Wall clock time and date at job start Tue Mar 31 2020 11:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46494 * 120.00359 * 2 1 4 4 C 1.39708 * 119.99648 * 179.72305 * 2 1 3 5 5 C 1.38685 * 120.00737 * 354.24496 * 4 2 1 6 6 C 1.39447 * 119.77603 * 179.97438 * 5 4 2 7 7 C 1.47859 * 120.11138 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99986 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00434 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00205 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47037 * 180.02562 * 10 9 7 12 12 H 1.07992 * 120.00120 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99716 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00493 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99898 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47163 * 89.99329 * 15 13 11 17 17 H 1.48500 * 109.47271 * 209.99775 * 15 13 11 18 18 H 1.48510 * 109.46979 * 329.99550 * 15 13 11 19 19 C 1.39623 * 119.78289 * 359.97438 * 6 5 4 20 20 C 1.37985 * 120.00005 * 0.02562 * 19 6 5 21 21 C 1.50699 * 119.87965 * 179.97438 * 20 19 6 22 22 F 1.39897 * 109.47234 * 0.02562 * 21 20 19 23 23 F 1.39901 * 109.46877 * 120.00043 * 21 20 19 24 24 F 1.39894 * 109.47193 * 240.00035 * 21 20 19 25 25 C 1.38241 * 120.23067 * 359.70012 * 20 19 6 26 26 H 1.09000 * 109.47539 * 270.27774 * 1 2 3 27 27 H 1.09000 * 109.47004 * 30.27248 * 1 2 3 28 28 H 1.09002 * 109.48050 * 150.27425 * 1 2 3 29 29 H 1.09001 * 109.47584 * 184.75134 * 3 2 1 30 30 H 1.09000 * 109.47285 * 304.75126 * 3 2 1 31 31 H 1.08999 * 109.47201 * 64.74668 * 3 2 1 32 32 H 1.08002 * 120.11054 * 359.95524 * 5 4 2 33 33 H 0.96996 * 119.99793 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.47420 * 299.99891 * 10 9 7 35 35 H 1.08994 * 109.47612 * 60.00120 * 10 9 7 36 36 H 0.97001 * 120.00224 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.99754 * 179.97438 * 19 6 5 38 38 H 1.08000 * 119.89410 * 180.29684 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1634 -1.2099 0.0058 5 6 1.4753 -2.4074 0.1321 6 6 2.1773 -3.6123 0.1368 7 6 1.4512 -4.8933 0.2715 8 8 0.2404 -4.8972 0.3788 9 7 2.1318 -6.0565 0.2763 10 6 1.4124 -7.3256 0.4104 11 6 2.3973 -8.4661 0.3878 12 1 3.4533 -8.2657 0.2835 13 6 1.9499 -9.7655 0.4991 14 7 0.6638 -10.0097 0.6255 15 14 3.1705 -11.1793 0.4704 16 1 3.6163 -11.4766 1.8553 17 1 2.5212 -12.3823 -0.1096 18 1 4.3446 -10.8029 -0.3575 19 6 3.5681 -3.6052 0.0139 20 6 4.2435 -2.4084 -0.1112 21 6 5.7447 -2.4039 -0.2431 22 9 6.2195 -3.7195 -0.2129 23 9 6.1044 -1.8064 -1.4559 24 9 6.3037 -1.6815 0.8165 25 6 3.5474 -1.2141 -0.1216 26 1 -0.3634 0.0050 1.0276 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3635 -0.8924 -0.5095 29 1 3.2661 1.0712 -0.0851 30 1 1.8719 1.8762 -0.8444 31 1 1.9995 1.8025 0.9294 32 1 0.3994 -2.4067 0.2267 33 1 3.0980 -6.0534 0.1910 34 1 0.8666 -7.3361 1.3538 35 1 0.7107 -7.4347 -0.4165 36 1 0.3491 -10.9239 0.7042 37 1 4.1152 -4.5363 0.0175 38 1 4.0811 -0.2809 -0.2246 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:07 Heat of formation + Delta-G solvation = -149.616151 kcal Electronic energy + Delta-G solvation = -26105.607060 eV Core-core repulsion = 21726.395230 eV Total energy + Delta-G solvation = -4379.211831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.23763 -47.73538 -47.71187 -40.25888 -38.53186 -36.43489 -34.32039 -32.48100 -32.07986 -30.55654 -28.85155 -27.23420 -25.88008 -25.15912 -23.84033 -21.99438 -21.30167 -19.76185 -18.78118 -18.57174 -18.42484 -16.91203 -16.64754 -16.14701 -15.81406 -15.56115 -15.40059 -15.03033 -14.62304 -14.49453 -14.43798 -14.33677 -14.13316 -13.87244 -13.85012 -13.73414 -13.20666 -12.94466 -12.84401 -12.78720 -12.46282 -12.23419 -12.04916 -11.82396 -11.78232 -11.27948 -10.99161 -10.89480 -10.32991 -10.24607 -9.42646 -9.30248 -9.25658 -8.75950 -7.95737 -7.61200 -6.17732 -4.24784 0.69155 1.10280 2.50746 2.81603 3.01475 3.25261 3.31465 3.34036 3.60750 3.83510 3.93586 4.04212 4.34498 4.35005 4.51171 4.77463 4.88590 4.97429 5.02007 5.10008 5.18819 5.19010 5.28057 5.34430 5.36771 5.49561 5.53488 5.87111 6.00846 6.22489 6.33388 6.88564 7.11177 7.25741 7.32936 7.47578 7.63471 7.93980 8.52977 8.72639 8.97598 9.41625 10.92430 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.003711 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.804004 B = 7543.263593 C = 9437.900993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.637 5.637 3 C 0.089 3.911 4 C 0.206 3.794 5 C -0.109 4.109 6 C -0.072 4.072 7 C 0.539 3.461 8 O -0.548 6.548 9 N -0.700 5.700 10 C 0.248 3.752 11 C -0.545 4.545 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.100 4.100 20 C -0.142 4.142 21 C 0.510 3.490 22 F -0.172 7.172 23 F -0.178 7.178 24 F -0.178 7.178 25 C -0.140 4.140 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.145 0.855 33 H 0.392 0.608 34 H 0.030 0.970 35 H 0.031 0.969 36 H 0.266 0.734 37 H 0.142 0.858 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.695 22.868 -1.972 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.349 5.349 3 C -0.054 4.054 4 C 0.104 3.896 5 C -0.133 4.133 6 C -0.076 4.076 7 C 0.324 3.676 8 O -0.428 6.428 9 N -0.348 5.348 10 C 0.128 3.872 11 C -0.583 4.583 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.121 4.121 20 C -0.144 4.144 21 C 0.456 3.544 22 F -0.154 7.154 23 F -0.159 7.159 24 F -0.159 7.159 25 C -0.163 4.163 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.226 0.774 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.616 22.826 -1.883 23.582 hybrid contribution 1.334 -0.770 -0.048 1.541 sum 6.949 22.056 -1.931 23.206 Atomic orbital electron populations 1.21690 0.78773 1.03057 1.01665 1.46259 1.05287 1.02649 1.80716 1.21721 0.97519 0.84823 1.01297 1.17479 0.90421 0.86189 0.95471 1.21023 1.01198 0.89448 1.01584 1.19996 0.92713 0.94445 1.00402 1.18102 0.87265 0.83651 0.78584 1.90738 1.13537 1.87425 1.51062 1.46464 1.10836 1.07172 1.70344 1.19195 0.92663 0.77486 0.97842 1.21216 0.93452 0.90877 1.52760 0.91768 1.24939 0.95450 0.98917 0.94601 1.69969 1.13170 1.20858 1.48268 0.86407 0.80841 0.81274 0.78372 1.20420 1.21003 1.19649 1.20995 0.93757 0.97321 1.00049 1.19493 0.90483 0.95578 1.08827 1.18255 0.88596 0.73732 0.73822 1.93199 1.89960 1.36059 1.96143 1.93210 1.93250 1.83859 1.45601 1.93208 1.87292 1.78156 1.57254 1.20390 0.92738 0.97245 1.05884 0.92984 0.91316 0.90798 0.90515 0.92347 0.92712 0.83693 0.77417 0.95155 0.95145 0.92409 0.84072 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.09 59.84 0.60 1.32 16 2 N -0.64 -5.96 3.41 -187.60 -0.64 -6.60 16 3 C 0.09 0.58 10.63 59.84 0.64 1.21 16 4 C 0.21 2.42 6.53 -83.83 -0.55 1.87 16 5 C -0.11 -1.54 8.70 -38.97 -0.34 -1.88 16 6 C -0.07 -1.14 5.87 -104.99 -0.62 -1.76 16 7 C 0.54 10.97 7.77 -12.32 -0.10 10.88 16 8 O -0.55 -12.99 16.34 5.32 0.09 -12.90 16 9 N -0.70 -14.88 5.50 -62.43 -0.34 -15.23 16 10 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 11 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 12 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 15 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C -0.10 -1.40 8.92 -39.16 -0.35 -1.75 16 20 C -0.14 -1.76 5.36 -104.71 -0.56 -2.32 16 21 C 0.51 6.03 3.31 36.01 0.12 6.15 16 22 F -0.17 -2.18 15.96 2.25 0.04 -2.15 16 23 F -0.18 -2.07 17.23 2.25 0.04 -2.03 16 24 F -0.18 -2.07 17.24 2.25 0.04 -2.03 16 25 C -0.14 -1.56 8.85 -39.30 -0.35 -1.90 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 28 H 0.07 0.64 6.45 -51.93 -0.34 0.30 16 29 H 0.08 0.46 5.31 -51.93 -0.28 0.18 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.15 2.04 5.90 -52.49 -0.31 1.73 16 33 H 0.39 7.24 6.35 -40.82 -0.26 6.98 16 34 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.14 1.88 5.48 -52.49 -0.29 1.60 16 38 H 0.14 1.19 5.73 -52.49 -0.30 0.89 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -31.70 335.94 -5.78 -37.48 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.83 Total: 2.74 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -1.94 Total: 5.00 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.25 Total: -46.97 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.11 Total: -6.21 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.70 -5.78 -37.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.136 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds