Wall clock time and date at job start Tue Mar 31 2020 11:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46494 * 120.00359 * 2 1 4 4 C 1.39708 * 119.99648 * 179.72305 * 2 1 3 5 5 C 1.38685 * 120.00737 * 354.24496 * 4 2 1 6 6 C 1.39447 * 119.77603 * 179.97438 * 5 4 2 7 7 C 1.47859 * 120.11138 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99986 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00434 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00205 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47037 * 180.02562 * 10 9 7 12 12 H 1.07992 * 120.00120 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99716 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00493 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99898 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47163 * 89.99329 * 15 13 11 17 17 H 1.48500 * 109.47271 * 209.99775 * 15 13 11 18 18 H 1.48510 * 109.46979 * 329.99550 * 15 13 11 19 19 C 1.39623 * 119.78289 * 359.97438 * 6 5 4 20 20 C 1.37985 * 120.00005 * 0.02562 * 19 6 5 21 21 C 1.50699 * 119.87965 * 179.97438 * 20 19 6 22 22 F 1.39897 * 109.47234 * 0.02562 * 21 20 19 23 23 F 1.39901 * 109.46877 * 120.00043 * 21 20 19 24 24 F 1.39894 * 109.47193 * 240.00035 * 21 20 19 25 25 C 1.38241 * 120.23067 * 359.70012 * 20 19 6 26 26 H 1.09000 * 109.47539 * 270.27774 * 1 2 3 27 27 H 1.09000 * 109.47004 * 30.27248 * 1 2 3 28 28 H 1.09002 * 109.48050 * 150.27425 * 1 2 3 29 29 H 1.09001 * 109.47584 * 184.75134 * 3 2 1 30 30 H 1.09000 * 109.47285 * 304.75126 * 3 2 1 31 31 H 1.08999 * 109.47201 * 64.74668 * 3 2 1 32 32 H 1.08002 * 120.11054 * 359.95524 * 5 4 2 33 33 H 0.96996 * 119.99793 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.47420 * 299.99891 * 10 9 7 35 35 H 1.08994 * 109.47612 * 60.00120 * 10 9 7 36 36 H 0.97001 * 120.00224 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.99754 * 179.97438 * 19 6 5 38 38 H 1.08000 * 119.89410 * 180.29684 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1634 -1.2099 0.0058 5 6 1.4753 -2.4074 0.1321 6 6 2.1773 -3.6123 0.1368 7 6 1.4512 -4.8933 0.2715 8 8 0.2404 -4.8972 0.3788 9 7 2.1318 -6.0565 0.2763 10 6 1.4124 -7.3256 0.4104 11 6 2.3973 -8.4661 0.3878 12 1 3.4533 -8.2657 0.2835 13 6 1.9499 -9.7655 0.4991 14 7 0.6638 -10.0097 0.6255 15 14 3.1705 -11.1793 0.4704 16 1 3.6163 -11.4766 1.8553 17 1 2.5212 -12.3823 -0.1096 18 1 4.3446 -10.8029 -0.3575 19 6 3.5681 -3.6052 0.0139 20 6 4.2435 -2.4084 -0.1112 21 6 5.7447 -2.4039 -0.2431 22 9 6.2195 -3.7195 -0.2129 23 9 6.1044 -1.8064 -1.4559 24 9 6.3037 -1.6815 0.8165 25 6 3.5474 -1.2141 -0.1216 26 1 -0.3634 0.0050 1.0276 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3635 -0.8924 -0.5095 29 1 3.2661 1.0712 -0.0851 30 1 1.8719 1.8762 -0.8444 31 1 1.9995 1.8025 0.9294 32 1 0.3994 -2.4067 0.2267 33 1 3.0980 -6.0534 0.1910 34 1 0.8666 -7.3361 1.3538 35 1 0.7107 -7.4347 -0.4165 36 1 0.3491 -10.9239 0.7042 37 1 4.1152 -4.5363 0.0175 38 1 4.0811 -0.2809 -0.2246 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:06 Heat of formation + Delta-G solvation = -169.798698 kcal Electronic energy + Delta-G solvation = -26106.482241 eV Core-core repulsion = 21726.395230 eV Total energy + Delta-G solvation = -4380.087011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.17442 -48.68712 -48.62892 -41.45058 -39.97565 -37.34516 -36.25325 -34.43756 -33.22108 -31.59738 -29.71569 -28.99598 -26.83718 -25.97810 -25.48033 -23.63667 -22.28257 -21.25325 -19.97270 -19.49724 -19.38131 -18.54298 -17.73941 -17.35961 -17.21008 -16.79989 -16.50274 -16.31805 -15.99353 -15.95246 -15.52763 -15.43256 -15.06507 -14.82811 -14.78164 -14.72183 -14.70844 -14.17981 -14.07501 -13.91114 -13.57771 -13.37487 -13.30010 -12.97401 -12.91856 -12.75841 -12.71741 -12.23946 -12.16503 -11.50107 -11.14024 -11.03521 -10.81583 -10.41087 -9.88731 -8.43290 -8.29474 -6.45970 -0.41421 0.04793 1.44119 1.46237 1.55969 1.57653 1.72259 2.03435 2.28191 2.47389 2.59726 2.65531 3.02973 3.05746 3.40798 3.55273 3.85559 3.91366 4.07180 4.14405 4.18282 4.36482 4.53827 4.56866 4.77172 4.84226 4.88870 4.90797 5.04259 5.06265 5.16076 5.21844 5.29656 5.42268 5.63827 5.82248 6.16028 6.28532 6.62362 6.77472 7.19116 7.33771 8.82675 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.003711 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.804004 B = 7543.263593 C = 9437.900993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.636 5.636 3 C 0.082 3.918 4 C 0.212 3.788 5 C -0.119 4.119 6 C -0.088 4.088 7 C 0.540 3.460 8 O -0.590 6.590 9 N -0.698 5.698 10 C 0.265 3.735 11 C -0.558 4.558 12 H 0.083 0.917 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.983 3.017 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.256 1.256 19 C -0.105 4.105 20 C -0.140 4.140 21 C 0.517 3.483 22 F -0.178 7.178 23 F -0.174 7.174 24 F -0.174 7.174 25 C -0.124 4.124 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.407 0.593 34 H -0.006 1.006 35 H -0.006 1.006 36 H 0.270 0.730 37 H 0.143 0.857 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.161 24.910 -2.325 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.346 5.346 3 C -0.060 4.060 4 C 0.108 3.892 5 C -0.142 4.142 6 C -0.092 4.092 7 C 0.327 3.673 8 O -0.473 6.473 9 N -0.347 5.347 10 C 0.143 3.857 11 C -0.596 4.596 12 H 0.101 0.899 13 C -0.193 4.193 14 N -0.567 5.567 15 Si 0.806 3.194 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.180 1.180 19 C -0.126 4.126 20 C -0.142 4.142 21 C 0.463 3.537 22 F -0.159 7.159 23 F -0.155 7.155 24 F -0.155 7.155 25 C -0.147 4.147 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.243 0.757 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.078 0.922 37 H 0.161 0.839 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.111 24.938 -2.242 26.319 hybrid contribution 0.506 -1.196 0.058 1.300 sum 8.616 23.742 -2.184 25.351 Atomic orbital electron populations 1.21818 0.78132 1.03716 1.02065 1.46569 1.05995 1.02738 1.79344 1.21980 0.97672 0.83523 1.02810 1.17482 0.90793 0.86376 0.94538 1.20986 1.00979 0.89919 1.02335 1.19494 0.93393 0.92396 1.03929 1.18775 0.86951 0.84789 0.76743 1.90699 1.15600 1.88217 1.52748 1.46179 1.11413 1.06094 1.70993 1.18650 0.92439 0.80094 0.94518 1.21595 0.94272 0.91183 1.52564 0.89915 1.26021 0.97416 1.02100 0.93757 1.70124 1.15614 1.21732 1.49252 0.85177 0.78336 0.77039 0.78813 1.19569 1.20833 1.18011 1.20926 0.92771 0.98332 1.00549 1.19538 0.90943 0.95346 1.08383 1.18068 0.88045 0.73576 0.73989 1.93192 1.89975 1.36572 1.96180 1.93222 1.93169 1.83738 1.45387 1.93220 1.87172 1.77999 1.57102 1.20728 0.92439 0.98024 1.03492 0.92757 0.88663 0.92145 0.89768 0.90516 0.91442 0.84538 0.75652 0.98800 0.98766 0.92163 0.83902 0.81604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.09 127.77 1.29 2.48 16 2 N -0.64 -10.21 3.41 -747.43 -2.55 -12.76 16 3 C 0.08 0.74 10.63 127.77 1.36 2.09 16 4 C 0.21 4.57 6.53 38.17 0.25 4.82 16 5 C -0.12 -3.34 8.70 22.67 0.20 -3.14 16 6 C -0.09 -2.87 5.87 -20.10 -0.12 -2.99 16 7 C 0.54 23.13 7.77 86.79 0.67 23.80 16 8 O -0.59 -29.87 16.34 -3.89 -0.06 -29.94 16 9 N -0.70 -30.99 5.50 -469.70 -2.58 -33.58 16 10 C 0.27 14.75 5.43 85.63 0.46 15.22 16 11 C -0.56 -30.70 9.28 25.60 0.24 -30.47 16 12 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 13 C 0.01 0.39 5.46 84.66 0.46 0.85 16 14 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 15 Si 0.98 42.61 29.54 68.60 2.03 44.63 16 16 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 19 C -0.10 -2.86 8.92 22.54 0.20 -2.66 16 20 C -0.14 -3.17 5.36 -19.92 -0.11 -3.28 16 21 C 0.52 10.95 3.31 71.24 0.24 11.19 16 22 F -0.18 -4.18 15.96 44.97 0.72 -3.46 16 23 F -0.17 -3.55 17.23 44.97 0.77 -2.77 16 24 F -0.17 -3.54 17.24 44.97 0.78 -2.76 16 25 C -0.12 -2.40 8.85 22.45 0.20 -2.20 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 0.83 8.07 -2.39 -0.02 0.81 16 28 H 0.06 1.02 6.45 -2.39 -0.02 1.01 16 29 H 0.08 0.63 5.31 -2.39 -0.01 0.62 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.14 4.01 5.90 -2.91 -0.02 4.00 16 33 H 0.41 15.35 6.35 -92.71 -0.59 14.76 16 34 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.14 3.75 5.48 -2.91 -0.02 3.73 16 38 H 0.17 2.17 5.73 -2.91 -0.02 2.16 16 Total: -1.00 -71.15 335.94 5.27 -65.87 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.55 Total: 14.75 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 5.34 Total: 15.73 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -4.85 Total: -102.04 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.06 Total: -29.94 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 2.27 Total: -9.00 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -71.15 5.27 -65.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.926 kcal (2) G-P(sol) polarization free energy of solvation -71.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds