Wall clock time and date at job start Tue Mar 31 2020 11:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35972 * 117.00286 * 2 1 4 4 C 1.38719 * 119.98698 * 179.97438 * 3 2 1 5 5 C 1.38088 * 120.01786 * 180.02562 * 4 3 2 6 6 C 1.38852 * 119.97830 * 0.25497 * 5 4 3 7 7 N 1.40116 * 120.00918 * 179.72190 * 6 5 4 8 8 C 1.34774 * 120.00282 * 33.29637 * 7 6 5 9 9 O 1.21298 * 119.99547 * 5.28090 * 8 7 6 10 10 C 1.50700 * 119.99968 * 185.27556 * 8 7 6 11 11 H 1.08998 * 109.47139 * 300.00330 * 10 8 7 12 12 C 1.47199 * 109.47016 * 60.00283 * 10 8 7 13 13 N 8.72442 * 124.98238 * 16.08306 * 2 1 3 14 14 C 1.50704 * 109.46941 * 180.02562 * 10 8 7 15 15 O 1.20759 * 119.99712 * 335.00010 * 14 10 8 16 16 C 1.50692 * 119.99924 * 155.00067 * 14 10 8 17 17 C 1.52998 * 109.47429 * 180.02562 * 16 14 10 18 18 C 1.50701 * 109.47565 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99488 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99916 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00333 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99950 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47267 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.47266 * 119.99829 * 22 20 18 25 25 H 1.48495 * 109.47684 * 239.99909 * 22 20 18 26 26 C 1.38847 * 119.97349 * 359.44922 * 6 5 4 27 27 C 1.38086 * 119.98147 * 0.57079 * 26 6 5 28 28 H 1.09000 * 109.46738 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46775 * 299.99999 * 1 2 3 30 30 H 1.09004 * 109.46851 * 59.99787 * 1 2 3 31 31 H 1.08002 * 119.99571 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.01360 * 179.97438 * 5 4 3 33 33 H 0.96998 * 119.99826 * 213.30032 * 7 6 5 34 34 H 1.08998 * 109.47125 * 299.99938 * 16 14 10 35 35 H 1.08999 * 109.47180 * 60.00084 * 16 14 10 36 36 H 1.09011 * 109.47121 * 300.00302 * 17 16 14 37 37 H 1.09007 * 109.47212 * 59.99671 * 17 16 14 38 38 H 0.97006 * 120.00120 * 180.02562 * 21 20 18 39 39 H 1.07999 * 120.00604 * 180.27895 * 26 6 5 40 40 H 1.08000 * 119.99132 * 179.67861 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4317 1.2837 0.0005 5 6 4.0593 2.5137 0.0011 6 6 3.3033 3.6784 0.0064 7 7 3.9395 4.9268 0.0129 8 6 5.1150 5.0874 -0.6265 9 8 5.5750 4.1800 -1.2870 10 6 5.8577 6.3944 -0.5209 11 1 5.2341 7.1992 -0.9101 12 6 6.1808 6.6626 0.8899 13 7 6.4309 6.8684 1.9803 14 6 7.1317 6.3144 -1.3221 15 8 7.6442 5.2420 -1.5356 16 6 7.7659 7.5725 -1.8566 17 6 9.0377 7.2146 -2.6281 18 6 9.6723 8.4729 -3.1621 19 1 9.2140 9.4319 -2.9707 20 6 10.8378 8.3996 -3.8950 21 7 11.3961 7.2318 -4.1276 22 14 11.6240 9.9592 -4.5575 23 1 10.8062 11.1333 -4.1600 24 1 12.9934 10.0987 -3.9999 25 1 11.6980 9.8856 -6.0388 26 6 1.9168 3.6054 -0.0003 27 6 1.2905 2.3747 -0.0004 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.0196 0.3777 0.0005 32 1 5.1378 2.5699 0.0019 33 1 3.5339 5.6754 0.4776 34 1 7.0666 8.0768 -2.5235 35 1 8.0175 8.2333 -1.0270 36 1 9.7372 6.7100 -1.9615 37 1 8.7856 6.5540 -3.4577 38 1 12.2164 7.1803 -4.6429 39 1 1.3283 4.5110 -0.0007 40 1 0.2120 2.3178 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813059598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:46 Heat of formation + Delta-G solvation = -73.425082 kcal Electronic energy + Delta-G solvation = -24611.867869 eV Core-core repulsion = 20777.816671 eV Total energy + Delta-G solvation = -3834.051198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.16740 -41.03240 -40.02812 -38.28684 -37.81486 -35.61924 -35.50348 -33.47034 -32.53470 -32.12779 -29.95579 -28.12215 -27.63525 -24.45429 -23.93782 -23.34848 -21.91916 -21.13496 -19.82311 -19.15782 -18.79004 -18.32133 -18.12562 -17.13200 -16.84933 -16.60400 -16.41152 -16.12754 -15.92859 -15.86835 -15.39610 -14.99775 -14.70598 -14.46063 -14.29455 -14.21915 -14.09776 -13.86300 -13.77259 -13.72005 -13.38899 -13.10667 -12.87591 -12.83933 -12.43423 -12.33184 -11.87928 -11.84141 -11.64846 -11.37395 -11.25250 -10.93082 -10.55624 -10.48163 -10.02850 -8.77186 -8.16290 -6.29471 0.20136 0.31353 0.70988 1.08969 1.37019 1.44513 1.44941 1.49752 1.58133 1.85992 2.40446 2.43638 2.60727 2.76984 2.91031 3.17662 3.32827 3.82409 3.91057 4.01254 4.16754 4.24353 4.33598 4.45105 4.45429 4.54860 4.60553 4.64642 4.75063 4.85547 4.99912 5.16926 5.26655 5.29107 5.37883 5.53479 5.65479 5.78506 5.87472 6.11749 6.18553 6.23330 6.44769 6.51545 6.91433 6.94492 7.41066 8.96333 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.026435 B = 0.002285 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.948495 B =12251.296329 C =12808.872817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.106 3.894 4 C -0.152 4.152 5 C -0.102 4.102 6 C 0.095 3.905 7 N -0.649 5.649 8 C 0.523 3.477 9 O -0.517 6.517 10 C -0.043 4.043 11 H 0.235 0.765 12 C 0.236 3.764 13 N -0.420 5.420 14 C 0.364 3.636 15 O -0.444 6.444 16 C -0.146 4.146 17 C 0.029 3.971 18 C -0.537 4.537 19 H 0.081 0.919 20 C -0.010 4.010 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.249 1.249 24 H -0.285 1.285 25 H -0.282 1.282 26 C -0.088 4.088 27 C -0.184 4.184 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.432 0.568 34 H 0.133 0.867 35 H 0.113 0.887 36 H -0.021 1.021 37 H -0.013 1.013 38 H 0.261 0.739 39 H 0.170 0.830 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.514 -4.551 10.279 31.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.254 6.254 3 C 0.060 3.940 4 C -0.171 4.171 5 C -0.122 4.122 6 C 0.002 3.998 7 N -0.297 5.297 8 C 0.306 3.694 9 O -0.390 6.390 10 C -0.068 4.068 11 H 0.251 0.749 12 C -0.083 4.083 13 N -0.096 5.096 14 C 0.234 3.766 15 O -0.314 6.314 16 C -0.183 4.183 17 C -0.008 4.008 18 C -0.575 4.575 19 H 0.099 0.901 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.795 3.205 23 H -0.173 1.173 24 H -0.212 1.212 25 H -0.208 1.208 26 C -0.108 4.108 27 C -0.203 4.203 28 H 0.133 0.867 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.132 0.868 33 H 0.272 0.728 34 H 0.151 0.849 35 H 0.131 0.869 36 H -0.003 1.003 37 H 0.005 0.995 38 H 0.070 0.930 39 H 0.187 0.813 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -28.273 -5.724 11.262 30.967 hybrid contribution 0.853 0.406 -0.718 1.187 sum -27.419 -5.318 10.544 29.854 Atomic orbital electron populations 1.23375 0.76223 1.05577 1.02570 1.86074 1.23698 1.26819 1.88774 1.19144 0.91971 0.85341 0.97541 1.20372 0.92472 0.98031 1.06230 1.20929 1.00083 0.91643 0.99557 1.17744 0.92310 0.84530 1.05202 1.43212 1.21480 1.11990 1.53043 1.19958 0.81564 0.88357 0.79482 1.90919 1.66559 1.42213 1.39293 1.19664 0.99972 1.01375 0.85753 0.74867 1.27623 0.94117 0.93500 0.93050 1.81374 1.07251 1.08630 1.12361 1.24658 0.83644 0.91518 0.76753 1.90533 1.59401 1.33187 1.48247 1.22143 0.98824 0.95019 1.02285 1.18824 0.92341 0.95664 0.93984 1.21775 1.08552 0.94307 1.32893 0.90070 1.26135 0.98169 0.99596 0.96826 1.70183 1.20322 1.26426 1.41031 0.85315 0.78093 0.79403 0.77691 1.17251 1.21159 1.20813 1.21040 0.91153 0.99473 0.99120 1.21392 1.01502 0.90790 1.06655 0.86717 0.91144 0.91445 0.85373 0.86825 0.72846 0.84936 0.86944 1.00275 0.99453 0.93020 0.81259 0.81783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.19 10.50 -93.24 -0.98 -7.17 16 3 C 0.11 2.08 6.69 22.50 0.15 2.23 16 4 C -0.15 -3.64 9.98 22.35 0.22 -3.42 16 5 C -0.10 -2.65 8.65 22.38 0.19 -2.45 16 6 C 0.10 1.89 6.28 38.11 0.24 2.13 16 7 N -0.65 -10.56 5.22 -303.38 -1.58 -12.14 16 8 C 0.52 12.49 6.82 87.66 0.60 13.09 16 9 O -0.52 -18.37 12.20 19.64 0.24 -18.13 16 10 C -0.04 -0.84 2.84 -14.09 -0.04 -0.88 16 11 H 0.24 1.28 8.14 -2.39 -0.02 1.26 16 12 C 0.24 5.21 14.46 89.43 1.29 6.50 16 13 N -0.42 -11.19 18.55 20.02 0.37 -10.82 16 14 C 0.36 11.90 6.14 29.10 0.18 12.08 16 15 O -0.44 -19.97 14.31 21.28 0.30 -19.67 16 16 C -0.15 -4.99 5.57 29.84 0.17 -4.83 16 17 C 0.03 1.52 4.26 29.85 0.13 1.65 16 18 C -0.54 -29.29 9.11 25.60 0.23 -29.06 16 19 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 20 C -0.01 -0.58 5.46 84.65 0.46 -0.12 16 21 N -0.94 -59.05 13.29 21.45 0.28 -58.76 16 22 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 23 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 C -0.09 -1.16 9.96 22.38 0.22 -0.94 16 27 C -0.18 -2.53 9.03 22.35 0.20 -2.33 16 28 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 30 H 0.07 0.39 7.66 -2.38 -0.02 0.38 16 31 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 32 H 0.11 3.58 6.41 -2.91 -0.02 3.57 16 33 H 0.43 3.16 8.76 -92.71 -0.81 2.35 16 34 H 0.13 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 36 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 37 H -0.01 -0.77 8.10 -2.38 -0.02 -0.79 16 38 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 39 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 40 H 0.16 1.12 6.29 -2.91 -0.02 1.10 16 Total: -1.00 -89.07 357.70 6.31 -82.77 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 0.28 Total: 3.40 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.36 Total: -5.08 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -0.93 Total: -81.73 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.43 Total: -44.97 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -89.07 6.31 -82.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813059598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.341 kcal (2) G-P(sol) polarization free energy of solvation -89.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds