Wall clock time and date at job start Tue Mar 31 2020 10:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47316 * 2 1 4 4 C 1.50697 * 109.47390 * 120.00816 * 2 1 3 5 5 O 1.20825 * 120.00270 * 103.50431 * 4 2 1 6 6 O 1.34231 * 119.99674 * 283.50121 * 4 2 1 7 7 N 1.46504 * 109.47180 * 240.00623 * 2 1 3 8 8 C 1.46507 * 119.99825 * 305.27105 * 7 2 1 9 9 C 1.34771 * 120.00353 * 125.26460 * 7 2 1 10 10 O 1.21671 * 119.99560 * 359.76025 * 9 7 2 11 11 C 1.46888 * 120.00381 * 179.75861 * 9 7 2 12 12 C 1.36123 * 125.43508 * 340.25812 * 11 9 7 13 13 C 1.41701 * 107.74656 * 180.27803 * 12 11 9 14 14 C 1.40021 * 133.34834 * 179.77773 * 13 12 11 15 15 C 1.36580 * 119.82952 * 179.97438 * 14 13 12 16 16 C 1.38845 * 120.60056 * 359.96146 * 15 14 13 17 17 C 1.37847 * 120.63205 * 0.02562 * 16 15 14 18 18 C 1.39078 * 119.81654 * 0.02562 * 17 16 15 19 19 N 1.37840 * 133.16738 * 180.02562 * 18 17 16 20 20 C 1.36895 * 125.61603 * 359.96840 * 19 18 17 21 21 H 1.08004 * 119.99727 * 222.23201 * 20 19 18 22 22 C 1.39004 * 120.00057 * 42.23440 * 20 19 18 23 23 N 1.31348 * 120.00221 * 200.12491 * 22 20 19 24 24 Si 1.86800 * 120.00140 * 20.12427 * 22 20 19 25 25 H 1.48502 * 109.47289 * 264.82426 * 24 22 20 26 26 H 1.48505 * 109.47020 * 24.82182 * 24 22 20 27 27 H 1.48498 * 109.47762 * 144.82362 * 24 22 20 28 28 H 1.08994 * 109.47094 * 66.65780 * 1 2 3 29 29 H 1.09000 * 109.47146 * 186.66205 * 1 2 3 30 30 H 1.08997 * 109.46988 * 306.66005 * 1 2 3 31 31 H 0.96703 * 116.99981 * 179.97438 * 6 4 2 32 32 H 1.08996 * 109.46669 * 262.17890 * 8 7 2 33 33 H 1.09002 * 109.47257 * 22.17463 * 8 7 2 34 34 H 1.08997 * 109.47070 * 142.17531 * 8 7 2 35 35 H 1.08005 * 126.12701 * 0.02562 * 12 11 9 36 36 H 1.07999 * 120.08401 * 359.97438 * 14 13 12 37 37 H 1.07998 * 119.69529 * 179.97438 * 15 14 13 38 38 H 1.08004 * 119.68390 * 180.02562 * 16 15 14 39 39 H 1.08009 * 120.09190 * 179.97438 * 17 16 15 40 40 H 0.97005 * 119.99976 * 174.99277 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.4642 -1.8357 1.1442 6 8 2.0002 -0.0934 2.4219 7 7 2.0184 -0.6905 -1.1963 8 6 1.5718 -2.0550 -1.4881 9 6 2.8783 -0.0705 -2.0284 10 8 3.2457 1.0643 -1.7884 11 6 3.3721 -0.7648 -3.2250 12 6 3.3592 -2.1123 -3.4173 13 6 3.9269 -2.3725 -4.6893 14 6 4.1749 -3.5477 -5.4089 15 6 4.7495 -3.4784 -6.6460 16 6 5.0904 -2.2514 -7.1992 17 6 4.8558 -1.0808 -6.5102 18 6 4.2728 -1.1260 -5.2483 19 7 3.9214 -0.1540 -4.3364 20 6 4.0923 1.1941 -4.5026 21 1 4.4506 1.7981 -3.6820 22 6 3.8047 1.7855 -5.7272 23 7 4.3191 2.9559 -6.0283 24 14 2.6866 0.9156 -6.9448 25 1 3.5108 0.1491 -7.9136 26 1 1.7881 -0.0145 -6.2147 27 1 1.8719 1.9203 -7.6742 28 1 -0.3633 0.4072 -0.9435 29 1 -0.3633 -1.0207 0.1192 30 1 -0.3633 0.6136 0.8244 31 1 2.3330 -0.5895 3.1824 32 1 2.3231 -2.7648 -1.1423 33 1 0.6287 -2.2460 -0.9760 34 1 1.4312 -2.1692 -2.5629 35 1 2.9870 -2.8511 -2.7229 36 1 3.9126 -4.5066 -4.9868 37 1 4.9402 -4.3862 -7.1990 38 1 5.5437 -2.2137 -8.1788 39 1 5.1249 -0.1310 -6.9486 40 1 4.1780 3.3354 -6.9099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817756868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:13 Heat of formation + Delta-G solvation = -34.689528 kcal Electronic energy + Delta-G solvation = -26921.633177 eV Core-core repulsion = 23089.261679 eV Total energy + Delta-G solvation = -3832.371498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03289 -40.44162 -38.81288 -36.43649 -36.07532 -35.44251 -33.69167 -32.07303 -31.05818 -29.25363 -28.14740 -27.07103 -25.10368 -24.83981 -23.27522 -21.46040 -20.79631 -19.97190 -19.10063 -18.26385 -17.95607 -16.97033 -16.38700 -15.99450 -15.69831 -15.62461 -15.27079 -14.77136 -14.45739 -13.98321 -13.74279 -13.60007 -13.33653 -13.10983 -12.92948 -12.68808 -12.54607 -12.45398 -12.34014 -12.23964 -11.70757 -11.54830 -11.45671 -11.26140 -10.96055 -10.92476 -10.54877 -10.47633 -10.22764 -9.87423 -9.49070 -9.31753 -8.66673 -8.57027 -7.37529 -6.97503 -6.84674 -4.47922 1.56590 2.09590 2.48276 2.58562 2.82348 3.00979 3.10352 3.20761 3.26880 3.88779 3.98249 4.29560 4.59057 4.73929 4.82344 4.90585 5.04024 5.24918 5.28536 5.49903 5.58006 5.68409 5.71499 5.76716 5.86767 5.92828 6.02700 6.13957 6.22379 6.37417 6.40211 6.51333 6.63489 6.69453 6.83049 7.19285 7.25281 7.34252 7.46906 7.60945 7.70295 7.79599 7.92167 8.24837 8.60238 8.76217 9.05253 10.16713 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.005024 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.324362 B = 5572.050178 C = 6677.859067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.152 3.848 3 H 0.137 0.863 4 C 0.469 3.531 5 O -0.505 6.505 6 O -0.515 6.515 7 N -0.599 5.599 8 C 0.075 3.925 9 C 0.592 3.408 10 O -0.523 6.523 11 C -0.017 4.017 12 C -0.207 4.207 13 C -0.120 4.120 14 C -0.082 4.082 15 C -0.155 4.155 16 C -0.137 4.137 17 C -0.095 4.095 18 C 0.048 3.952 19 N -0.246 5.246 20 C -0.337 4.337 21 H 0.134 0.866 22 C 0.080 3.920 23 N -0.822 5.822 24 Si 0.869 3.131 25 H -0.244 1.244 26 H -0.255 1.255 27 H -0.281 1.281 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.408 0.592 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 -8.660 7.813 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.046 3.954 3 H 0.155 0.845 4 C 0.309 3.691 5 O -0.392 6.392 6 O -0.326 6.326 7 N -0.335 5.335 8 C -0.067 4.067 9 C 0.384 3.616 10 O -0.398 6.398 11 C -0.134 4.134 12 C -0.234 4.234 13 C -0.125 4.125 14 C -0.101 4.101 15 C -0.175 4.175 16 C -0.158 4.158 17 C -0.114 4.114 18 C -0.065 4.065 19 N 0.092 4.908 20 C -0.465 4.465 21 H 0.151 0.849 22 C -0.134 4.134 23 N -0.450 5.450 24 Si 0.693 3.307 25 H -0.168 1.168 26 H -0.179 1.179 27 H -0.207 1.207 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.266 0.734 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.165 0.835 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.156 -7.478 7.446 12.750 hybrid contribution -0.183 -0.565 -0.049 0.596 sum -7.339 -8.043 7.397 13.163 Atomic orbital electron populations 1.22077 0.91291 1.03273 1.04534 1.20371 0.95970 0.98735 0.80322 0.84524 1.24182 0.74908 0.85141 0.84849 1.90706 1.42629 1.19719 1.86108 1.84553 1.78592 1.50874 1.18608 1.47243 1.47239 1.16791 1.22253 1.22369 0.99670 0.81954 1.02745 1.17258 0.77506 0.84941 0.81901 1.90800 1.57125 1.17860 1.74029 1.19487 1.08683 0.92050 0.93148 1.21076 1.11070 0.93544 0.97700 1.17971 1.06284 0.92416 0.95813 1.20130 0.99654 0.95849 0.94430 1.20348 1.03835 0.96830 0.96443 1.20544 1.03801 0.91869 0.99577 1.20222 1.00100 0.98717 0.92409 1.18361 1.05804 0.88011 0.94341 1.40198 1.35389 1.05195 1.09981 1.19698 1.44927 0.80063 1.01821 0.84896 1.25531 0.95261 0.95199 0.97413 1.69653 1.37107 1.16441 1.21845 0.86992 0.82029 0.79809 0.81840 1.16818 1.17898 1.20736 0.89880 0.91603 0.90106 0.73363 0.91421 0.91791 0.89168 0.83499 0.87229 0.87355 0.87030 0.86420 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.91 37.16 0.33 -1.21 16 2 C 0.15 2.10 3.15 -69.08 -0.22 1.88 16 3 H 0.14 2.05 6.91 -51.93 -0.36 1.69 16 4 C 0.47 6.18 7.56 36.00 0.27 6.45 16 5 O -0.50 -7.85 15.70 -18.75 -0.29 -8.15 16 6 O -0.52 -5.15 13.42 -39.26 -0.53 -5.67 16 7 N -0.60 -9.99 2.61 -176.73 -0.46 -10.45 16 8 C 0.07 1.03 7.27 59.85 0.44 1.47 16 9 C 0.59 12.83 7.56 -12.76 -0.10 12.73 16 10 O -0.52 -12.89 14.53 5.21 0.08 -12.81 16 11 C -0.02 -0.40 6.47 -82.25 -0.53 -0.93 16 12 C -0.21 -4.20 8.56 -39.02 -0.33 -4.53 16 13 C -0.12 -2.58 6.16 -106.89 -0.66 -3.24 16 14 C -0.08 -1.50 10.06 -39.51 -0.40 -1.89 16 15 C -0.16 -2.72 9.97 -39.96 -0.40 -3.11 16 16 C -0.14 -2.62 10.02 -39.50 -0.40 -3.02 16 17 C -0.09 -2.14 6.76 -39.41 -0.27 -2.40 16 18 C 0.05 1.16 5.18 -83.84 -0.43 0.73 16 19 N -0.25 -6.34 2.42 -56.08 -0.14 -6.48 16 20 C -0.34 -9.42 9.37 -15.01 -0.14 -9.56 16 21 H 0.13 4.08 7.05 -52.48 -0.37 3.71 16 22 C 0.08 2.15 4.89 -17.47 -0.09 2.07 16 23 N -0.82 -22.46 13.95 55.50 0.77 -21.69 16 24 Si 0.87 20.59 24.34 -169.99 -4.14 16.46 16 25 H -0.24 -5.43 5.56 56.52 0.31 -5.11 16 26 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.59 6.78 -51.93 -0.35 0.23 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.41 2.29 9.10 45.56 0.41 2.70 16 32 H 0.07 0.96 6.56 -51.93 -0.34 0.61 16 33 H 0.06 0.70 6.31 -51.93 -0.33 0.38 16 34 H 0.09 1.29 5.65 -51.93 -0.29 1.00 16 35 H 0.15 2.44 4.73 -52.48 -0.25 2.19 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.12 2.73 5.82 -52.48 -0.31 2.42 16 40 H 0.29 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -33.22 326.32 -6.22 -39.44 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -3.52 Total: 9.01 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.92 Total: -4.57 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.18 Total: -38.62 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.75 Total: -26.63 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.14 Total: 16.46 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.22 -6.22 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817756868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.750 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds