Wall clock time and date at job start Tue Mar 31 2020 10:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46995 * 2 1 4 4 O 1.45211 * 109.47145 * 119.99730 * 2 1 3 5 5 C 1.34223 * 116.99670 * 270.00070 * 4 2 1 6 6 O 1.20825 * 120.00860 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99823 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47163 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.46791 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00066 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99932 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00173 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00227 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46999 * 59.99886 * 13 11 9 15 15 H 1.48500 * 109.47562 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47064 * 299.99964 * 13 11 9 17 17 C 1.50698 * 109.47194 * 239.99506 * 2 1 3 18 18 N 1.30038 * 126.18965 * 285.02514 * 17 2 1 19 19 O 1.21289 * 110.48068 * 179.97438 * 18 17 2 20 20 C 1.34187 * 109.69580 * 0.02562 * 19 18 17 21 21 C 1.47821 * 126.67244 * 179.97438 * 20 19 18 22 22 C 1.39586 * 120.14184 * 180.02562 * 21 20 19 23 23 C 1.37956 * 119.84871 * 180.02562 * 22 21 20 24 24 C 1.38365 * 120.14522 * 359.97438 * 23 22 21 25 25 C 1.38349 * 120.29321 * 0.02562 * 24 23 22 26 26 C 1.37953 * 120.14975 * 0.02562 * 25 24 23 27 27 N 1.32123 * 106.65516 * 0.22785 * 20 19 18 28 28 H 1.08997 * 109.47096 * 59.99682 * 1 2 3 29 29 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47028 * 300.00421 * 1 2 3 31 31 H 1.09000 * 109.47006 * 300.00126 * 7 5 4 32 32 H 1.09000 * 109.46778 * 60.00004 * 7 5 4 33 33 H 1.08997 * 109.46892 * 299.99844 * 8 7 5 34 34 H 1.09000 * 109.47168 * 60.00368 * 8 7 5 35 35 H 0.96990 * 120.00619 * 180.02562 * 12 11 9 36 36 H 1.07993 * 120.07630 * 0.02562 * 22 21 20 37 37 H 1.07998 * 119.92711 * 180.25412 * 23 22 21 38 38 H 1.08003 * 119.85108 * 180.02562 * 24 23 22 39 39 H 1.08004 * 119.92828 * 179.97438 * 25 24 23 40 40 H 1.08005 * 120.07863 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1857 5 6 2.2171 0.0641 2.2811 6 8 1.9973 1.2518 2.2507 7 6 2.7182 -0.5771 3.5496 8 6 2.8635 0.4893 4.6371 9 6 3.3652 -0.1518 5.9054 10 1 3.5613 -1.2135 5.9328 11 6 3.5740 0.6170 7.0306 12 7 3.3348 1.9098 6.9974 13 14 4.1952 -0.1777 8.6028 14 1 5.5152 -0.8095 8.3500 15 1 4.3364 0.8572 9.6584 16 1 3.2285 -1.2126 9.0497 17 6 2.0323 -0.7105 -1.2304 18 7 2.0318 -1.9956 -1.4289 19 8 2.5008 -2.2572 -2.5164 20 6 2.8592 -1.1238 -3.1389 21 6 3.4691 -1.0082 -4.4804 22 6 3.7900 0.2475 -4.9987 23 6 4.3585 0.3484 -6.2516 24 6 4.6112 -0.7917 -6.9939 25 6 4.2955 -2.0392 -6.4860 26 6 3.7257 -2.1541 -5.2349 27 7 2.5661 -0.1315 -2.3172 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.0087 -1.3367 3.8775 32 1 3.6871 -1.0407 3.3641 33 1 3.5733 1.2486 4.3089 34 1 1.8948 0.9533 4.8227 35 1 3.4820 2.4508 7.7889 36 1 3.5936 1.1381 -4.4202 37 1 4.6110 1.3190 -6.6522 38 1 5.0568 -0.7072 -7.9740 39 1 4.4949 -2.9252 -7.0706 40 1 3.4794 -3.1286 -4.8397 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:17 Heat of formation + Delta-G solvation = -20.127480 kcal Electronic energy + Delta-G solvation = -24489.728311 eV Core-core repulsion = 20657.988271 eV Total energy + Delta-G solvation = -3831.740040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.85786 -41.79197 -40.10032 -38.40544 -37.03897 -35.69408 -34.80894 -33.32844 -32.53918 -31.94945 -31.20973 -28.17648 -26.55580 -25.79642 -24.69926 -23.72252 -23.19122 -22.09416 -21.34815 -19.48499 -19.32356 -19.21365 -18.31011 -17.73977 -17.58452 -17.35641 -16.71230 -16.49667 -15.89021 -15.56274 -15.37304 -14.89057 -14.56760 -14.40654 -14.29728 -14.21520 -14.11485 -13.82987 -13.46020 -13.28662 -12.98740 -12.82820 -12.70288 -12.59430 -12.56060 -12.24586 -12.14687 -12.04160 -12.02534 -11.80716 -11.65407 -11.51252 -11.32616 -10.58771 -9.97590 -9.76642 -8.21685 -6.35741 -0.68217 0.33876 0.40214 0.99928 1.08922 1.39094 1.43831 1.46327 1.50144 1.54421 2.30362 2.42511 2.72401 2.78612 3.11855 3.47608 3.57656 3.74471 3.89078 3.97744 3.99100 4.12752 4.30193 4.32752 4.37446 4.43562 4.45530 4.48951 4.53579 4.67202 4.82742 4.85405 4.89950 5.07342 5.18318 5.35228 5.43501 5.43768 5.51157 5.51530 5.77617 5.90814 6.10059 6.61596 6.81566 6.86734 7.34323 8.90658 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.002096 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.021570 B =13357.328572 C =13564.406730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.171 3.829 3 H 0.106 0.894 4 O -0.350 6.350 5 C 0.469 3.531 6 O -0.531 6.531 7 C -0.093 4.093 8 C 0.040 3.960 9 C -0.547 4.547 10 H 0.076 0.924 11 C -0.003 4.003 12 N -0.934 5.934 13 Si 0.975 3.025 14 H -0.264 1.264 15 H -0.286 1.286 16 H -0.263 1.263 17 C 0.165 3.835 18 N -0.370 5.370 19 O 0.097 5.903 20 C 0.236 3.764 21 C -0.059 4.059 22 C -0.075 4.075 23 C -0.126 4.126 24 C -0.082 4.082 25 C -0.121 4.121 26 C -0.079 4.079 27 N -0.486 5.486 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.113 0.887 33 H -0.009 1.009 34 H -0.005 1.005 35 H 0.265 0.735 36 H 0.128 0.872 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -9.267 -32.617 33.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.114 3.886 3 H 0.124 0.876 4 O -0.267 6.267 5 C 0.314 3.686 6 O -0.419 6.419 7 C -0.130 4.130 8 C 0.003 3.997 9 C -0.584 4.584 10 H 0.094 0.906 11 C -0.202 4.202 12 N -0.574 5.574 13 Si 0.798 3.202 14 H -0.188 1.188 15 H -0.212 1.212 16 H -0.187 1.187 17 C -0.107 4.107 18 N -0.074 5.074 19 O 0.033 5.967 20 C 0.020 3.980 21 C -0.061 4.061 22 C -0.095 4.095 23 C -0.143 4.143 24 C -0.100 4.100 25 C -0.139 4.139 26 C -0.099 4.099 27 N -0.220 5.220 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.009 0.991 34 H 0.013 0.987 35 H 0.073 0.927 36 H 0.146 0.854 37 H 0.172 0.828 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.033 -8.875 -31.734 32.951 hybrid contribution 0.159 0.378 1.054 1.130 sum 0.192 -8.497 -30.680 31.836 Atomic orbital electron populations 1.22143 0.89807 1.04408 1.04835 1.20628 0.96368 0.94952 0.76635 0.87624 1.86633 1.77497 1.42525 1.20057 1.24633 0.72976 0.85783 0.85182 1.90633 1.48945 1.18084 1.84224 1.21571 1.03739 1.00630 0.87056 1.18801 0.95751 0.93027 0.92152 1.21591 1.44893 0.95677 0.96281 0.90552 1.26096 0.95540 0.95308 1.03206 1.70142 1.49525 1.06879 1.30815 0.85355 0.79304 0.77977 0.77514 1.18844 1.21178 1.18715 1.25183 1.01020 0.87436 0.97105 1.74653 1.16568 1.17524 0.98680 1.85387 1.56091 1.34398 1.20842 1.26963 0.94969 0.79583 0.96486 1.17433 1.05580 0.96774 0.86349 1.21366 0.95987 0.95672 0.96500 1.21459 0.98695 1.01004 0.93181 1.21906 0.95509 0.91844 1.00746 1.21505 0.98086 0.99570 0.94693 1.21546 0.96242 0.97397 0.94739 1.72037 1.17713 1.30122 1.02095 0.88335 0.90413 0.90550 0.86302 0.86901 0.99074 0.98705 0.92676 0.85360 0.82760 0.82095 0.81968 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.53 71.98 0.69 -3.33 16 2 C 0.17 5.47 3.12 29.85 0.09 5.56 16 3 H 0.11 3.60 7.16 -2.39 -0.02 3.58 16 4 O -0.35 -12.73 9.86 -51.34 -0.51 -13.24 16 5 C 0.47 19.41 7.93 71.24 0.56 19.97 16 6 O -0.53 -25.11 15.20 21.97 0.33 -24.78 16 7 C -0.09 -3.89 5.75 29.85 0.17 -3.72 16 8 C 0.04 2.19 4.26 29.85 0.13 2.32 16 9 C -0.55 -30.94 9.11 25.60 0.23 -30.71 16 10 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 11 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 12 N -0.93 -58.39 13.29 21.45 0.28 -58.11 16 13 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 14 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 15 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 17 C 0.17 5.08 7.09 138.52 0.98 6.07 16 18 N -0.37 -11.10 12.15 -58.65 -0.71 -11.82 16 19 O 0.10 2.43 11.13 69.78 0.78 3.21 16 20 C 0.24 5.55 8.01 87.31 0.70 6.25 16 21 C -0.06 -0.99 5.87 -20.09 -0.12 -1.11 16 22 C -0.08 -1.11 9.71 22.53 0.22 -0.89 16 23 C -0.13 -1.10 10.03 22.23 0.22 -0.87 16 24 C -0.08 -0.45 10.04 22.33 0.22 -0.23 16 25 C -0.12 -0.76 10.03 22.23 0.22 -0.54 16 26 C -0.08 -0.88 9.73 22.53 0.22 -0.67 16 27 N -0.49 -13.83 11.26 -302.76 -3.41 -17.24 16 28 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.12 4.43 8.14 -2.39 -0.02 4.41 16 32 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16 33 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 34 H -0.01 -0.33 8.10 -2.39 -0.02 -0.35 16 35 H 0.26 15.51 8.31 -92.72 -0.77 14.74 16 36 H 0.13 2.11 7.88 -2.91 -0.02 2.08 16 37 H 0.15 0.66 8.06 -2.91 -0.02 0.63 16 38 H 0.16 -0.08 8.06 -2.91 -0.02 -0.10 16 39 H 0.16 0.10 8.06 -2.91 -0.02 0.07 16 40 H 0.15 1.25 7.95 -2.91 -0.02 1.22 16 Total: -1.00 -75.59 359.55 4.86 -70.72 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 1.06 Total: 6.68 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 5.01 Total: -1.63 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -3.84 Total: -87.16 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: 0.60 Total: -34.80 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -75.59 4.86 -70.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.596 kcal (2) G-P(sol) polarization free energy of solvation -75.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds