Wall clock time and date at job start Tue Mar 31 2020 11:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35674 * 116.99535 * 2 1 4 4 C 1.38501 * 120.08056 * 0.21059 * 3 2 1 5 5 C 1.39396 * 119.93468 * 180.21228 * 4 3 2 6 6 C 1.43200 * 119.96484 * 179.78664 * 5 4 3 7 7 N 5.83734 * 81.17217 * 359.97438 * 2 1 3 8 8 C 1.39827 * 120.07935 * 359.81201 * 5 4 3 9 9 C 1.37559 * 120.15172 * 359.97438 * 8 5 4 10 10 C 1.39749 * 120.06692 * 359.96249 * 9 8 5 11 11 C 1.47622 * 120.03801 * 179.97438 * 10 9 8 12 12 O 1.21582 * 119.99730 * 187.87516 * 11 10 9 13 13 N 1.34776 * 119.99761 * 7.87717 * 11 10 9 14 14 C 1.47427 * 125.64585 * 174.86796 * 13 11 10 15 15 C 1.55390 * 104.87377 * 204.17023 * 14 13 11 16 16 C 1.55156 * 101.36416 * 323.01627 * 15 14 13 17 17 O 1.42894 * 110.71975 * 277.04397 * 16 15 14 18 18 C 1.50701 * 110.71740 * 153.94616 * 16 15 14 19 19 H 1.07993 * 120.00238 * 2.44495 * 18 16 15 20 20 C 1.37878 * 119.99738 * 182.43903 * 18 16 15 21 21 N 1.31513 * 120.00223 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 119.99868 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47001 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47236 * 120.00156 * 22 20 18 25 25 H 1.48502 * 109.47010 * 240.00029 * 22 20 18 26 26 C 1.47019 * 125.65304 * 354.91509 * 13 11 10 27 27 H 1.08991 * 109.47012 * 60.00150 * 1 2 3 28 28 H 1.09003 * 109.46352 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46790 * 299.99400 * 1 2 3 30 30 H 1.07999 * 120.03256 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.92432 * 179.97438 * 8 5 4 32 32 H 1.08004 * 119.96471 * 179.97438 * 9 8 5 33 33 H 1.09005 * 110.36610 * 323.00592 * 14 13 11 34 34 H 1.08994 * 110.36706 * 85.21191 * 14 13 11 35 35 H 1.08993 * 111.18463 * 204.97994 * 15 14 13 36 36 H 1.08998 * 111.02220 * 80.98087 * 15 14 13 37 37 H 0.96701 * 113.99970 * 177.55940 * 17 16 15 38 38 H 0.97000 * 120.00157 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.88545 * 59.47622 * 26 13 11 40 40 H 1.09008 * 109.87595 * 298.32203 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2921 2.3715 0.0044 5 6 1.9280 3.6119 -0.0001 6 6 1.1503 4.8144 -0.0002 7 7 0.5332 5.7682 -0.0026 8 6 3.3244 3.6836 -0.0051 9 6 4.0754 2.5311 -0.0050 10 6 3.4444 1.2842 0.0008 11 6 4.2510 0.0479 0.0003 12 8 3.7089 -1.0315 -0.1390 13 7 5.5882 0.1156 0.1542 14 6 6.4982 -1.0375 0.2794 15 6 7.7400 -0.4858 1.0332 16 6 7.8540 0.9400 0.4319 17 8 8.5492 0.9082 -0.8161 18 6 8.5383 1.8727 1.3977 19 1 8.9059 1.4982 2.3415 20 6 8.6951 3.2043 1.0762 21 7 8.2471 3.6605 -0.0730 22 14 9.5439 4.3604 2.2731 23 1 9.9518 3.6058 3.4853 24 1 10.7454 4.9469 1.6270 25 1 8.6088 5.4476 2.6587 26 6 6.3810 1.3517 0.2261 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2135 2.3170 0.0083 31 1 3.8145 4.6460 -0.0089 32 1 5.1538 2.5900 -0.0093 33 1 6.0262 -1.8322 0.8574 34 1 6.7832 -1.4046 -0.7065 35 1 8.6294 -1.0755 0.8116 36 1 7.5586 -0.4435 2.1071 37 1 8.6148 1.7691 -1.2518 38 1 8.3577 4.5973 -0.2993 39 1 6.0449 1.9593 1.0662 40 1 6.2790 1.9119 -0.7034 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823528553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:25 Heat of formation + Delta-G solvation = -50.728159 kcal Electronic energy + Delta-G solvation = -26564.458982 eV Core-core repulsion = 22731.391997 eV Total energy + Delta-G solvation = -3833.066985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89109 -40.51781 -38.93328 -38.75002 -37.35868 -35.94337 -34.13849 -33.33825 -31.50912 -31.33213 -29.59727 -28.22275 -27.25304 -26.09789 -23.82926 -23.40552 -21.53378 -20.90461 -20.35546 -19.08756 -18.34356 -17.68746 -17.59481 -17.05445 -16.88470 -16.63502 -16.36921 -15.99903 -15.29308 -15.08609 -15.06171 -14.82649 -14.73391 -14.56963 -14.46954 -13.99948 -13.85983 -13.42259 -13.40673 -13.29366 -13.21347 -12.80283 -12.66213 -12.40484 -12.28488 -12.21552 -12.08681 -11.99277 -11.91149 -11.04676 -10.99147 -10.55213 -10.21232 -10.08322 -9.62989 -9.29836 -8.19607 -6.32612 -0.73164 0.25195 1.39691 1.45266 1.46818 1.54134 1.61241 2.05189 2.15612 2.26194 2.45523 2.61206 2.77874 3.06769 3.49702 3.67685 3.89571 3.93596 4.01028 4.09556 4.19156 4.33041 4.36706 4.39243 4.42995 4.58781 4.67948 4.74431 4.78426 4.85977 4.96438 5.07288 5.14118 5.16915 5.33084 5.34964 5.48441 5.54694 5.82826 6.12154 6.26053 6.32275 6.61916 6.72617 7.17919 7.38516 7.48466 8.87004 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.004992 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.556960 B = 5608.035098 C = 7507.662885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.306 6.306 3 C 0.177 3.823 4 C -0.161 4.161 5 C 0.038 3.962 6 C 0.281 3.719 7 N -0.440 5.440 8 C -0.109 4.109 9 C -0.085 4.085 10 C -0.158 4.158 11 C 0.561 3.439 12 O -0.565 6.565 13 N -0.611 5.611 14 C 0.113 3.887 15 C -0.112 4.112 16 C 0.231 3.769 17 O -0.591 6.591 18 C -0.555 4.555 19 H 0.061 0.939 20 C 0.043 3.957 21 N -0.907 5.907 22 Si 0.951 3.049 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.277 1.277 26 C 0.099 3.901 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.174 0.826 31 H 0.155 0.845 32 H 0.177 0.823 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.380 0.620 38 H 0.274 0.726 39 H 0.076 0.924 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.740 -1.817 0.438 11.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.218 6.218 3 C 0.128 3.872 4 C -0.182 4.182 5 C 0.034 3.966 6 C -0.035 4.035 7 N -0.116 5.116 8 C -0.129 4.129 9 C -0.102 4.102 10 C -0.162 4.162 11 C 0.352 3.648 12 O -0.446 6.446 13 N -0.343 5.343 14 C -0.009 4.009 15 C -0.150 4.150 16 C 0.191 3.809 17 O -0.400 6.400 18 C -0.593 4.593 19 H 0.079 0.921 20 C -0.159 4.159 21 N -0.546 5.546 22 Si 0.778 3.222 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.203 1.203 26 C -0.023 4.023 27 H 0.093 0.907 28 H 0.133 0.867 29 H 0.094 0.906 30 H 0.191 0.809 31 H 0.172 0.828 32 H 0.194 0.806 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.958 -1.602 0.391 13.062 hybrid contribution 0.687 1.084 0.298 1.317 sum -12.271 -0.518 0.690 12.301 Atomic orbital electron populations 1.23540 0.76231 1.05942 1.02983 1.86396 1.23462 1.25177 1.86726 1.18798 0.90224 0.85473 0.92684 1.21283 1.01665 0.88952 1.06325 1.15821 0.91473 0.86710 1.02594 1.25516 0.92529 0.92468 0.92954 1.81279 1.09860 1.11161 1.09260 1.21207 0.91223 0.99812 1.00681 1.22886 1.04193 0.90090 0.93059 1.19555 0.91457 0.93891 1.11290 1.18086 0.80715 0.88979 0.77031 1.90735 1.71378 1.30561 1.51889 1.48662 1.05374 1.09957 1.70307 1.22285 0.89779 0.88660 1.00184 1.22839 0.96634 0.96132 0.99420 1.19748 0.86467 0.92170 0.82519 1.86136 1.79333 1.37137 1.37365 1.21779 1.39406 0.94049 1.04070 0.92081 1.25514 0.94747 0.99006 0.96636 1.69663 1.46199 1.16565 1.22213 0.85611 0.78384 0.78872 0.79358 1.19957 1.21083 1.20275 1.23243 0.93491 0.85050 1.00548 0.90703 0.86739 0.90650 0.80880 0.82779 0.80635 0.90519 0.92034 0.89754 0.89749 0.77018 0.91628 0.90652 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.31 -8.53 8.58 -69.03 -0.59 -9.12 16 3 C 0.18 4.84 6.69 22.80 0.15 5.00 16 4 C -0.16 -3.30 8.72 22.61 0.20 -3.10 16 5 C 0.04 0.82 5.73 -21.37 -0.12 0.70 16 6 C 0.28 6.35 15.31 88.33 1.35 7.70 16 7 N -0.44 -11.62 18.54 19.00 0.35 -11.27 16 8 C -0.11 -2.65 9.72 22.49 0.22 -2.43 16 9 C -0.08 -2.54 8.57 22.47 0.19 -2.34 16 10 C -0.16 -5.14 5.89 -19.97 -0.12 -5.26 16 11 C 0.56 21.85 7.80 86.72 0.68 22.52 16 12 O -0.56 -24.44 15.48 16.91 0.26 -24.18 16 13 N -0.61 -23.66 3.33 -828.91 -2.76 -26.42 16 14 C 0.11 4.16 6.89 87.02 0.60 4.76 16 15 C -0.11 -4.24 6.26 32.16 0.20 -4.04 16 16 C 0.23 10.06 0.85 -10.35 -0.01 10.05 16 17 O -0.59 -27.44 13.07 -148.98 -1.95 -29.39 16 18 C -0.55 -26.04 8.11 25.60 0.21 -25.83 16 19 H 0.06 2.89 7.77 -2.91 -0.02 2.87 16 20 C 0.04 1.96 5.27 84.65 0.45 2.40 16 21 N -0.91 -41.30 10.96 21.45 0.24 -41.07 16 22 Si 0.95 37.73 29.54 68.60 2.03 39.76 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 26 C 0.10 3.94 3.37 86.73 0.29 4.24 16 27 H 0.07 0.87 7.67 -2.39 -0.02 0.85 16 28 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 0.86 7.65 -2.39 -0.02 0.84 16 30 H 0.17 2.35 6.29 -2.91 -0.02 2.33 16 31 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.18 5.95 2.74 -8.46 -0.02 5.93 16 33 H 0.08 2.64 8.09 -2.38 -0.02 2.62 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.08 3.04 8.14 -2.39 -0.02 3.03 16 36 H 0.08 3.04 8.04 -2.39 -0.02 3.02 16 37 H 0.38 17.85 7.23 -74.06 -0.54 17.32 16 38 H 0.27 11.92 8.31 -92.71 -0.77 11.15 16 39 H 0.08 3.06 6.34 -2.39 -0.02 3.05 16 40 H 0.07 2.91 6.65 -2.38 -0.02 2.90 16 Total: -1.00 -57.81 339.06 3.54 -54.27 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.56 Total: 31.84 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 5.40 Total: 15.58 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.17 Total: -78.75 kcal Atomic # 8 Polarization: -60.41 SS G_CDS: -2.28 Total: -62.69 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -57.81 3.54 -54.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.541 kcal (2) G-P(sol) polarization free energy of solvation -57.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds