Wall clock time and date at job start Tue Mar 31 2020 10:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47316 * 2 1 4 4 C 1.50697 * 109.47390 * 120.00816 * 2 1 3 5 5 O 1.20825 * 120.00270 * 103.50431 * 4 2 1 6 6 O 1.34231 * 119.99674 * 283.50121 * 4 2 1 7 7 N 1.46504 * 109.47180 * 240.00623 * 2 1 3 8 8 C 1.46507 * 119.99825 * 305.27105 * 7 2 1 9 9 C 1.34771 * 120.00353 * 125.26460 * 7 2 1 10 10 O 1.21671 * 119.99560 * 359.76025 * 9 7 2 11 11 C 1.46888 * 120.00381 * 179.75861 * 9 7 2 12 12 C 1.36123 * 125.43508 * 340.25812 * 11 9 7 13 13 C 1.41701 * 107.74656 * 180.27803 * 12 11 9 14 14 C 1.40021 * 133.34834 * 179.77773 * 13 12 11 15 15 C 1.36580 * 119.82952 * 179.97438 * 14 13 12 16 16 C 1.38845 * 120.60056 * 359.96146 * 15 14 13 17 17 C 1.37847 * 120.63205 * 0.02562 * 16 15 14 18 18 C 1.39078 * 119.81654 * 0.02562 * 17 16 15 19 19 N 1.37840 * 133.16738 * 180.02562 * 18 17 16 20 20 C 1.36895 * 125.61603 * 359.96840 * 19 18 17 21 21 H 1.08004 * 119.99727 * 222.23201 * 20 19 18 22 22 C 1.39004 * 120.00057 * 42.23440 * 20 19 18 23 23 N 1.31348 * 120.00221 * 200.12491 * 22 20 19 24 24 Si 1.86800 * 120.00140 * 20.12427 * 22 20 19 25 25 H 1.48502 * 109.47289 * 264.82426 * 24 22 20 26 26 H 1.48505 * 109.47020 * 24.82182 * 24 22 20 27 27 H 1.48498 * 109.47762 * 144.82362 * 24 22 20 28 28 H 1.08994 * 109.47094 * 66.65780 * 1 2 3 29 29 H 1.09000 * 109.47146 * 186.66205 * 1 2 3 30 30 H 1.08997 * 109.46988 * 306.66005 * 1 2 3 31 31 H 0.96703 * 116.99981 * 179.97438 * 6 4 2 32 32 H 1.08996 * 109.46669 * 262.17890 * 8 7 2 33 33 H 1.09002 * 109.47257 * 22.17463 * 8 7 2 34 34 H 1.08997 * 109.47070 * 142.17531 * 8 7 2 35 35 H 1.08005 * 126.12701 * 0.02562 * 12 11 9 36 36 H 1.07999 * 120.08401 * 359.97438 * 14 13 12 37 37 H 1.07998 * 119.69529 * 179.97438 * 15 14 13 38 38 H 1.08004 * 119.68390 * 180.02562 * 16 15 14 39 39 H 1.08009 * 120.09190 * 179.97438 * 17 16 15 40 40 H 0.97005 * 119.99976 * 174.99277 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.4642 -1.8357 1.1442 6 8 2.0002 -0.0934 2.4219 7 7 2.0184 -0.6905 -1.1963 8 6 1.5718 -2.0550 -1.4881 9 6 2.8783 -0.0705 -2.0284 10 8 3.2457 1.0643 -1.7884 11 6 3.3721 -0.7648 -3.2250 12 6 3.3592 -2.1123 -3.4173 13 6 3.9269 -2.3725 -4.6893 14 6 4.1749 -3.5477 -5.4089 15 6 4.7495 -3.4784 -6.6460 16 6 5.0904 -2.2514 -7.1992 17 6 4.8558 -1.0808 -6.5102 18 6 4.2728 -1.1260 -5.2483 19 7 3.9214 -0.1540 -4.3364 20 6 4.0923 1.1941 -4.5026 21 1 4.4506 1.7981 -3.6820 22 6 3.8047 1.7855 -5.7272 23 7 4.3191 2.9559 -6.0283 24 14 2.6866 0.9156 -6.9448 25 1 3.5108 0.1491 -7.9136 26 1 1.7881 -0.0145 -6.2147 27 1 1.8719 1.9203 -7.6742 28 1 -0.3633 0.4072 -0.9435 29 1 -0.3633 -1.0207 0.1192 30 1 -0.3633 0.6136 0.8244 31 1 2.3330 -0.5895 3.1824 32 1 2.3231 -2.7648 -1.1423 33 1 0.6287 -2.2460 -0.9760 34 1 1.4312 -2.1692 -2.5629 35 1 2.9870 -2.8511 -2.7229 36 1 3.9126 -4.5066 -4.9868 37 1 4.9402 -4.3862 -7.1990 38 1 5.5437 -2.2137 -8.1788 39 1 5.1249 -0.1310 -6.9486 40 1 4.1780 3.3354 -6.9099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817756868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:12 Heat of formation + Delta-G solvation = -58.207680 kcal Electronic energy + Delta-G solvation = -26922.653000 eV Core-core repulsion = 23089.261679 eV Total energy + Delta-G solvation = -3833.391322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.61746 -41.64800 -40.25750 -37.80588 -37.39915 -36.77082 -35.50725 -33.56771 -32.51893 -30.86264 -29.68839 -28.32120 -26.70236 -26.17797 -24.69281 -22.97100 -22.18646 -21.56948 -20.58007 -19.82975 -19.21246 -18.17095 -17.85800 -17.57918 -17.24088 -16.85154 -16.69772 -16.26055 -16.15031 -15.40843 -15.33440 -15.08357 -14.77757 -14.55452 -14.47369 -14.22889 -13.95913 -13.91662 -13.48089 -13.27421 -13.22727 -12.80602 -12.70482 -12.63373 -12.52335 -12.36818 -12.27711 -11.92170 -11.64563 -11.50237 -11.30838 -11.03122 -10.38159 -9.93545 -9.04523 -8.82480 -8.61969 -6.51352 -0.02994 0.90617 1.01977 1.09549 1.15255 1.25450 1.31205 1.44359 1.98190 2.03032 2.35437 2.62209 2.79892 3.16498 3.53591 3.84335 3.98826 4.03288 4.07937 4.25512 4.31982 4.38713 4.54952 4.64837 4.68001 4.68520 4.72037 4.82747 4.92762 5.00214 5.10069 5.13406 5.27805 5.31064 5.40961 5.53424 5.69356 5.80389 5.84081 5.97182 6.06934 6.24115 6.41450 6.79321 6.90143 7.04693 7.19541 8.26152 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.005024 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.324362 B = 5572.050178 C = 6677.859067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.141 3.859 3 H 0.116 0.884 4 C 0.479 3.521 5 O -0.529 6.529 6 O -0.505 6.505 7 N -0.589 5.589 8 C 0.069 3.931 9 C 0.583 3.417 10 O -0.571 6.571 11 C -0.046 4.046 12 C -0.174 4.174 13 C -0.142 4.142 14 C -0.068 4.068 15 C -0.153 4.153 16 C -0.111 4.111 17 C -0.146 4.146 18 C 0.033 3.967 19 N -0.285 5.285 20 C -0.359 4.359 21 H 0.080 0.920 22 C 0.045 3.955 23 N -0.871 5.871 24 Si 0.928 3.072 25 H -0.220 1.220 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.430 0.570 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.189 0.811 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.097 0.903 40 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.942 -13.575 7.657 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.035 3.965 3 H 0.134 0.866 4 C 0.321 3.679 5 O -0.419 6.419 6 O -0.318 6.318 7 N -0.323 5.323 8 C -0.072 4.072 9 C 0.375 3.625 10 O -0.451 6.451 11 C -0.160 4.160 12 C -0.200 4.200 13 C -0.147 4.147 14 C -0.086 4.086 15 C -0.171 4.171 16 C -0.131 4.131 17 C -0.166 4.166 18 C -0.080 4.080 19 N 0.051 4.949 20 C -0.487 4.487 21 H 0.098 0.902 22 C -0.164 4.164 23 N -0.503 5.503 24 Si 0.749 3.251 25 H -0.143 1.143 26 H -0.198 1.198 27 H -0.200 1.200 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.292 0.708 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.206 0.794 36 H 0.172 0.828 37 H 0.175 0.825 38 H 0.161 0.839 39 H 0.115 0.885 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.763 -12.417 7.343 16.879 hybrid contribution 0.350 0.647 0.182 0.758 sum -8.413 -11.770 7.525 16.308 Atomic orbital electron populations 1.22078 0.87924 1.05005 1.05223 1.20646 0.98500 0.97496 0.79844 0.86611 1.23785 0.74255 0.84517 0.85386 1.90697 1.43825 1.20693 1.86641 1.84492 1.78149 1.50708 1.18481 1.47283 1.45194 1.17661 1.22112 1.22545 1.01433 0.80119 1.03081 1.17434 0.78083 0.84595 0.82417 1.90771 1.59198 1.19898 1.75245 1.20097 1.09606 0.93447 0.92873 1.21612 1.07922 0.92797 0.97676 1.18479 1.06939 0.92773 0.96477 1.20667 0.97541 0.96228 0.94190 1.20903 1.02153 0.97764 0.96307 1.21090 1.00581 0.91313 1.00136 1.20326 1.03607 0.99506 0.93176 1.18940 1.05522 0.88782 0.94708 1.40166 1.38624 1.04438 1.11685 1.19122 1.47103 0.81520 1.00956 0.90244 1.26094 0.95856 0.95723 0.98702 1.69715 1.39496 1.18204 1.22881 0.86154 0.80047 0.78723 0.80134 1.14318 1.19836 1.19964 0.90556 0.89618 0.87731 0.70766 0.91019 0.88211 0.89505 0.79440 0.82769 0.82464 0.83851 0.88534 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.91 71.98 0.64 -1.95 16 2 C 0.14 3.81 3.15 44.24 0.14 3.95 16 3 H 0.12 3.66 6.91 -2.39 -0.02 3.64 16 4 C 0.48 11.87 7.56 71.23 0.54 12.41 16 5 O -0.53 -15.40 15.70 21.97 0.34 -15.05 16 6 O -0.50 -9.05 13.42 -51.43 -0.69 -9.74 16 7 N -0.59 -19.49 2.61 -831.27 -2.17 -21.66 16 8 C 0.07 1.73 7.27 127.77 0.93 2.65 16 9 C 0.58 26.54 7.56 86.51 0.65 27.20 16 10 O -0.57 -30.79 14.53 -4.26 -0.06 -30.86 16 11 C -0.05 -2.19 6.47 39.91 0.26 -1.93 16 12 C -0.17 -6.73 8.56 22.63 0.19 -6.54 16 13 C -0.14 -5.75 6.16 -21.34 -0.13 -5.88 16 14 C -0.07 -2.11 10.06 22.31 0.22 -1.88 16 15 C -0.15 -4.41 9.97 22.03 0.22 -4.19 16 16 C -0.11 -3.82 10.02 22.32 0.22 -3.60 16 17 C -0.15 -6.51 6.76 22.38 0.15 -6.36 16 18 C 0.03 1.61 5.18 39.06 0.20 1.82 16 19 N -0.28 -15.47 2.42 -331.35 -0.80 -16.27 16 20 C -0.36 -21.99 9.37 84.09 0.79 -21.20 16 21 H 0.08 5.53 7.05 -2.91 -0.02 5.51 16 22 C 0.05 2.63 4.89 84.95 0.42 3.04 16 23 N -0.87 -51.57 13.95 21.67 0.30 -51.27 16 24 Si 0.93 44.65 24.34 68.60 1.67 46.32 16 25 H -0.22 -9.59 5.56 99.48 0.55 -9.04 16 26 H -0.27 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.21 6.78 -2.39 -0.02 1.19 16 30 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.43 3.71 9.10 -74.06 -0.67 3.03 16 32 H 0.07 1.78 6.56 -2.39 -0.02 1.77 16 33 H 0.10 1.81 6.31 -2.39 -0.02 1.79 16 34 H 0.09 2.25 5.65 -2.39 -0.01 2.24 16 35 H 0.19 5.52 4.73 -2.91 -0.01 5.51 16 36 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 38 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 39 H 0.10 4.63 5.82 -2.91 -0.02 4.61 16 40 H 0.29 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -81.72 326.32 4.33 -77.39 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.29 Total: 23.62 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 5.45 Total: -2.47 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -2.67 Total: -89.20 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -0.41 Total: -55.66 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.67 Total: 46.32 kcal Total: -81.72 4.33 -77.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817756868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.187 kcal (2) G-P(sol) polarization free energy of solvation -81.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds