Wall clock time and date at job start Tue Mar 31 2020 11:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34643 * 125.80252 * 2 1 4 4 C 1.37880 * 107.39853 * 180.26280 * 3 2 1 5 5 C 1.47660 * 126.37725 * 179.73671 * 4 3 2 6 6 C 1.37647 * 125.73286 * 180.02562 * 5 4 3 7 7 C 1.39710 * 106.98290 * 180.02562 * 6 5 4 8 8 C 1.37936 * 106.83123 * 359.97438 * 7 6 5 9 9 C 1.41831 * 125.87136 * 179.97438 * 8 7 6 10 10 O 1.21683 * 120.00047 * 354.60894 * 9 8 7 11 11 O 1.34972 * 119.99883 * 174.60703 * 9 8 7 12 12 C 1.42898 * 116.99566 * 185.69707 * 11 9 8 13 13 C 1.53001 * 109.46792 * 184.14951 * 12 11 9 14 14 C 1.50702 * 115.55218 * 56.89677 * 13 12 11 15 15 H 1.08000 * 119.99823 * 264.65288 * 14 13 12 16 16 C 1.37869 * 120.00082 * 84.65490 * 14 13 12 17 17 N 1.31522 * 120.00396 * 1.92972 * 16 14 13 18 18 Si 1.86804 * 120.00139 * 181.93199 * 16 14 13 19 19 H 1.48497 * 109.47306 * 89.99795 * 18 16 14 20 20 H 1.48494 * 109.47137 * 210.00061 * 18 16 14 21 21 H 1.48503 * 109.47043 * 329.99635 * 18 16 14 22 22 C 1.53001 * 117.49677 * 271.22449 * 13 12 11 23 23 C 1.53004 * 117.50097 * 202.56604 * 13 12 11 24 24 O 1.34325 * 125.73647 * 359.70069 * 5 4 3 25 25 C 1.41188 * 107.24156 * 359.58945 * 4 3 2 26 26 N 1.30530 * 108.09787 * 0.41795 * 25 4 3 27 27 H 1.08999 * 109.47179 * 89.99978 * 1 2 3 28 28 H 1.09005 * 109.46861 * 209.99996 * 1 2 3 29 29 H 1.09006 * 109.46851 * 329.99386 * 1 2 3 30 30 H 1.07995 * 126.30073 * 0.02562 * 3 2 1 31 31 H 1.08000 * 126.51091 * 359.97438 * 6 5 4 32 32 H 1.07995 * 126.58603 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47489 * 304.14515 * 12 11 9 34 34 H 1.08996 * 109.47447 * 64.15176 * 12 11 9 35 35 H 0.96993 * 120.00251 * 185.02045 * 17 16 14 36 36 H 1.08999 * 117.50169 * 0.02562 * 22 13 12 37 37 H 1.08999 * 117.49650 * 145.02008 * 22 13 12 38 38 H 1.08990 * 117.50157 * 214.97879 * 23 13 12 39 39 H 1.09005 * 117.49568 * 359.97438 * 23 13 12 40 40 H 1.07998 * 125.94348 * 180.15837 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2527 1.0920 0.0000 4 6 3.5610 0.6567 -0.0060 5 6 4.7673 1.5083 -0.0137 6 6 6.0683 1.0590 -0.0202 7 6 6.8901 2.1889 -0.0255 8 6 6.0574 3.2885 -0.0227 9 6 6.4718 4.6449 -0.0258 10 8 7.6534 4.9203 0.0676 11 8 5.5556 5.6302 -0.1323 12 6 6.0501 6.9653 -0.2549 13 6 4.8755 7.9457 -0.2593 14 6 3.9655 7.8754 0.9399 15 1 3.0642 7.2816 0.8997 16 6 4.2835 8.5690 2.0882 17 7 5.3610 9.3222 2.1244 18 14 3.1839 8.4389 3.5927 19 1 3.6414 7.3115 4.4442 20 1 3.2531 9.7039 4.3673 21 1 1.7831 8.1978 3.1627 22 6 4.2395 8.2800 -1.6101 23 6 5.1043 9.3196 -0.8927 24 8 4.7793 2.8514 -0.0217 25 6 3.5324 -0.7549 -0.0001 26 7 2.2837 -1.1351 -0.0001 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5140 30 1 1.9208 2.1197 0.0004 31 1 6.3924 0.0288 -0.0202 32 1 7.9700 2.1993 -0.0316 33 1 6.7063 7.1884 0.5864 34 1 6.6077 7.0622 -1.1863 35 1 5.6247 9.7520 2.9530 36 1 4.6576 7.8012 -2.4956 37 1 3.1630 8.4494 -1.6314 38 1 4.5965 10.1723 -0.4424 39 1 6.0919 9.5250 -1.3059 40 1 4.3937 -1.4064 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835187723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:34 Heat of formation + Delta-G solvation = 38.354594 kcal Electronic energy + Delta-G solvation = -25275.896561 eV Core-core repulsion = 21446.692494 eV Total energy + Delta-G solvation = -3829.204067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.55219 -41.35120 -39.65528 -36.83736 -35.35282 -33.99218 -32.91745 -31.93251 -31.65896 -29.38911 -27.50629 -26.47837 -25.26366 -23.60036 -22.36013 -21.26603 -21.02294 -20.62385 -20.04142 -19.28324 -18.15029 -17.35728 -16.68459 -16.47120 -15.81887 -15.75651 -15.32136 -15.19947 -14.73792 -14.57399 -13.93425 -13.49258 -13.26381 -13.21288 -13.15329 -12.98805 -12.94914 -12.32900 -12.27018 -12.18243 -11.61704 -11.22597 -10.97439 -10.84597 -10.56348 -10.34397 -10.24997 -10.15573 -9.87563 -9.82901 -9.66998 -9.50294 -8.91291 -8.42787 -8.16314 -7.83580 -6.03855 -4.09977 0.72169 1.51463 1.99708 2.03782 2.69303 2.95342 3.29927 3.32380 3.36696 3.38743 3.49983 4.03893 4.40843 4.53183 4.62322 4.75922 4.82571 4.89058 5.02887 5.15584 5.22210 5.24693 5.29171 5.43292 5.65603 5.77080 5.92887 5.99199 6.13709 6.24157 6.32863 6.35709 6.49827 6.50897 6.64865 6.74473 6.94571 7.05973 7.16793 7.26085 7.35280 7.50808 7.88463 8.31145 8.43848 8.91241 9.55636 11.05074 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003602 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.387345 B = 7771.184308 C = 8913.758679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.366 5.366 3 C 0.097 3.903 4 C -0.190 4.190 5 C 0.119 3.881 6 C -0.224 4.224 7 C -0.099 4.099 8 C -0.065 4.065 9 C 0.539 3.461 10 O -0.504 6.504 11 O -0.318 6.318 12 C 0.112 3.888 13 C 0.036 3.964 14 C -0.485 4.485 15 H 0.062 0.938 16 C 0.069 3.931 17 N -0.882 5.882 18 Si 0.890 3.110 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.208 4.208 23 C -0.140 4.140 24 O -0.138 6.138 25 C 0.088 3.912 26 N -0.297 5.297 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.190 0.810 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.342 -18.650 -5.163 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.145 5.145 3 C -0.052 4.052 4 C -0.201 4.201 5 C 0.064 3.936 6 C -0.243 4.243 7 C -0.118 4.118 8 C -0.115 4.115 9 C 0.385 3.615 10 O -0.396 6.396 11 O -0.232 6.232 12 C 0.038 3.962 13 C 0.035 3.965 14 C -0.523 4.523 15 H 0.080 0.920 16 C -0.134 4.134 17 N -0.519 5.519 18 Si 0.718 3.282 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.245 4.245 23 C -0.178 4.178 24 O -0.032 6.032 25 C -0.099 4.099 26 N -0.117 5.117 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.207 0.793 31 H 0.176 0.824 32 H 0.182 0.818 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.213 -19.122 -5.019 20.723 hybrid contribution 0.335 0.775 0.928 1.255 sum -5.879 -18.346 -4.091 19.695 Atomic orbital electron populations 1.22014 0.73255 1.05108 1.03976 1.48370 1.07225 1.03678 1.55201 1.23221 0.90293 0.94053 0.97654 1.17981 0.89167 0.91914 1.21073 1.20145 0.93372 0.79921 1.00195 1.21744 0.90554 1.00106 1.11899 1.22067 1.00921 0.89843 0.98994 1.20169 0.81421 0.92859 1.17091 1.18143 0.84514 0.84488 0.74376 1.90907 1.17756 1.83483 1.47470 1.86301 1.38087 1.17594 1.81246 1.22527 0.97628 0.76493 0.99579 1.18763 0.94314 0.91820 0.91559 1.20363 1.07185 1.28505 0.96210 0.91972 1.24996 0.95551 0.94163 0.98687 1.69983 1.24605 1.30768 1.26581 0.86613 0.81120 0.77436 0.83034 1.20616 1.21196 1.19788 1.23046 0.98564 1.06404 0.96483 1.22520 0.98239 0.94287 1.02750 1.84220 1.28680 1.20707 1.69623 1.23888 0.95300 0.92758 0.97962 1.77217 1.01487 1.08080 1.24939 0.90148 0.88891 0.88792 0.79305 0.82359 0.81798 0.90827 0.94279 0.92921 0.91573 0.90138 0.89212 0.91693 0.79007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.45 59.85 0.69 1.18 16 2 N -0.37 -3.45 3.99 -67.54 -0.27 -3.72 16 3 C 0.10 1.01 11.51 -16.45 -0.19 0.82 16 4 C -0.19 -2.18 6.12 -105.06 -0.64 -2.82 16 5 C 0.12 1.59 7.20 -35.95 -0.26 1.33 16 6 C -0.22 -2.63 10.62 -39.25 -0.42 -3.05 16 7 C -0.10 -1.39 10.56 -39.14 -0.41 -1.80 16 8 C -0.07 -1.15 6.99 -38.32 -0.27 -1.42 16 9 C 0.54 11.30 7.72 32.10 0.25 11.55 16 10 O -0.50 -11.20 16.48 -19.41 -0.32 -11.52 16 11 O -0.32 -7.40 9.87 -44.01 -0.43 -7.83 16 12 C 0.11 2.69 5.33 37.16 0.20 2.89 16 13 C 0.04 0.90 1.70 -155.66 -0.27 0.64 16 14 C -0.48 -13.34 8.61 -34.44 -0.30 -13.64 16 15 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.07 1.90 5.43 -17.82 -0.10 1.80 16 17 N -0.88 -25.08 12.73 55.43 0.71 -24.38 16 18 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.21 -4.56 9.94 -26.69 -0.27 -4.82 16 23 C -0.14 -3.29 9.26 -26.69 -0.25 -3.53 16 24 O -0.14 -2.32 10.68 0.01 0.00 -2.32 16 25 C 0.09 0.86 11.77 -16.99 -0.20 0.66 16 26 N -0.30 -3.21 12.51 30.85 0.39 -2.83 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16 33 H 0.07 1.94 7.96 -51.93 -0.41 1.52 16 34 H 0.04 0.87 8.10 -51.93 -0.42 0.44 16 35 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 38 H 0.09 2.22 8.14 -51.93 -0.42 1.80 16 39 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -33.54 362.77 -6.95 -40.49 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.03 Total: 0.59 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -2.43 Total: -10.22 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.82 Total: -30.92 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.75 Total: -21.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.54 -6.95 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835187723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.840 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds