Wall clock time and date at job start Tue Mar 31 2020 11:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36985 * 125.66007 * 2 1 4 4 C 1.46421 * 125.95628 * 0.04936 * 3 2 1 5 5 O 1.21337 * 120.00068 * 359.97438 * 4 3 2 6 6 C 1.38356 * 108.08903 * 180.02562 * 3 2 1 7 7 C 1.39308 * 107.40857 * 0.02562 * 6 3 2 8 8 C 1.36598 * 125.67287 * 180.02562 * 2 1 3 9 9 C 1.47421 * 125.84546 * 359.95929 * 8 2 1 10 10 O 1.21597 * 120.00567 * 345.08313 * 9 8 2 11 11 N 1.34779 * 119.99936 * 165.08395 * 9 8 2 12 12 C 1.46504 * 120.00074 * 3.36902 * 11 9 8 13 13 C 1.50693 * 109.47420 * 84.60784 * 12 11 9 14 14 H 1.08008 * 119.99547 * 354.70574 * 13 12 11 15 15 C 1.37868 * 120.00238 * 174.70548 * 13 12 11 16 16 N 1.31519 * 119.99970 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99944 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47323 * 89.99876 * 17 15 13 19 19 H 1.48506 * 109.47025 * 210.00016 * 17 15 13 20 20 H 1.48502 * 109.46602 * 329.99699 * 17 15 13 21 21 C 1.46504 * 119.99785 * 183.36734 * 11 9 8 22 22 C 1.50694 * 109.46997 * 90.00173 * 21 11 9 23 23 C 1.34510 * 125.79023 * 89.71814 * 22 21 11 24 24 C 1.41381 * 106.84218 * 179.88442 * 23 22 21 25 25 C 1.34519 * 106.84013 * 0.37195 * 24 23 22 26 26 O 1.34299 * 108.41875 * 359.76976 * 25 24 23 27 27 H 1.08998 * 109.47054 * 274.83218 * 1 2 3 28 28 H 1.08997 * 109.47045 * 34.84049 * 1 2 3 29 29 H 1.09004 * 109.46649 * 154.83559 * 1 2 3 30 30 H 1.07997 * 119.99771 * 180.02562 * 4 3 2 31 31 H 1.08003 * 126.29288 * 180.26545 * 6 3 2 32 32 H 1.08006 * 126.22974 * 179.97438 * 7 6 3 33 33 H 1.08998 * 109.47125 * 204.60990 * 12 11 9 34 34 H 1.09003 * 109.46792 * 324.60644 * 12 11 9 35 35 H 0.97002 * 119.99448 * 180.02562 * 16 15 13 36 36 H 1.09010 * 109.46386 * 209.99977 * 21 11 9 37 37 H 1.08997 * 109.46857 * 329.99528 * 21 11 9 38 38 H 1.08003 * 126.58220 * 0.02562 * 23 22 21 39 39 H 1.08004 * 126.58486 * 180.15350 * 24 23 22 40 40 H 1.07998 * 125.78916 * 179.74950 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1130 0.0000 4 6 1.8018 2.5025 0.0010 5 8 0.6133 2.7468 0.0015 6 6 3.5826 0.6953 -0.0006 7 6 3.5786 -0.6978 -0.0015 8 6 2.2616 -1.1097 -0.0005 9 6 1.7943 -2.5078 -0.0003 10 8 0.6366 -2.7620 0.2714 11 7 2.6502 -3.5045 -0.3012 12 6 4.0616 -3.2060 -0.5563 13 6 4.8066 -3.1447 0.7522 14 1 4.2677 -3.2262 1.6847 15 6 6.1759 -2.9846 0.7590 16 7 6.8260 -2.9306 1.9011 17 14 7.1078 -2.8429 -0.8538 18 1 7.1920 -1.4151 -1.2531 19 1 8.4775 -3.3910 -0.6839 20 1 6.3946 -3.6101 -1.9064 21 6 2.1691 -4.8864 -0.3733 22 6 1.7183 -5.1887 -1.7791 23 6 2.4912 -5.6790 -2.7648 24 6 1.6663 -5.8098 -3.9055 25 6 0.4406 -5.3839 -3.5510 26 8 0.4780 -5.0089 -2.2620 27 1 -0.3633 0.0866 1.0240 28 1 -0.3633 0.8434 -0.5871 29 1 -0.3633 -0.9302 -0.4370 30 1 2.5191 3.3098 0.0005 31 1 4.4548 1.3322 0.0033 32 1 4.4481 -1.3386 -0.0026 33 1 4.4910 -3.9879 -1.1826 34 1 4.1435 -2.2461 -1.0664 35 1 7.7894 -2.8176 1.9058 36 1 2.9747 -5.5664 -0.0959 37 1 1.3319 -5.0159 0.3126 38 1 3.5401 -5.9274 -2.6971 39 1 1.9640 -6.1775 -4.8764 40 1 -0.4264 -5.3490 -4.1941 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822900405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:09 Heat of formation + Delta-G solvation = 10.101429 kcal Electronic energy + Delta-G solvation = -26739.920725 eV Core-core repulsion = 22909.491509 eV Total energy + Delta-G solvation = -3830.429216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.49942 -42.58303 -40.46881 -39.31882 -37.35447 -34.78793 -33.99636 -33.76574 -32.44135 -30.60357 -29.95927 -27.50611 -27.33234 -25.31689 -24.40201 -22.65380 -22.15327 -21.83018 -20.98211 -20.09020 -19.12339 -18.31353 -18.18180 -17.57549 -17.20121 -16.82302 -16.74184 -16.42422 -16.21346 -15.86052 -15.32466 -15.14336 -14.91455 -14.68804 -14.45722 -14.38612 -14.01817 -13.92865 -13.70981 -13.60295 -13.28618 -13.21964 -13.04911 -12.61217 -12.55911 -12.09422 -11.90314 -11.66064 -11.08611 -10.87991 -10.82614 -10.75922 -9.85329 -9.63741 -9.46190 -9.24742 -8.25837 -6.32953 -0.13191 0.67141 1.04916 1.46187 1.47488 1.52150 1.57182 1.73370 2.05030 2.18244 2.31326 2.37818 2.44488 3.07485 3.35605 3.52909 3.79705 3.88077 4.09195 4.14712 4.21215 4.29730 4.32642 4.42136 4.51738 4.55098 4.57948 4.62905 4.85007 4.91472 5.00979 5.16597 5.21333 5.29900 5.41440 5.47082 5.61771 5.69641 5.96270 6.09790 6.13630 6.23690 6.42807 6.49723 6.71468 7.04640 7.28914 8.89524 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008599 B = 0.006742 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.424394 B = 4151.889217 C = 6539.699666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.395 5.395 3 C -0.090 4.090 4 C 0.422 3.578 5 O -0.508 6.508 6 C -0.138 4.138 7 C -0.172 4.172 8 C -0.040 4.040 9 C 0.580 3.420 10 O -0.585 6.585 11 N -0.575 5.575 12 C 0.195 3.805 13 C -0.532 4.532 14 H 0.032 0.968 15 C 0.034 3.966 16 N -0.931 5.931 17 Si 0.922 3.078 18 H -0.250 1.250 19 H -0.286 1.286 20 H -0.240 1.240 21 C 0.196 3.804 22 C -0.048 4.048 23 C -0.199 4.199 24 C -0.221 4.221 25 C -0.045 4.045 26 O -0.194 6.194 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.187 0.813 31 H 0.186 0.814 32 H 0.190 0.810 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.271 0.729 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.159 0.841 39 H 0.176 0.824 40 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.617 3.123 -11.816 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.068 5.068 3 C -0.204 4.204 4 C 0.285 3.715 5 O -0.383 6.383 6 C -0.164 4.164 7 C -0.196 4.196 8 C -0.157 4.157 9 C 0.370 3.630 10 O -0.469 6.469 11 N -0.304 5.304 12 C 0.074 3.926 13 C -0.570 4.570 14 H 0.051 0.949 15 C -0.167 4.167 16 N -0.569 5.569 17 Si 0.744 3.256 18 H -0.174 1.174 19 H -0.211 1.211 20 H -0.163 1.163 21 C 0.073 3.927 22 C -0.099 4.099 23 C -0.219 4.219 24 C -0.240 4.240 25 C -0.112 4.112 26 O -0.091 6.091 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.203 0.797 31 H 0.204 0.796 32 H 0.206 0.794 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.103 0.897 38 H 0.176 0.824 39 H 0.193 0.807 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.319 3.245 -11.410 13.938 hybrid contribution 0.766 -0.549 0.000 0.943 sum -6.553 2.696 -11.410 13.431 Atomic orbital electron populations 1.22259 0.75464 1.04768 1.03986 1.44042 1.07316 1.04642 1.50788 1.22418 0.91331 0.90453 1.16213 1.24196 0.91183 0.88163 0.67994 1.90519 1.22491 1.87053 1.38269 1.21939 0.95554 0.94709 1.04183 1.23311 0.96591 0.97320 1.02416 1.20320 0.91728 0.87409 1.16286 1.17458 0.84479 0.84631 0.76398 1.90663 1.18963 1.85048 1.52200 1.47665 1.10261 1.05701 1.66756 1.20474 0.76597 0.99182 0.96319 1.21228 0.92422 1.51256 0.92141 0.94942 1.25618 0.97876 0.93546 0.99620 1.70031 1.09288 1.49592 1.27994 0.86097 0.78353 0.80829 0.80307 1.17410 1.21137 1.16305 1.19801 1.00801 0.83036 0.89036 1.22949 0.83030 1.05857 0.98097 1.21952 1.01534 1.05423 0.92949 1.22168 0.93277 1.07504 1.01016 1.24881 1.01797 1.02018 0.82515 1.84080 1.31906 1.66625 1.26459 0.90735 0.87836 0.89898 0.79714 0.79629 0.79364 0.93020 0.92027 0.91997 0.85416 0.89748 0.82380 0.80690 0.74734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.49 9.87 127.77 1.26 3.75 16 2 N -0.39 -14.38 3.17 -520.81 -1.65 -16.03 16 3 C -0.09 -2.71 6.86 40.50 0.28 -2.43 16 4 C 0.42 9.34 11.66 69.95 0.82 10.15 16 5 O -0.51 -14.45 15.53 -3.21 -0.05 -14.50 16 6 C -0.14 -4.28 10.84 22.56 0.24 -4.03 16 7 C -0.17 -6.83 8.19 22.47 0.18 -6.65 16 8 C -0.04 -1.66 6.68 40.76 0.27 -1.39 16 9 C 0.58 25.75 7.55 86.66 0.65 26.41 16 10 O -0.59 -27.45 14.36 -4.02 -0.06 -27.50 16 11 N -0.58 -23.97 2.45 -834.40 -2.05 -26.01 16 12 C 0.20 8.20 3.80 85.63 0.33 8.52 16 13 C -0.53 -26.68 7.61 25.60 0.19 -26.49 16 14 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 15 C 0.03 1.72 5.21 84.65 0.44 2.16 16 16 N -0.93 -51.87 13.96 21.44 0.30 -51.57 16 17 Si 0.92 36.58 27.29 68.60 1.87 38.45 16 18 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 19 H -0.29 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.24 -8.63 6.39 99.48 0.64 -7.99 16 21 C 0.20 7.14 5.94 85.63 0.51 7.65 16 22 C -0.05 -1.63 6.90 24.83 0.17 -1.46 16 23 C -0.20 -5.77 10.81 22.19 0.24 -5.53 16 24 C -0.22 -5.30 10.91 22.19 0.24 -5.06 16 25 C -0.04 -1.10 12.09 66.97 0.81 -0.29 16 26 O -0.19 -6.54 10.65 -2.48 -0.03 -6.57 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.10 3.03 6.56 -2.39 -0.02 3.01 16 29 H 0.08 2.93 6.37 -2.39 -0.02 2.92 16 30 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.19 8.21 2.77 -2.91 -0.01 8.20 16 33 H 0.05 2.04 6.72 -2.39 -0.02 2.02 16 34 H 0.06 2.55 4.42 -2.39 -0.01 2.54 16 35 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 36 H 0.13 4.22 8.07 -2.38 -0.02 4.20 16 37 H 0.08 3.20 7.38 -2.39 -0.02 3.18 16 38 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.24 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -71.49 340.01 6.00 -65.49 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 1.02 Total: 32.92 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.64 Total: 5.32 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -3.40 Total: -93.61 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.13 Total: -48.57 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 1.87 Total: 38.45 kcal Total: -71.49 6.00 -65.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822900405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.592 kcal (2) G-P(sol) polarization free energy of solvation -71.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds