Wall clock time and date at job start Tue Mar 31 2020 11:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 119.99908 * 2 1 4 4 C 1.50702 * 109.47220 * 270.00314 * 3 2 1 5 5 H 1.08000 * 119.99867 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99654 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99479 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00446 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47303 * 89.99734 * 8 6 4 10 10 H 1.48496 * 109.47195 * 209.99762 * 8 6 4 11 11 H 1.48506 * 109.46900 * 330.00019 * 8 6 4 12 12 C 1.34775 * 119.99901 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99961 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00204 * 359.97438 * 12 2 1 15 15 N 1.46500 * 109.47157 * 179.97438 * 14 12 2 16 16 C 1.35402 * 124.77734 * 265.00035 * 15 14 12 17 17 C 1.36479 * 109.75972 * 180.02562 * 16 15 14 18 18 C 1.46740 * 126.77669 * 179.97438 * 17 16 15 19 19 O 1.21601 * 119.99911 * 179.97438 * 18 17 16 20 20 O 1.34847 * 120.00316 * 359.97438 * 18 17 16 21 21 C 1.47467 * 106.44206 * 359.74516 * 17 16 15 22 22 C 1.39260 * 134.00241 * 179.50050 * 21 17 16 23 23 C 1.37770 * 119.67231 * 180.47635 * 22 21 17 24 24 C 1.38751 * 120.29263 * 0.25915 * 23 22 21 25 25 C 1.37758 * 120.63751 * 359.97438 * 24 23 22 26 26 C 1.37982 * 124.77068 * 84.99950 * 15 14 12 27 27 H 1.09005 * 109.46608 * 269.99424 * 1 2 3 28 28 H 1.09000 * 109.47411 * 29.99506 * 1 2 3 29 29 H 1.09001 * 109.47250 * 150.00329 * 1 2 3 30 30 H 1.08996 * 109.47238 * 30.00410 * 3 2 1 31 31 H 1.08999 * 109.46977 * 150.00245 * 3 2 1 32 32 H 0.97009 * 119.99508 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.46867 * 59.99890 * 14 12 2 34 34 H 1.08996 * 109.47441 * 299.99880 * 14 12 2 35 35 H 1.07995 * 125.12240 * 0.02562 * 16 15 14 36 36 H 0.96698 * 116.99798 * 179.97438 * 20 18 17 37 37 H 1.08002 * 120.16619 * 0.75837 * 22 21 17 38 38 H 1.07994 * 119.85312 * 180.28154 * 23 22 21 39 39 H 1.08000 * 119.67456 * 180.02562 * 24 23 22 40 40 H 1.08001 * 120.03690 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.3454 3.2575 -2.9126 8 14 3.7329 3.9293 -0.2529 9 1 5.1064 3.5082 0.1230 10 1 3.7477 5.3560 -0.6643 11 1 2.8270 3.7591 0.9116 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3374 -3.5858 -0.0018 16 6 2.7648 -4.2353 -1.1103 17 6 3.6446 -5.2177 -0.7591 18 6 4.3326 -6.1456 -1.6641 19 8 5.0966 -6.9784 -1.2153 20 8 4.1176 -6.0748 -2.9934 21 6 3.7717 -5.1590 0.7089 22 6 4.4963 -5.8896 1.6473 23 6 4.3855 -5.5809 2.9854 24 6 3.5527 -4.5512 3.3995 25 6 2.8266 -3.8236 2.4823 26 6 2.9247 -4.1202 1.1267 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5138 32 1 3.8223 4.0835 -3.0898 33 1 0.7584 -2.5298 -0.8903 34 1 0.7591 -2.5303 0.8896 35 1 2.4559 -4.0100 -2.1203 36 1 4.5937 -6.7068 -3.5494 37 1 5.1454 -6.6913 1.3273 38 1 4.9495 -6.1426 3.7151 39 1 3.4737 -4.3175 4.4509 40 1 2.1811 -3.0245 2.8155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830723576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:49 Heat of formation + Delta-G solvation = -77.589570 kcal Electronic energy + Delta-G solvation = -25853.043154 eV Core-core repulsion = 22018.811371 eV Total energy + Delta-G solvation = -3834.231783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.72103 -40.82807 -40.41345 -38.07213 -36.90893 -36.69448 -34.79474 -34.08404 -31.66672 -30.60055 -30.19358 -28.53189 -27.28790 -25.06318 -24.31743 -23.64174 -22.36484 -21.20534 -20.24489 -19.18205 -19.00471 -18.46874 -18.19714 -17.44584 -17.24632 -16.59056 -16.53466 -16.46148 -16.32206 -15.80432 -15.35907 -14.96649 -14.84999 -14.60400 -14.24915 -14.15419 -13.96388 -13.69069 -13.63037 -13.27148 -13.21544 -12.78891 -12.64661 -12.59774 -12.51594 -12.47177 -12.07180 -12.04125 -11.76703 -11.56534 -11.03458 -10.85326 -10.60598 -9.46379 -9.28875 -8.82520 -8.36244 -6.41188 -0.09999 0.49657 0.79203 1.30634 1.35289 1.42139 1.45049 1.62646 2.10565 2.24689 2.28571 2.35980 2.92686 2.98986 3.49753 3.56311 3.59516 3.77932 4.03386 4.13832 4.17587 4.27274 4.42118 4.51474 4.60182 4.67355 4.72840 4.78314 4.82504 4.92822 5.01228 5.09665 5.41782 5.43284 5.52789 5.53640 5.59555 5.63907 5.69383 5.98825 6.13106 6.20003 6.58533 6.61285 7.09398 7.17479 7.30567 8.80356 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.003694 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.777407 B = 7578.726520 C = 8313.742101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.599 5.599 3 C 0.224 3.776 4 C -0.535 4.535 5 H 0.033 0.967 6 C 0.012 3.988 7 N -0.944 5.944 8 Si 0.943 3.057 9 H -0.282 1.282 10 H -0.276 1.276 11 H -0.235 1.235 12 C 0.478 3.522 13 O -0.584 6.584 14 C 0.094 3.906 15 N -0.449 5.449 16 C 0.167 3.833 17 C -0.267 4.267 18 C 0.563 3.437 19 O -0.560 6.560 20 O -0.508 6.508 21 C -0.086 4.086 22 C -0.097 4.097 23 C -0.134 4.134 24 C -0.102 4.102 25 C -0.123 4.123 26 C 0.080 3.920 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.268 0.732 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.210 0.790 36 H 0.431 0.569 37 H 0.121 0.879 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 -16.446 10.235 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.331 5.331 3 C 0.101 3.899 4 C -0.574 4.574 5 H 0.051 0.949 6 C -0.186 4.186 7 N -0.584 5.584 8 Si 0.767 3.233 9 H -0.208 1.208 10 H -0.201 1.201 11 H -0.157 1.157 12 C 0.265 3.735 13 O -0.464 6.464 14 C -0.030 4.030 15 N -0.128 5.128 16 C 0.033 3.967 17 C -0.276 4.276 18 C 0.410 3.590 19 O -0.454 6.454 20 O -0.322 6.322 21 C -0.089 4.089 22 C -0.115 4.115 23 C -0.152 4.152 24 C -0.121 4.121 25 C -0.143 4.143 26 C -0.023 4.023 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.227 0.773 36 H 0.292 0.708 37 H 0.139 0.861 38 H 0.169 0.831 39 H 0.177 0.823 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.877 -15.963 10.513 21.075 hybrid contribution 1.207 0.485 -0.769 1.511 sum -7.669 -15.479 9.744 19.833 Atomic orbital electron populations 1.22143 0.76809 1.04731 1.03616 1.47925 1.08762 1.05440 1.70932 1.19336 0.92701 0.82534 0.95283 1.21557 1.36730 1.06628 0.92480 0.94878 1.25814 0.95373 0.99055 0.98375 1.70043 1.42682 1.24489 1.21222 0.85780 0.79442 0.77918 0.80199 1.20777 1.20098 1.15746 1.21496 0.88174 0.86812 0.77049 1.90751 1.16411 1.87701 1.51510 1.22138 0.89996 0.80453 1.10444 1.43492 1.37256 1.27153 1.04932 1.22709 0.92039 0.89290 0.92690 1.19070 1.10886 1.05862 0.91743 1.19656 0.77749 0.80569 0.80989 1.90833 1.37783 1.38518 1.78238 1.84542 1.68482 1.61258 1.17942 1.18964 1.00032 0.98350 0.91558 1.20733 0.98667 0.99303 0.92817 1.21309 1.00105 0.98878 0.94911 1.21218 0.95597 0.94915 1.00392 1.20390 1.03336 1.02015 0.88603 1.18463 0.98100 0.96376 0.89360 0.89556 0.91384 0.88245 0.92826 0.96769 0.92321 0.82077 0.82375 0.77293 0.70771 0.86086 0.83093 0.82302 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 10.24 127.77 1.31 2.74 16 2 N -0.60 -20.72 2.86 -851.13 -2.43 -23.15 16 3 C 0.22 10.13 4.23 85.63 0.36 10.50 16 4 C -0.54 -30.04 9.94 25.60 0.25 -29.79 16 5 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 6 C 0.01 0.69 5.47 84.65 0.46 1.16 16 7 N -0.94 -58.53 13.96 21.45 0.30 -58.24 16 8 Si 0.94 43.37 27.47 68.60 1.88 45.26 16 9 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.23 -9.49 6.54 99.48 0.65 -8.84 16 12 C 0.48 16.55 7.74 87.66 0.68 17.23 16 13 O -0.58 -27.71 16.00 -3.05 -0.05 -27.76 16 14 C 0.09 1.92 4.99 85.63 0.43 2.35 16 15 N -0.45 -11.81 2.23 -519.30 -1.16 -12.97 16 16 C 0.17 4.39 11.04 83.73 0.92 5.32 16 17 C -0.27 -8.17 6.27 -19.03 -0.12 -8.29 16 18 C 0.56 16.59 8.31 70.04 0.58 17.17 16 19 O -0.56 -19.34 16.95 19.51 0.33 -19.01 16 20 O -0.51 -10.86 13.26 -57.60 -0.76 -11.63 16 21 C -0.09 -2.72 6.27 -20.08 -0.13 -2.85 16 22 C -0.10 -2.81 9.85 22.40 0.22 -2.58 16 23 C -0.13 -3.04 10.03 22.28 0.22 -2.82 16 24 C -0.10 -2.15 10.01 22.28 0.22 -1.93 16 25 C -0.12 -3.00 9.97 22.37 0.22 -2.77 16 26 C 0.08 2.30 6.78 38.91 0.26 2.57 16 27 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 29 H 0.10 1.29 6.44 -2.39 -0.02 1.27 16 30 H 0.05 2.20 7.13 -2.39 -0.02 2.19 16 31 H 0.01 0.71 6.85 -2.39 -0.02 0.69 16 32 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 33 H 0.16 2.08 7.37 -2.39 -0.02 2.06 16 34 H 0.16 1.95 8.11 -2.39 -0.02 1.94 16 35 H 0.21 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.43 5.02 9.11 -74.06 -0.67 4.34 16 37 H 0.12 3.59 7.45 -2.91 -0.02 3.57 16 38 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -89.66 351.87 4.38 -85.29 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.36 Total: 14.21 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.91 Total: 8.00 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -3.29 Total: -94.35 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -0.48 Total: -58.39 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.26 kcal Total: -89.66 4.38 -85.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830723576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.697 kcal (2) G-P(sol) polarization free energy of solvation -89.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds