Wall clock time and date at job start Tue Mar 31 2020 11:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35972 * 117.00286 * 2 1 4 4 C 1.38719 * 119.98698 * 179.97438 * 3 2 1 5 5 C 1.38088 * 120.01786 * 180.02562 * 4 3 2 6 6 C 1.38852 * 119.97830 * 0.25497 * 5 4 3 7 7 N 1.40116 * 120.00918 * 179.72190 * 6 5 4 8 8 C 1.34774 * 120.00282 * 33.29637 * 7 6 5 9 9 O 1.21298 * 119.99547 * 5.28090 * 8 7 6 10 10 C 1.50700 * 119.99968 * 185.27556 * 8 7 6 11 11 H 1.08998 * 109.47139 * 300.00330 * 10 8 7 12 12 C 1.47199 * 109.47016 * 60.00283 * 10 8 7 13 13 N 8.72442 * 124.98238 * 16.08306 * 2 1 3 14 14 C 1.50704 * 109.46941 * 180.02562 * 10 8 7 15 15 O 1.20759 * 119.99712 * 335.00010 * 14 10 8 16 16 C 1.50692 * 119.99924 * 155.00067 * 14 10 8 17 17 C 1.52998 * 109.47429 * 180.02562 * 16 14 10 18 18 C 1.50701 * 109.47565 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99488 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99916 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00333 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99950 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47267 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.47266 * 119.99829 * 22 20 18 25 25 H 1.48495 * 109.47684 * 239.99909 * 22 20 18 26 26 C 1.38847 * 119.97349 * 359.44922 * 6 5 4 27 27 C 1.38086 * 119.98147 * 0.57079 * 26 6 5 28 28 H 1.09000 * 109.46738 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46775 * 299.99999 * 1 2 3 30 30 H 1.09004 * 109.46851 * 59.99787 * 1 2 3 31 31 H 1.08002 * 119.99571 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.01360 * 179.97438 * 5 4 3 33 33 H 0.96998 * 119.99826 * 213.30032 * 7 6 5 34 34 H 1.08998 * 109.47125 * 299.99938 * 16 14 10 35 35 H 1.08999 * 109.47180 * 60.00084 * 16 14 10 36 36 H 1.09011 * 109.47121 * 300.00302 * 17 16 14 37 37 H 1.09007 * 109.47212 * 59.99671 * 17 16 14 38 38 H 0.97006 * 120.00120 * 180.02562 * 21 20 18 39 39 H 1.07999 * 120.00604 * 180.27895 * 26 6 5 40 40 H 1.08000 * 119.99132 * 179.67861 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4317 1.2837 0.0005 5 6 4.0593 2.5137 0.0011 6 6 3.3033 3.6784 0.0064 7 7 3.9395 4.9268 0.0129 8 6 5.1150 5.0874 -0.6265 9 8 5.5750 4.1800 -1.2870 10 6 5.8577 6.3944 -0.5209 11 1 5.2341 7.1992 -0.9101 12 6 6.1808 6.6626 0.8899 13 7 6.4309 6.8684 1.9803 14 6 7.1317 6.3144 -1.3221 15 8 7.6442 5.2420 -1.5356 16 6 7.7659 7.5725 -1.8566 17 6 9.0377 7.2146 -2.6281 18 6 9.6723 8.4729 -3.1621 19 1 9.2140 9.4319 -2.9707 20 6 10.8378 8.3996 -3.8950 21 7 11.3961 7.2318 -4.1276 22 14 11.6240 9.9592 -4.5575 23 1 10.8062 11.1333 -4.1600 24 1 12.9934 10.0987 -3.9999 25 1 11.6980 9.8856 -6.0388 26 6 1.9168 3.6054 -0.0003 27 6 1.2905 2.3747 -0.0004 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.0196 0.3777 0.0005 32 1 5.1378 2.5699 0.0019 33 1 3.5339 5.6754 0.4776 34 1 7.0666 8.0768 -2.5235 35 1 8.0175 8.2333 -1.0270 36 1 9.7372 6.7100 -1.9615 37 1 8.7856 6.5540 -3.4577 38 1 12.2164 7.1803 -4.6429 39 1 1.3283 4.5110 -0.0007 40 1 0.2120 2.3178 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813059598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:47 Heat of formation + Delta-G solvation = -48.562388 kcal Electronic energy + Delta-G solvation = -24610.789742 eV Core-core repulsion = 20777.816671 eV Total energy + Delta-G solvation = -3832.973070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.18951 -40.17824 -38.89524 -37.42098 -36.73892 -34.67329 -33.57396 -32.14577 -31.40589 -30.89636 -29.17498 -27.47030 -25.89050 -23.29712 -23.08598 -21.91802 -21.02071 -19.76776 -18.84368 -18.41528 -17.68086 -17.19828 -16.61015 -16.28088 -16.03143 -15.49327 -15.17182 -14.89377 -14.53813 -14.48199 -14.32555 -14.02566 -13.81991 -13.53354 -13.20460 -13.09605 -13.05920 -12.95290 -12.46621 -12.29981 -12.22887 -12.12631 -11.70888 -11.21204 -11.19524 -10.98200 -10.62933 -10.37198 -10.12055 -10.06081 -9.81171 -9.28034 -9.21925 -9.00659 -8.37556 -8.01408 -6.00686 -4.05573 0.99895 1.06098 1.92279 2.03327 2.36593 2.57011 2.74161 2.99263 3.30598 3.38069 3.40780 3.49302 3.64950 4.06140 4.20411 4.44703 4.45953 4.57026 4.72503 4.73305 4.77796 4.97106 5.09226 5.12989 5.27575 5.34741 5.58639 5.61653 5.69973 5.99538 6.01505 6.07009 6.12261 6.18110 6.55437 6.80248 6.97782 7.08311 7.11591 7.64904 7.71895 7.74319 7.84140 7.98512 8.34584 9.02058 9.58750 11.10187 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.026435 B = 0.002285 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.948495 B =12251.296329 C =12808.872817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.111 3.889 4 C -0.129 4.129 5 C -0.079 4.079 6 C 0.113 3.887 7 N -0.672 5.672 8 C 0.524 3.476 9 O -0.464 6.464 10 C -0.065 4.065 11 H 0.166 0.834 12 C 0.214 3.786 13 N -0.390 5.390 14 C 0.359 3.641 15 O -0.386 6.386 16 C -0.152 4.152 17 C 0.029 3.971 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.058 3.942 21 N -0.888 5.888 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.103 4.103 27 C -0.190 4.190 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.411 0.589 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.023 0.977 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.130 0.870 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.735 -7.602 9.713 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.066 3.934 4 C -0.148 4.148 5 C -0.099 4.099 6 C 0.020 3.980 7 N -0.319 5.319 8 C 0.306 3.694 9 O -0.332 6.332 10 C -0.091 4.091 11 H 0.183 0.817 12 C -0.105 4.105 13 N -0.066 5.066 14 C 0.226 3.774 15 O -0.252 6.252 16 C -0.190 4.190 17 C -0.008 4.008 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.527 5.527 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.124 4.124 27 C -0.209 4.209 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.162 0.838 33 H 0.247 0.753 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.423 -8.824 10.644 28.065 hybrid contribution -0.242 1.474 -0.562 1.596 sum -24.665 -7.349 10.083 27.641 Atomic orbital electron populations 1.23049 0.78510 1.03932 1.01292 1.86097 1.21269 1.26874 1.88910 1.19028 0.92321 0.84190 0.97877 1.20353 0.91252 0.98456 1.04749 1.21065 1.01196 0.90066 0.97557 1.17592 0.91256 0.84950 1.04246 1.43461 1.22621 1.11626 1.54172 1.19796 0.80985 0.88698 0.79883 1.90908 1.65114 1.40570 1.36649 1.19818 1.02342 0.99641 0.87268 0.81650 1.27670 0.94966 0.94569 0.93272 1.81334 1.06625 1.07268 1.11384 1.24457 0.82434 0.93100 0.77405 1.90518 1.57360 1.31417 1.45887 1.22262 1.01444 0.93703 1.01561 1.18995 0.89479 0.97131 0.95219 1.21207 1.08585 0.92990 1.33821 0.92371 1.25033 0.97131 0.96028 0.96224 1.70000 1.19618 1.23449 1.39628 0.86527 0.79279 0.83407 0.78698 1.19709 1.21033 1.20982 1.20645 0.92249 0.97922 1.01572 1.20991 0.99947 0.91648 1.08348 0.88289 0.92704 0.92633 0.84648 0.83797 0.75330 0.88875 0.89330 0.95847 0.95530 0.92914 0.85227 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.02 10.50 -19.65 -0.21 -3.23 16 3 C 0.11 1.13 6.69 -39.23 -0.26 0.87 16 4 C -0.13 -1.44 9.98 -39.46 -0.39 -1.84 16 5 C -0.08 -0.96 8.65 -39.41 -0.34 -1.30 16 6 C 0.11 1.18 6.28 -83.62 -0.53 0.66 16 7 N -0.67 -6.21 5.22 -9.82 -0.05 -6.26 16 8 C 0.52 6.51 6.82 -10.99 -0.07 6.44 16 9 O -0.46 -7.87 12.20 -18.22 -0.22 -8.10 16 10 C -0.06 -0.72 2.84 -95.71 -0.27 -0.99 16 11 H 0.17 0.95 8.14 -51.93 -0.42 0.53 16 12 C 0.21 2.62 14.46 -20.71 -0.30 2.32 16 13 N -0.39 -5.54 18.55 42.21 0.78 -4.76 16 14 C 0.36 5.96 6.14 -29.04 -0.18 5.78 16 15 O -0.39 -8.21 14.31 -17.77 -0.25 -8.46 16 16 C -0.15 -2.73 5.57 -27.89 -0.16 -2.88 16 17 C 0.03 0.73 4.26 -27.88 -0.12 0.61 16 18 C -0.53 -14.41 9.11 -34.44 -0.31 -14.72 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C -0.10 -0.86 9.96 -39.41 -0.39 -1.25 16 27 C -0.19 -1.58 9.03 -39.46 -0.36 -1.94 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.14 2.00 6.41 -52.49 -0.34 1.66 16 33 H 0.41 2.32 8.76 -40.82 -0.36 1.96 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.02 0.65 8.10 -51.92 -0.42 0.23 16 37 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.75 6.29 -52.49 -0.33 0.42 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -36.85 357.70 -6.37 -43.22 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -4.74 Total: -2.35 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.79 Total: -5.57 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 1.47 Total: -37.14 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.68 Total: -19.79 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.85 -6.37 -43.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813059598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.339 kcal (2) G-P(sol) polarization free energy of solvation -36.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds