 19 17 22 22 H 0.97001 * 124.62044 * 179.97438 * 21 20 19 23 23 C 1.37763 * 110.74821 * 359.97438 * 21 20 19 24 24 N 1.32714 * 132.74389 * 180.02562 * 23 21 20 25 25 C 1.31597 * 121.71684 * 179.97438 * 24 23 21 26 26 C 1.38571 * 121.53288 * 359.97438 * 25 24 23 27 27 C 1.38366 * 119.30028 * 0.02562 * 26 25 24 28 28 C 1.39294 * 118.06400 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47258 * 300.00231 * 1 2 3 30 30 H 1.09010 * 109.46913 * 60.00196 * 1 2 3 31 31 H 1.09005 * 109.47364 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47086 * 299.99839 * 7 5 4 33 33 H 1.09001 * 109.47419 * 59.99843 * 7 5 4 34 34 H 1.09001 * 109.47421 * 299.99848 * 8 7 5 35 35 H 1.09001 * 109.47059 * 59.99600 * 8 7 5 36 36 H 0.96999 * 120.00488 * 180.02562 * 12 11 9 37 37 H 1.07996 * 125.23904 * 0.02562 * 20 19 17 38 38 H 1.07997 * 119.23461 * 180.02562 * 25 24 23 39 39 H 1.07999 * 120.35020 * 179.97438 * 26 25 24 40 40 H 1.08000 * 120.96866 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2170 0.0640 2.2811 6 8 1.9982 1.2518 2.2503 7 6 2.7192 -0.5771 3.5492 8 6 2.8630 0.4889 4.6372 9 6 3.3646 -0.1521 5.9055 10 1 3.5606 -1.2139 5.9328 11 6 3.5721 0.6165 7.0312 12 7 3.3329 1.9092 6.9980 13 14 4.1944 -0.1782 8.6030 14 1 4.3847 -1.6339 8.3799 15 1 5.4894 0.4373 8.9897 16 1 3.2034 0.0304 9.6891 17 6 2.0323 -0.7105 -1.2305 18 8 2.4068 -1.8628 -1.1557 19 6 2.0676 -0.0332 -2.4752 20 6 1.6796 1.2661 -2.7227 21 7 1.8616 1.5503 -4.0329 22 1 1.6589 2.4048 -4.4448 23 6 2.3739 0.4605 -4.7021 24 7 2.7121 0.2591 -5.9695 25 6 3.1921 -0.8945 -6.3825 26 6 3.3693 -1.9588 -5.5129 27 6 3.0337 -1.8067 -4.1793 28 6 2.5277 -0.5761 -3.7671 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 2.0103 -1.3373 3.8773 33 1 3.6883 -1.0401 3.3632 34 1 3.5717 1.2494 4.3093 35 1 1.8937 0.9515 4.8230 36 1 3.4792 2.4501 7.7898 37 1 1.2904 1.9516 -1.9844 38 1 3.4548 -1.0143 -7.4231 39 1 3.7643 -2.8974 -5.8726 40 1 3.1611 -2.6182 -3.4781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:53 Heat of formation + Delta-G solvation = -59.656626 kcal Electronic energy + Delta-G solvation = -24901.871933 eV Core-core repulsion = 21068.417780 eV Total energy + Delta-G solvation = -3833.454152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.16198 -40.34203 -38.97673 -38.21972 -36.13508 -33.60200 -33.40350 -32.45999 -31.08194 -30.63282 -29.62359 -26.20376 -25.34947 -24.22569 -23.25452 -22.92671 -21.70252 -19.80053 -19.29288 -18.59683 -17.64384 -17.21089 -16.52187 -16.20501 -16.05045 -15.97704 -15.63285 -15.35225 -14.91980 -14.49466 -14.45132 -14.23175 -13.68242 -13.39396 -13.25992 -12.94355 -12.78162 -12.59558 -12.32435 -12.31363 -12.14817 -11.59807 -11.20396 -10.97687 -10.75775 -10.66386 -10.59306 -10.06833 -10.04806 -9.96146 -9.66687 -9.44363 -9.16045 -9.01340 -8.57866 -8.38255 -6.02063 -4.06467 0.32954 0.85661 1.34350 2.15737 2.70066 2.80261 2.93966 3.31117 3.38546 3.42704 3.51206 3.88775 4.06098 4.15720 4.40885 4.44689 4.54478 4.74407 4.81976 4.86357 4.94768 5.01097 5.17638 5.33711 5.38721 5.42653 5.59362 5.68083 5.80641 5.88146 5.94521 6.00035 6.13653 6.21870 6.39310 6.60855 6.64257 6.90120 7.47187 7.53542 7.66383 7.72691 7.97516 8.23023 8.38884 9.00794 9.57700 11.09020 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.002255 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.784138 B =12411.458097 C =12749.488756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.041 3.959 3 H 0.105 0.895 4 O -0.341 6.341 5 C 0.457 3.543 6 O -0.506 6.506 7 C -0.103 4.103 8 C 0.033 3.967 9 C -0.527 4.527 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.428 3.572 18 O -0.439 6.439 19 C -0.255 4.255 20 C 0.149 3.851 21 N -0.558 5.558 22 H 0.427 0.573 23 C 0.271 3.729 24 N -0.494 5.494 25 C 0.134 3.866 26 C -0.190 4.190 27 C -0.024 4.024 28 C -0.104 4.104 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.261 0.739 37 H 0.197 0.803 38 H 0.164 0.836 39 H 0.142 0.858 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 -3.006 -27.288 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 H 0.123 0.877 4 O -0.259 6.259 5 C 0.301 3.699 6 O -0.393 6.393 7 C -0.141 4.141 8 C -0.004 4.004 9 C -0.565 4.565 10 H 0.078 0.922 11 C -0.144 4.144 12 N -0.529 5.529 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.305 3.695 18 O -0.314 6.314 19 C -0.264 4.264 20 C 0.014 3.986 21 N -0.161 5.161 22 H 0.266 0.734 23 C 0.040 3.960 24 N -0.206 5.206 25 C -0.031 4.031 26 C -0.211 4.211 27 C -0.050 4.050 28 C -0.110 4.110 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.214 0.786 38 H 0.181 0.819 39 H 0.160 0.840 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.679 -2.269 -27.797 28.279 hybrid contribution 0.259 -0.239 1.211 1.262 sum -4.420 -2.508 -26.585 27.067 Atomic orbital electron populations 1.22098 0.92082 1.03992 1.03775 1.22880 0.96263 0.98312 0.84130 0.87693 1.86749 1.77330 1.42168 1.19621 1.24914 0.73543 0.86382 0.85043 1.90604 1.47986 1.16896 1.83806 1.21790 1.01927 1.02032 0.88350 1.19025 0.98540 0.92444 0.90362 1.21204 1.44851 0.94807 0.95650 0.92206 1.25019 0.95501 0.94825 0.99023 1.69996 1.48495 1.05028 1.29356 0.86486 0.78475 0.79555 0.83184 1.19612 1.20974 1.20981 1.19911 0.75142 0.87477 0.86975 1.90556 1.36075 1.17480 1.87241 1.19682 1.16697 0.95496 0.94538 1.22896 0.94987 0.96207 0.84499 1.41367 1.53749 1.13466 1.07541 0.73406 1.18365 1.00151 0.87399 0.90126 1.66489 1.14642 1.25516 1.14002 1.22491 0.93968 0.86619 1.00013 1.22029 1.04138 1.01093 0.93867 1.21178 0.92353 0.95671 0.95817 1.19494 1.03659 0.94961 0.92886 0.90331 0.90640 0.90933 0.88785 0.88802 0.95590 0.95565 0.92925 0.78596 0.81892 0.84023 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.53 37.16 0.35 -1.38 16 2 C 0.04 0.55 2.43 -27.88 -0.07 0.48 16 3 H 0.11 1.30 6.59 -51.93 -0.34 0.96 16 4 O -0.34 -5.91 9.50 -45.64 -0.43 -6.34 16 5 C 0.46 8.95 7.93 36.01 0.29 9.24 16 6 O -0.51 -10.89 15.20 -18.74 -0.28 -11.18 16 7 C -0.10 -2.14 5.75 -27.88 -0.16 -2.30 16 8 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 9 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 10 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 13 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 17 C 0.43 5.71 6.22 -32.97 -0.20 5.50 16 18 O -0.44 -7.22 16.33 -13.29 -0.22 -7.44 16 19 C -0.26 -2.77 6.11 -104.93 -0.64 -3.41 16 20 C 0.15 1.06 10.97 -16.17 -0.18 0.88 16 21 N -0.56 -3.86 5.95 -11.67 -0.07 -3.93 16 22 H 0.43 1.61 8.96 -40.82 -0.37 1.24 16 23 C 0.27 2.75 8.40 -155.45 -1.31 1.44 16 24 N -0.49 -4.96 10.39 -12.29 -0.13 -5.09 16 25 C 0.13 1.06 11.15 -17.53 -0.20 0.86 16 26 C -0.19 -1.48 10.11 -39.41 -0.40 -1.88 16 27 C -0.02 -0.25 9.91 -39.14 -0.39 -0.63 16 28 C -0.10 -1.18 6.25 -104.90 -0.66 -1.84 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.55 7.90 -51.92 -0.41 0.14 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 33 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.20 0.68 7.63 -52.49 -0.40 0.28 16 38 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.15 1.53 7.47 -52.49 -0.39 1.13 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -36.91 354.58 -8.99 -45.90 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.83 Total: -1.79 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -4.08 Total: -5.77 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.54 Total: -35.17 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.94 Total: -24.96 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.91 -8.99 -45.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.760 kcal (2) G-P(sol) polarization free energy of solvation -36.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds