Wall clock time and date at job start Tue Mar 31 2020 10:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47261 * 2 1 4 4 O 1.45199 * 109.46829 * 120.00032 * 2 1 3 5 5 C 1.34227 * 116.99941 * 269.99914 * 4 2 1 6 6 O 1.20819 * 120.00137 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99926 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47244 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47743 * 179.97438 * 8 7 5 10 10 H 1.08002 * 119.99205 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00463 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00027 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99911 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46924 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47057 * 119.99666 * 13 11 9 16 16 H 1.48500 * 109.46815 * 239.99749 * 13 11 9 17 17 C 1.50703 * 109.47089 * 239.99811 * 2 1 3 18 18 O 1.21397 * 120.00109 * 260.00099 * 17 2 1 19 19 C 1.41748 * 120.00032 * 80.00104 * 17 2 1 20 20 C 1.37840 * 126.94458 * 359.97438 * 19 17 2 21 21 N 1.35302 * 109.51098 * 180.02562 * 20 19 17 22 22 H 0.97001 * 124.62044 * 179.97438 * 21 20 19 23 23 C 1.37763 * 110.74821 * 359.97438 * 21 20 19 24 24 N 1.32714 * 132.74389 * 180.02562 * 23 21 20 25 25 C 1.31597 * 121.71684 * 179.97438 * 24 23 21 26 26 C 1.38571 * 121.53288 * 359.97438 * 25 24 23 27 27 C 1.38366 * 119.30028 * 0.02562 * 26 25 24 28 28 C 1.39294 * 118.06400 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47258 * 300.00231 * 1 2 3 30 30 H 1.09010 * 109.46913 * 60.00196 * 1 2 3 31 31 H 1.09005 * 109.47364 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47086 * 299.99839 * 7 5 4 33 33 H 1.09001 * 109.47419 * 59.99843 * 7 5 4 34 34 H 1.09001 * 109.47421 * 299.99848 * 8 7 5 35 35 H 1.09001 * 109.47059 * 59.99600 * 8 7 5 36 36 H 0.96999 * 120.00488 * 180.02562 * 12 11 9 37 37 H 1.07996 * 125.23904 * 0.02562 * 20 19 17 38 38 H 1.07997 * 119.23461 * 180.02562 * 25 24 23 39 39 H 1.07999 * 120.35020 * 179.97438 * 26 25 24 40 40 H 1.08000 * 120.96866 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2170 0.0640 2.2811 6 8 1.9982 1.2518 2.2503 7 6 2.7192 -0.5771 3.5492 8 6 2.8630 0.4889 4.6372 9 6 3.3646 -0.1521 5.9055 10 1 3.5606 -1.2139 5.9328 11 6 3.5721 0.6165 7.0312 12 7 3.3329 1.9092 6.9980 13 14 4.1944 -0.1782 8.6030 14 1 4.3847 -1.6339 8.3799 15 1 5.4894 0.4373 8.9897 16 1 3.2034 0.0304 9.6891 17 6 2.0323 -0.7105 -1.2305 18 8 2.4068 -1.8628 -1.1557 19 6 2.0676 -0.0332 -2.4752 20 6 1.6796 1.2661 -2.7227 21 7 1.8616 1.5503 -4.0329 22 1 1.6589 2.4048 -4.4448 23 6 2.3739 0.4605 -4.7021 24 7 2.7121 0.2591 -5.9695 25 6 3.1921 -0.8945 -6.3825 26 6 3.3693 -1.9588 -5.5129 27 6 3.0337 -1.8067 -4.1793 28 6 2.5277 -0.5761 -3.7671 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 2.0103 -1.3373 3.8773 33 1 3.6883 -1.0401 3.3632 34 1 3.5717 1.2494 4.3093 35 1 1.8937 0.9515 4.8230 36 1 3.4792 2.4501 7.7898 37 1 1.2904 1.9516 -1.9844 38 1 3.4548 -1.0143 -7.4231 39 1 3.7643 -2.8974 -5.8726 40 1 3.1611 -2.6182 -3.4781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:52 Heat of formation + Delta-G solvation = -82.059543 kcal Electronic energy + Delta-G solvation = -24902.843396 eV Core-core repulsion = 21068.417780 eV Total energy + Delta-G solvation = -3834.425616 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.85787 -41.71107 -40.09039 -38.91492 -37.57541 -35.64181 -34.18138 -33.57476 -32.89694 -31.35773 -30.36503 -28.09512 -26.35357 -24.90088 -24.67408 -23.58739 -23.15480 -21.37397 -20.13652 -19.43756 -19.10295 -18.40172 -17.83720 -17.38891 -17.27752 -16.94712 -16.48172 -16.45287 -16.31591 -15.81269 -15.57838 -15.37452 -14.77841 -14.43257 -14.28472 -14.19785 -13.95715 -13.77720 -13.41812 -13.34499 -13.22728 -13.01906 -12.86473 -12.66336 -12.48779 -12.01724 -11.89442 -11.73112 -11.50281 -11.46352 -11.26398 -10.89813 -10.57726 -10.39060 -9.66766 -9.29395 -8.19831 -6.32767 -0.38371 0.16334 0.56891 1.21120 1.43188 1.44280 1.51703 1.57861 1.60633 1.99957 2.43211 2.82189 2.93052 3.14043 3.42111 3.53891 3.74102 3.78345 3.92116 3.93606 3.96958 4.08910 4.29683 4.41203 4.43557 4.44260 4.57584 4.66210 4.71511 4.79169 4.93504 5.07921 5.13591 5.21221 5.29289 5.36286 5.48176 5.56834 5.74486 5.81366 6.12615 6.14622 6.52163 6.78036 6.86310 6.87696 7.37076 8.92830 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.002255 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.784138 B =12411.458097 C =12749.488756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.031 3.969 3 H 0.118 0.882 4 O -0.347 6.347 5 C 0.467 3.533 6 O -0.531 6.531 7 C -0.098 4.098 8 C 0.041 3.959 9 C -0.544 4.544 10 H 0.074 0.926 11 C -0.002 4.002 12 N -0.933 5.933 13 Si 0.972 3.028 14 H -0.257 1.257 15 H -0.280 1.280 16 H -0.279 1.279 17 C 0.435 3.565 18 O -0.488 6.488 19 C -0.300 4.300 20 C 0.191 3.809 21 N -0.541 5.541 22 H 0.444 0.556 23 C 0.253 3.747 24 N -0.507 5.507 25 C 0.130 3.870 26 C -0.177 4.177 27 C -0.053 4.053 28 C -0.128 4.128 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.109 0.891 34 H -0.007 1.007 35 H -0.005 1.005 36 H 0.264 0.736 37 H 0.239 0.761 38 H 0.199 0.801 39 H 0.171 0.829 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 -3.134 -28.655 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.024 4.024 3 H 0.136 0.864 4 O -0.264 6.264 5 C 0.312 3.688 6 O -0.420 6.420 7 C -0.135 4.135 8 C 0.004 3.996 9 C -0.582 4.582 10 H 0.092 0.908 11 C -0.200 4.200 12 N -0.573 5.573 13 Si 0.796 3.204 14 H -0.180 1.180 15 H -0.206 1.206 16 H -0.205 1.205 17 C 0.316 3.684 18 O -0.366 6.366 19 C -0.308 4.308 20 C 0.054 3.946 21 N -0.145 5.145 22 H 0.287 0.713 23 C 0.022 3.978 24 N -0.220 5.220 25 C -0.035 4.035 26 C -0.198 4.198 27 C -0.080 4.080 28 C -0.133 4.133 29 H 0.087 0.913 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.011 0.989 35 H 0.014 0.986 36 H 0.073 0.927 37 H 0.255 0.745 38 H 0.216 0.784 39 H 0.189 0.811 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.874 -2.395 -29.219 29.719 hybrid contribution 0.298 -0.153 1.444 1.482 sum -4.576 -2.549 -27.775 28.265 Atomic orbital electron populations 1.22126 0.89864 1.04171 1.05283 1.23349 0.98107 0.98536 0.82446 0.86438 1.86689 1.77162 1.42334 1.20229 1.24448 0.73077 0.85807 0.85433 1.90588 1.49219 1.17825 1.84386 1.21534 1.03573 1.00602 0.87808 1.18784 0.95746 0.93024 0.92043 1.21666 1.44553 0.95601 0.96387 0.90824 1.26050 0.95606 0.95322 1.03061 1.70143 1.49756 1.06795 1.30622 0.85293 0.77743 0.79141 0.78207 1.18024 1.20558 1.20473 1.20060 0.73871 0.86866 0.87611 1.90538 1.38969 1.19307 1.87808 1.19514 1.20448 0.97318 0.93545 1.23473 0.91243 0.95042 0.84874 1.41428 1.52249 1.13531 1.07314 0.71332 1.18568 1.00999 0.88075 0.90194 1.66587 1.15047 1.26515 1.13855 1.23144 0.92898 0.85890 1.01566 1.22368 1.02413 1.02312 0.92676 1.21304 0.94116 0.95596 0.97001 1.19788 1.04195 0.95775 0.93582 0.91274 0.86563 0.91477 0.86858 0.87266 0.98885 0.98640 0.92708 0.74512 0.78396 0.81147 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.53 71.98 0.69 -2.46 16 2 C 0.03 0.82 2.43 29.85 0.07 0.89 16 3 H 0.12 2.76 6.59 -2.39 -0.02 2.75 16 4 O -0.35 -12.06 9.50 -45.27 -0.43 -12.49 16 5 C 0.47 18.46 7.93 71.24 0.56 19.02 16 6 O -0.53 -23.19 15.20 21.98 0.33 -22.86 16 7 C -0.10 -4.07 5.75 29.85 0.17 -3.90 16 8 C 0.04 2.23 4.26 29.85 0.13 2.36 16 9 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 10 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 11 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 12 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 13 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 14 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 C 0.43 11.68 6.22 26.55 0.17 11.84 16 18 O -0.49 -16.81 16.33 14.53 0.24 -16.57 16 19 C -0.30 -6.29 6.11 -20.06 -0.12 -6.42 16 20 C 0.19 2.19 10.97 84.06 0.92 3.11 16 21 N -0.54 -6.10 5.95 -190.84 -1.14 -7.24 16 22 H 0.44 1.95 8.96 -92.71 -0.83 1.12 16 23 C 0.25 4.78 8.40 133.71 1.12 5.90 16 24 N -0.51 -9.33 10.39 -192.79 -2.00 -11.33 16 25 C 0.13 1.78 11.15 84.81 0.95 2.73 16 26 C -0.18 -2.55 10.11 22.38 0.23 -2.33 16 27 C -0.05 -1.14 9.91 22.55 0.22 -0.91 16 28 C -0.13 -2.88 6.25 -20.05 -0.13 -3.00 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.12 1.33 7.90 -2.38 -0.02 1.31 16 31 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.11 4.26 8.14 -2.38 -0.02 4.24 16 33 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 34 H -0.01 -0.44 8.10 -2.39 -0.02 -0.46 16 35 H 0.00 -0.29 8.10 -2.39 -0.02 -0.31 16 36 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.24 0.59 7.63 -2.91 -0.02 0.57 16 38 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.13 3.04 7.47 -2.91 -0.02 3.02 16 Total: -1.00 -83.76 354.58 5.24 -78.51 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.25 Total: 6.49 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 5.67 Total: -3.24 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -2.85 Total: -75.83 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: 0.14 Total: -51.93 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -83.76 5.24 -78.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.545 kcal (2) G-P(sol) polarization free energy of solvation -83.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds