Wall clock time and date at job start Tue Mar 31 2020 11:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 116.99623 * 2 1 4 4 C 1.38805 * 120.01911 * 359.71847 * 3 2 1 5 5 C 1.38176 * 120.07748 * 179.70371 * 4 3 2 6 6 C 1.38163 * 120.12657 * 0.59472 * 5 4 3 7 7 C 1.38894 * 120.04024 * 359.68006 * 6 5 4 8 8 N 1.39918 * 120.04174 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00296 * 213.34085 * 8 7 6 10 10 O 1.21292 * 119.99587 * 5.27586 * 9 8 7 11 11 C 1.50694 * 120.00360 * 185.27455 * 9 8 7 12 12 H 1.09006 * 109.47010 * 60.00054 * 11 9 8 13 13 C 1.47200 * 109.46998 * 300.00188 * 11 9 8 14 14 N 8.30807 * 149.58624 * 339.35569 * 2 1 3 15 15 C 1.50701 * 109.47181 * 179.97438 * 11 9 8 16 16 O 1.20758 * 119.99785 * 30.00131 * 15 11 9 17 17 C 1.50698 * 120.00018 * 209.99868 * 15 11 9 18 18 C 1.52999 * 109.47310 * 180.02562 * 17 15 11 19 19 C 1.50698 * 109.47310 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00001 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00224 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99716 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00426 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47149 * 59.99759 * 23 21 19 25 25 H 1.48498 * 109.47691 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46819 * 300.00186 * 23 21 19 27 27 C 1.38583 * 120.01576 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.47869 * 300.00683 * 1 2 3 29 29 H 1.09001 * 109.46866 * 60.00985 * 1 2 3 30 30 H 1.09008 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.96154 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.93101 * 180.28248 * 5 4 3 33 33 H 1.08002 * 119.98180 * 179.70209 * 6 5 4 34 34 H 0.96999 * 119.99917 * 33.34537 * 8 7 6 35 35 H 1.09004 * 109.47496 * 300.00473 * 17 15 11 36 36 H 1.09005 * 109.47019 * 59.99961 * 17 15 11 37 37 H 1.08995 * 109.47098 * 300.00340 * 18 17 15 38 38 H 1.09002 * 109.46751 * 59.99760 * 18 17 15 39 39 H 0.97003 * 119.99929 * 179.97438 * 22 21 19 40 40 H 1.07998 * 120.06128 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2903 2.3753 -0.0059 5 6 1.9162 3.6071 0.0003 6 6 3.2957 3.6840 -0.0001 7 6 4.0568 2.5222 0.0001 8 7 5.4539 2.6000 -0.0008 9 6 6.1806 1.6636 -0.6422 10 8 5.6243 0.8085 -1.2982 11 6 7.6843 1.6791 -0.5444 12 1 7.9816 1.5741 0.4990 13 6 8.1974 2.9527 -1.0751 14 7 8.5938 3.9358 -1.4828 15 6 8.2516 0.5355 -1.3454 16 8 7.6651 0.1323 -2.3209 17 6 9.5507 -0.1046 -0.9290 18 6 9.8998 -1.2310 -1.9038 19 6 11.1992 -1.8708 -1.4877 20 1 11.7235 -1.5103 -0.6150 21 6 11.7183 -2.9169 -2.2206 22 7 11.0796 -3.3562 -3.2830 23 14 13.3287 -3.7105 -1.7045 24 1 13.1899 -4.2662 -0.3344 25 1 13.6676 -4.8036 -2.6507 26 1 14.4092 -2.6918 -1.7183 27 6 3.4298 1.2839 0.0005 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 0.2118 2.3183 -0.0101 32 1 1.3259 4.5115 0.0003 33 1 3.7825 4.6481 -0.0001 34 1 5.8993 3.3279 0.4603 35 1 10.3439 0.6430 -0.9391 36 1 9.4488 -0.5125 0.0767 37 1 9.1068 -1.9787 -1.8941 38 1 10.0018 -0.8227 -2.9093 39 1 11.4450 -4.0920 -3.7989 40 1 4.0193 0.3790 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813060139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:49 Heat of formation + Delta-G solvation = -73.706604 kcal Electronic energy + Delta-G solvation = -24809.488456 eV Core-core repulsion = 20975.425051 eV Total energy + Delta-G solvation = -3834.063405 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.23522 -41.04114 -40.04235 -38.35337 -37.87447 -35.72754 -35.55666 -33.53496 -32.63224 -31.59845 -30.16691 -28.12603 -27.75848 -24.73336 -23.86233 -23.11973 -22.00357 -21.15785 -19.95806 -19.40827 -18.59074 -18.24171 -17.49107 -17.05944 -16.87569 -16.72073 -16.63721 -16.43125 -16.12357 -15.79679 -15.76474 -15.12762 -14.60387 -14.50759 -14.40458 -14.25679 -14.07400 -13.82488 -13.75288 -13.43466 -13.24568 -13.12773 -12.75816 -12.75253 -12.50891 -12.29202 -12.06224 -11.86552 -11.66371 -11.40785 -11.31377 -11.19544 -10.53729 -10.52386 -9.48954 -9.08735 -8.16040 -6.29548 0.14471 0.44243 0.68340 1.01142 1.33820 1.44218 1.46754 1.48068 1.55538 1.78354 2.38653 2.44097 2.58031 2.79755 2.87887 3.17657 3.31330 3.87894 3.97724 4.11144 4.18104 4.21306 4.26248 4.40342 4.43284 4.53816 4.59701 4.62699 4.67404 4.74864 5.15891 5.22292 5.23488 5.32122 5.46120 5.52670 5.64858 5.80092 5.87019 6.08654 6.15458 6.18424 6.45750 6.48648 6.85801 6.91008 7.40979 8.96314 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017720 B = 0.002649 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.785776 B =10567.885410 C =11809.336814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.128 3.872 4 C -0.222 4.222 5 C -0.056 4.056 6 C -0.177 4.177 7 C 0.173 3.827 8 N -0.651 5.651 9 C 0.525 3.475 10 O -0.515 6.515 11 C -0.043 4.043 12 H 0.234 0.766 13 C 0.234 3.766 14 N -0.415 5.415 15 C 0.364 3.636 16 O -0.447 6.447 17 C -0.145 4.145 18 C 0.030 3.970 19 C -0.540 4.540 20 H 0.081 0.919 21 C -0.009 4.009 22 N -0.940 5.940 23 Si 0.971 3.029 24 H -0.260 1.260 25 H -0.292 1.292 26 H -0.263 1.263 27 C -0.187 4.187 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.154 0.846 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.433 0.567 35 H 0.117 0.883 36 H 0.132 0.868 37 H -0.015 1.015 38 H -0.020 1.020 39 H 0.261 0.739 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.075 17.159 15.393 30.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C 0.082 3.918 4 C -0.241 4.241 5 C -0.075 4.075 6 C -0.197 4.197 7 C 0.079 3.921 8 N -0.299 5.299 9 C 0.309 3.691 10 O -0.387 6.387 11 C -0.068 4.068 12 H 0.250 0.750 13 C -0.084 4.084 14 N -0.091 5.091 15 C 0.235 3.765 16 O -0.317 6.317 17 C -0.182 4.182 18 C -0.008 4.008 19 C -0.577 4.577 20 H 0.099 0.901 21 C -0.206 4.206 22 N -0.580 5.580 23 Si 0.795 3.205 24 H -0.184 1.184 25 H -0.218 1.218 26 H -0.188 1.188 27 C -0.208 4.208 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.172 0.828 32 H 0.183 0.817 33 H 0.173 0.827 34 H 0.273 0.727 35 H 0.135 0.865 36 H 0.150 0.850 37 H 0.004 0.996 38 H -0.002 1.002 39 H 0.070 0.930 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.055 17.461 13.633 29.882 hybrid contribution 0.628 -1.012 -0.169 1.203 sum -19.427 16.449 13.463 28.797 Atomic orbital electron populations 1.23361 0.76112 1.05462 1.02585 1.86080 1.23843 1.27374 1.88588 1.18986 0.91648 0.85309 0.95876 1.21551 1.01335 0.91679 1.09514 1.21168 0.93701 0.97997 0.94585 1.21144 0.94465 0.97051 1.07087 1.17479 0.82470 0.93413 0.98764 1.43268 1.04344 1.28858 1.53401 1.19988 0.88345 0.81888 0.78928 1.90934 1.72119 1.37350 1.38297 1.19715 0.91911 0.86956 1.08216 0.74953 1.27522 0.94092 0.93071 0.93735 1.81301 1.07681 1.12184 1.07976 1.24689 0.87244 0.81472 0.83080 1.90522 1.58036 1.58384 1.24721 1.22155 0.93657 0.99348 1.03061 1.18811 0.95357 0.92984 0.93610 1.21711 1.07150 1.16471 1.12405 0.90055 1.26138 1.01678 0.97913 0.94912 1.70175 1.41271 1.27798 1.18761 0.85413 0.78882 0.77867 0.78339 1.18444 1.21789 1.18768 1.20319 0.92777 0.98073 1.09625 0.90784 0.91631 0.86947 0.82848 0.81679 0.82653 0.72677 0.86547 0.85041 0.99623 1.00203 0.93001 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.30 10.49 -92.46 -0.97 -9.27 16 3 C 0.13 3.02 6.68 22.49 0.15 3.17 16 4 C -0.22 -3.57 9.04 22.39 0.20 -3.36 16 5 C -0.06 -0.72 10.03 22.24 0.22 -0.50 16 6 C -0.18 -2.63 9.96 22.41 0.22 -2.41 16 7 C 0.17 3.64 6.28 38.14 0.24 3.88 16 8 N -0.65 -11.55 5.26 -303.55 -1.60 -13.15 16 9 C 0.52 13.29 6.81 87.66 0.60 13.88 16 10 O -0.51 -19.20 12.33 19.29 0.24 -18.96 16 11 C -0.04 -0.89 2.86 -14.09 -0.04 -0.93 16 12 H 0.23 1.60 8.12 -2.38 -0.02 1.58 16 13 C 0.23 5.25 14.33 89.44 1.28 6.54 16 14 N -0.42 -10.98 18.54 20.00 0.37 -10.60 16 15 C 0.36 12.26 6.05 29.10 0.18 12.44 16 16 O -0.45 -20.58 14.51 20.91 0.30 -20.28 16 17 C -0.15 -5.06 5.56 29.85 0.17 -4.90 16 18 C 0.03 1.57 4.26 29.85 0.13 1.70 16 19 C -0.54 -29.61 9.11 25.60 0.23 -29.38 16 20 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 21 C -0.01 -0.53 5.46 84.65 0.46 -0.06 16 22 N -0.94 -59.47 13.29 21.45 0.28 -59.18 16 23 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 24 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 27 C -0.19 -5.05 8.59 22.49 0.19 -4.86 16 28 H 0.07 0.64 7.67 -2.39 -0.02 0.63 16 29 H 0.07 0.69 7.65 -2.39 -0.02 0.67 16 30 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.15 1.57 6.29 -2.91 -0.02 1.55 16 32 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.43 3.94 8.61 -92.71 -0.80 3.14 16 35 H 0.12 3.48 8.14 -2.38 -0.02 3.46 16 36 H 0.13 3.62 8.14 -2.38 -0.02 3.60 16 37 H -0.01 -0.89 8.10 -2.39 -0.02 -0.91 16 38 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 39 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.11 3.73 6.42 -2.91 -0.02 3.71 16 Total: -1.00 -90.37 357.66 6.30 -84.07 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 0.29 Total: 5.02 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.35 Total: -3.44 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -0.94 Total: -82.93 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.43 Total: -48.51 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -90.37 6.30 -84.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813060139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.363 kcal (2) G-P(sol) polarization free energy of solvation -90.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds