Wall clock time and date at job start Tue Mar 31 2020 11:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35674 * 116.99535 * 2 1 4 4 C 1.38501 * 120.08056 * 0.21059 * 3 2 1 5 5 C 1.39396 * 119.93468 * 180.21228 * 4 3 2 6 6 C 1.43200 * 119.96484 * 179.78664 * 5 4 3 7 7 N 5.83734 * 81.17217 * 359.97438 * 2 1 3 8 8 C 1.39827 * 120.07935 * 359.81201 * 5 4 3 9 9 C 1.37559 * 120.15172 * 359.97438 * 8 5 4 10 10 C 1.39749 * 120.06692 * 359.96249 * 9 8 5 11 11 C 1.47622 * 120.03801 * 179.97438 * 10 9 8 12 12 O 1.21582 * 119.99730 * 187.87516 * 11 10 9 13 13 N 1.34776 * 119.99761 * 7.87717 * 11 10 9 14 14 C 1.47427 * 125.64585 * 174.86796 * 13 11 10 15 15 C 1.55390 * 104.87377 * 204.17023 * 14 13 11 16 16 C 1.55156 * 101.36416 * 323.01627 * 15 14 13 17 17 O 1.42894 * 110.71975 * 277.04397 * 16 15 14 18 18 C 1.50701 * 110.71740 * 153.94616 * 16 15 14 19 19 H 1.07993 * 120.00238 * 2.44495 * 18 16 15 20 20 C 1.37878 * 119.99738 * 182.43903 * 18 16 15 21 21 N 1.31513 * 120.00223 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 119.99868 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47001 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47236 * 120.00156 * 22 20 18 25 25 H 1.48502 * 109.47010 * 240.00029 * 22 20 18 26 26 C 1.47019 * 125.65304 * 354.91509 * 13 11 10 27 27 H 1.08991 * 109.47012 * 60.00150 * 1 2 3 28 28 H 1.09003 * 109.46352 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46790 * 299.99400 * 1 2 3 30 30 H 1.07999 * 120.03256 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.92432 * 179.97438 * 8 5 4 32 32 H 1.08004 * 119.96471 * 179.97438 * 9 8 5 33 33 H 1.09005 * 110.36610 * 323.00592 * 14 13 11 34 34 H 1.08994 * 110.36706 * 85.21191 * 14 13 11 35 35 H 1.08993 * 111.18463 * 204.97994 * 15 14 13 36 36 H 1.08998 * 111.02220 * 80.98087 * 15 14 13 37 37 H 0.96701 * 113.99970 * 177.55940 * 17 16 15 38 38 H 0.97000 * 120.00157 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.88545 * 59.47622 * 26 13 11 40 40 H 1.09008 * 109.87595 * 298.32203 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2921 2.3715 0.0044 5 6 1.9280 3.6119 -0.0001 6 6 1.1503 4.8144 -0.0002 7 7 0.5332 5.7682 -0.0026 8 6 3.3244 3.6836 -0.0051 9 6 4.0754 2.5311 -0.0050 10 6 3.4444 1.2842 0.0008 11 6 4.2510 0.0479 0.0003 12 8 3.7089 -1.0315 -0.1390 13 7 5.5882 0.1156 0.1542 14 6 6.4982 -1.0375 0.2794 15 6 7.7400 -0.4858 1.0332 16 6 7.8540 0.9400 0.4319 17 8 8.5492 0.9082 -0.8161 18 6 8.5383 1.8727 1.3977 19 1 8.9059 1.4982 2.3415 20 6 8.6951 3.2043 1.0762 21 7 8.2471 3.6605 -0.0730 22 14 9.5439 4.3604 2.2731 23 1 9.9518 3.6058 3.4853 24 1 10.7454 4.9469 1.6270 25 1 8.6088 5.4476 2.6587 26 6 6.3810 1.3517 0.2261 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2135 2.3170 0.0083 31 1 3.8145 4.6460 -0.0089 32 1 5.1538 2.5900 -0.0093 33 1 6.0262 -1.8322 0.8574 34 1 6.7832 -1.4046 -0.7065 35 1 8.6294 -1.0755 0.8116 36 1 7.5586 -0.4435 2.1071 37 1 8.6148 1.7691 -1.2518 38 1 8.3577 4.5973 -0.2993 39 1 6.0449 1.9593 1.0662 40 1 6.2790 1.9119 -0.7034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823528553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:26 Heat of formation + Delta-G solvation = -34.577165 kcal Electronic energy + Delta-G solvation = -26563.758623 eV Core-core repulsion = 22731.391997 eV Total energy + Delta-G solvation = -3832.366625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68883 -39.16190 -37.86032 -37.19165 -36.24902 -34.28734 -32.38980 -32.06341 -30.39946 -29.91233 -28.04725 -27.39790 -25.69691 -24.71364 -22.39713 -22.31751 -20.09821 -19.46400 -19.16308 -17.43147 -17.01678 -16.60338 -16.21284 -15.89946 -15.62092 -15.17793 -14.91992 -14.47443 -14.09581 -14.03056 -13.84058 -13.68988 -13.17125 -13.09257 -13.00946 -12.76740 -12.70965 -12.28260 -12.06248 -11.72483 -11.68019 -11.61821 -11.34682 -11.11888 -11.08561 -10.66554 -10.64573 -10.45300 -10.28609 -9.50654 -9.37939 -9.09461 -8.79916 -8.39062 -8.36735 -7.93715 -6.44195 -4.51774 0.38603 1.30515 2.48662 2.57663 3.11129 3.17779 3.21996 3.25278 3.38453 3.47936 3.68494 3.95071 4.16245 4.66020 4.76274 4.84902 4.92039 4.97299 5.03453 5.17128 5.35861 5.42656 5.51494 5.64124 5.71540 5.77788 5.89942 5.94525 6.11617 6.18392 6.24865 6.35005 6.51165 6.58026 6.69715 6.84683 6.95214 7.19826 7.26175 7.29970 7.60023 7.85574 8.12818 8.52386 8.66731 9.17830 9.28996 10.63607 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.004992 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.556960 B = 5608.035098 C = 7507.662885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.276 6.276 3 C 0.178 3.822 4 C -0.182 4.182 5 C 0.025 3.975 6 C 0.259 3.741 7 N -0.417 5.417 8 C -0.112 4.112 9 C -0.082 4.082 10 C -0.131 4.131 11 C 0.565 3.435 12 O -0.537 6.537 13 N -0.606 5.606 14 C 0.112 3.888 15 C -0.119 4.119 16 C 0.247 3.753 17 O -0.582 6.582 18 C -0.534 4.534 19 H 0.069 0.931 20 C 0.072 3.928 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.077 3.923 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.196 0.804 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.384 0.616 38 H 0.271 0.729 39 H 0.080 0.920 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.105 -2.624 0.056 10.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.187 6.187 3 C 0.130 3.870 4 C -0.204 4.204 5 C 0.021 3.979 6 C -0.056 4.056 7 N -0.092 5.092 8 C -0.133 4.133 9 C -0.099 4.099 10 C -0.136 4.136 11 C 0.354 3.646 12 O -0.416 6.416 13 N -0.339 5.339 14 C -0.010 4.010 15 C -0.157 4.157 16 C 0.206 3.794 17 O -0.391 6.391 18 C -0.572 4.572 19 H 0.087 0.913 20 C -0.131 4.131 21 N -0.540 5.540 22 Si 0.729 3.271 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.044 4.044 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.212 0.788 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.235 0.765 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.315 -2.409 0.010 11.569 hybrid contribution 0.245 1.355 0.435 1.444 sum -11.071 -1.053 0.445 11.130 Atomic orbital electron populations 1.23176 0.78981 1.04342 1.01143 1.86433 1.20499 1.24839 1.86883 1.18762 0.90821 0.84516 0.92933 1.21044 1.00227 0.90369 1.08713 1.15884 0.91956 0.86640 1.03420 1.25708 0.93214 0.92953 0.93753 1.81236 1.08990 1.10519 1.08479 1.21148 0.90829 1.00049 1.01260 1.23217 1.05016 0.89701 0.91969 1.19643 0.90467 0.94863 1.08600 1.17604 0.80814 0.88211 0.77945 1.90770 1.71014 1.29307 1.50486 1.48595 1.05060 1.10075 1.70186 1.22285 0.89980 0.88499 1.00269 1.22867 0.96119 0.97517 0.99149 1.19528 0.85784 0.90833 0.83206 1.86143 1.78852 1.37397 1.36749 1.21620 1.38494 0.93254 1.03871 0.91316 1.25031 0.94351 0.98166 0.95511 1.69616 1.46345 1.16298 1.21775 0.86374 0.79375 0.80370 0.81012 1.19574 1.20718 1.20704 1.23570 0.94605 0.85119 1.01140 0.92592 0.87938 0.92630 0.84243 0.84137 0.78804 0.91566 0.91687 0.90325 0.90421 0.76534 0.91872 0.90220 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.28 -4.05 8.58 -40.56 -0.35 -4.39 16 3 C 0.18 2.58 6.69 -38.77 -0.26 2.32 16 4 C -0.18 -2.15 8.72 -39.05 -0.34 -2.49 16 5 C 0.02 0.30 5.73 -106.95 -0.61 -0.31 16 6 C 0.26 3.31 15.31 -22.47 -0.34 2.97 16 7 N -0.42 -6.03 18.54 41.84 0.78 -5.25 16 8 C -0.11 -1.46 9.72 -39.24 -0.38 -1.84 16 9 C -0.08 -1.24 8.57 -39.26 -0.34 -1.58 16 10 C -0.13 -2.16 5.89 -104.78 -0.62 -2.78 16 11 C 0.57 10.89 7.80 -12.43 -0.10 10.80 16 12 O -0.54 -11.51 15.48 -16.55 -0.26 -11.76 16 13 N -0.61 -11.60 3.33 -175.97 -0.59 -12.18 16 14 C 0.11 2.05 6.89 -2.27 -0.02 2.03 16 15 C -0.12 -2.23 6.26 -24.32 -0.15 -2.39 16 16 C 0.25 5.32 0.85 -89.94 -0.08 5.24 16 17 O -0.58 -13.33 13.07 -35.23 -0.46 -13.79 16 18 C -0.53 -12.47 8.11 -34.44 -0.28 -12.75 16 19 H 0.07 1.62 7.77 -52.49 -0.41 1.21 16 20 C 0.07 1.66 5.27 -17.82 -0.09 1.56 16 21 N -0.90 -20.55 10.96 55.43 0.61 -19.95 16 22 Si 0.90 18.57 29.54 -169.99 -5.02 13.55 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 26 C 0.08 1.52 3.37 -3.07 -0.01 1.51 16 27 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 30 H 0.14 1.26 6.29 -52.49 -0.33 0.93 16 31 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.20 3.24 2.74 -58.39 -0.16 3.08 16 33 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 37 H 0.38 8.86 7.23 45.56 0.33 9.18 16 38 H 0.27 5.97 8.31 -40.82 -0.34 5.63 16 39 H 0.08 1.59 6.34 -51.93 -0.33 1.26 16 40 H 0.08 1.57 6.65 -51.92 -0.35 1.23 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -27.21 339.06 -6.51 -33.72 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -3.70 Total: 11.49 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.63 Total: 3.46 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.80 Total: -37.38 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -1.06 Total: -29.95 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.21 -6.51 -33.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.857 kcal (2) G-P(sol) polarization free energy of solvation -27.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds