Wall clock time and date at job start Tue Mar 31 2020 11:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34643 * 125.80252 * 2 1 4 4 C 1.37880 * 107.39853 * 180.26280 * 3 2 1 5 5 C 1.47660 * 126.37725 * 179.73671 * 4 3 2 6 6 C 1.37647 * 125.73286 * 180.02562 * 5 4 3 7 7 C 1.39710 * 106.98290 * 180.02562 * 6 5 4 8 8 C 1.37936 * 106.83123 * 359.97438 * 7 6 5 9 9 C 1.41831 * 125.87136 * 179.97438 * 8 7 6 10 10 O 1.21683 * 120.00047 * 354.60894 * 9 8 7 11 11 O 1.34972 * 119.99883 * 174.60703 * 9 8 7 12 12 C 1.42898 * 116.99566 * 185.69707 * 11 9 8 13 13 C 1.53001 * 109.46792 * 184.14951 * 12 11 9 14 14 C 1.50702 * 115.55218 * 56.89677 * 13 12 11 15 15 H 1.08000 * 119.99823 * 264.65288 * 14 13 12 16 16 C 1.37869 * 120.00082 * 84.65490 * 14 13 12 17 17 N 1.31522 * 120.00396 * 1.92972 * 16 14 13 18 18 Si 1.86804 * 120.00139 * 181.93199 * 16 14 13 19 19 H 1.48497 * 109.47306 * 89.99795 * 18 16 14 20 20 H 1.48494 * 109.47137 * 210.00061 * 18 16 14 21 21 H 1.48503 * 109.47043 * 329.99635 * 18 16 14 22 22 C 1.53001 * 117.49677 * 271.22449 * 13 12 11 23 23 C 1.53004 * 117.50097 * 202.56604 * 13 12 11 24 24 O 1.34325 * 125.73647 * 359.70069 * 5 4 3 25 25 C 1.41188 * 107.24156 * 359.58945 * 4 3 2 26 26 N 1.30530 * 108.09787 * 0.41795 * 25 4 3 27 27 H 1.08999 * 109.47179 * 89.99978 * 1 2 3 28 28 H 1.09005 * 109.46861 * 209.99996 * 1 2 3 29 29 H 1.09006 * 109.46851 * 329.99386 * 1 2 3 30 30 H 1.07995 * 126.30073 * 0.02562 * 3 2 1 31 31 H 1.08000 * 126.51091 * 359.97438 * 6 5 4 32 32 H 1.07995 * 126.58603 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47489 * 304.14515 * 12 11 9 34 34 H 1.08996 * 109.47447 * 64.15176 * 12 11 9 35 35 H 0.96993 * 120.00251 * 185.02045 * 17 16 14 36 36 H 1.08999 * 117.50169 * 0.02562 * 22 13 12 37 37 H 1.08999 * 117.49650 * 145.02008 * 22 13 12 38 38 H 1.08990 * 117.50157 * 214.97879 * 23 13 12 39 39 H 1.09005 * 117.49568 * 359.97438 * 23 13 12 40 40 H 1.07998 * 125.94348 * 180.15837 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2527 1.0920 0.0000 4 6 3.5610 0.6567 -0.0060 5 6 4.7673 1.5083 -0.0137 6 6 6.0683 1.0590 -0.0202 7 6 6.8901 2.1889 -0.0255 8 6 6.0574 3.2885 -0.0227 9 6 6.4718 4.6449 -0.0258 10 8 7.6534 4.9203 0.0676 11 8 5.5556 5.6302 -0.1323 12 6 6.0501 6.9653 -0.2549 13 6 4.8755 7.9457 -0.2593 14 6 3.9655 7.8754 0.9399 15 1 3.0642 7.2816 0.8997 16 6 4.2835 8.5690 2.0882 17 7 5.3610 9.3222 2.1244 18 14 3.1839 8.4389 3.5927 19 1 3.6414 7.3115 4.4442 20 1 3.2531 9.7039 4.3673 21 1 1.7831 8.1978 3.1627 22 6 4.2395 8.2800 -1.6101 23 6 5.1043 9.3196 -0.8927 24 8 4.7793 2.8514 -0.0217 25 6 3.5324 -0.7549 -0.0001 26 7 2.2837 -1.1351 -0.0001 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5140 30 1 1.9208 2.1197 0.0004 31 1 6.3924 0.0288 -0.0202 32 1 7.9700 2.1993 -0.0316 33 1 6.7063 7.1884 0.5864 34 1 6.6077 7.0622 -1.1863 35 1 5.6247 9.7520 2.9530 36 1 4.6576 7.8012 -2.4956 37 1 3.1630 8.4494 -1.6314 38 1 4.5965 10.1723 -0.4424 39 1 6.0919 9.5250 -1.3059 40 1 4.3937 -1.4064 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835187723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:33 Heat of formation + Delta-G solvation = 19.374107 kcal Electronic energy + Delta-G solvation = -25276.719617 eV Core-core repulsion = 21446.692494 eV Total energy + Delta-G solvation = -3830.027123 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.67713 -42.13338 -41.29969 -38.64803 -37.11099 -34.73592 -34.01972 -33.96648 -32.60196 -30.44736 -28.79129 -27.74572 -27.16681 -24.80373 -23.33373 -22.96522 -22.19297 -21.48596 -21.24176 -21.18106 -19.45403 -18.59808 -18.28832 -17.86089 -17.38265 -16.90361 -16.59228 -16.36215 -16.33511 -15.72227 -15.41968 -14.91432 -14.38201 -14.24590 -14.08749 -14.04066 -13.89741 -13.71109 -13.65295 -13.56272 -13.12022 -12.95449 -12.83682 -12.42992 -12.11084 -12.05804 -11.92089 -11.68488 -11.38819 -11.16117 -10.91421 -10.71467 -10.56007 -10.46052 -10.06407 -8.82209 -8.13444 -6.25130 -0.46068 0.62108 1.09414 1.32230 1.39101 1.40159 1.49736 1.58529 1.86828 2.05357 2.07376 2.41210 3.14352 3.29698 3.43371 3.76960 3.84100 3.85670 4.00267 4.14452 4.18895 4.36637 4.41221 4.43253 4.46307 4.53162 4.58794 4.64486 4.69423 4.77003 4.82819 4.96566 4.97917 5.18772 5.34915 5.38404 5.46043 5.54945 5.63853 5.73981 5.78218 5.87573 6.34626 6.51309 6.72239 6.79553 7.42927 8.94989 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003602 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.387345 B = 7771.184308 C = 8913.758679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.364 5.364 3 C 0.097 3.903 4 C -0.218 4.218 5 C 0.131 3.869 6 C -0.215 4.215 7 C -0.070 4.070 8 C -0.122 4.122 9 C 0.537 3.463 10 O -0.531 6.531 11 O -0.335 6.335 12 C 0.124 3.876 13 C 0.001 3.999 14 C -0.500 4.500 15 H 0.053 0.947 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 0.949 3.051 19 H -0.282 1.282 20 H -0.281 1.281 21 H -0.263 1.263 22 C -0.180 4.180 23 C -0.140 4.140 24 O -0.163 6.163 25 C 0.098 3.902 26 N -0.320 5.320 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.199 0.801 31 H 0.204 0.796 32 H 0.182 0.818 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.261 0.739 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.367 -21.215 -5.545 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.142 5.142 3 C -0.054 4.054 4 C -0.230 4.230 5 C 0.076 3.924 6 C -0.233 4.233 7 C -0.090 4.090 8 C -0.171 4.171 9 C 0.386 3.614 10 O -0.425 6.425 11 O -0.250 6.250 12 C 0.050 3.950 13 C 0.000 4.000 14 C -0.537 4.537 15 H 0.071 0.929 16 C -0.177 4.177 17 N -0.547 5.547 18 Si 0.774 3.226 19 H -0.208 1.208 20 H -0.206 1.206 21 H -0.187 1.187 22 C -0.217 4.217 23 C -0.177 4.177 24 O -0.059 6.059 25 C -0.088 4.088 26 N -0.140 5.140 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.216 0.784 31 H 0.221 0.779 32 H 0.199 0.801 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -7.270 -21.708 -5.412 23.524 hybrid contribution 0.520 1.374 1.014 1.784 sum -6.750 -20.335 -4.399 21.873 Atomic orbital electron populations 1.22375 0.71070 1.06479 1.05334 1.48741 1.08520 1.03033 1.53900 1.23494 0.90521 0.94827 0.96603 1.18155 0.88922 0.92603 1.23354 1.20760 0.95014 0.78919 0.97677 1.22222 0.89110 1.01392 1.10624 1.22461 1.01722 0.89378 0.95410 1.19854 0.82655 0.91881 1.22711 1.18584 0.84061 0.85249 0.73512 1.90865 1.18372 1.84040 1.49268 1.86287 1.39152 1.17557 1.82052 1.22199 0.96779 0.77282 0.98776 1.18884 0.95252 0.93168 0.92678 1.20601 1.07298 1.28202 0.97628 0.92910 1.25700 0.96792 0.93959 1.01281 1.70086 1.26000 1.31540 1.27120 0.85693 0.79856 0.77334 0.79695 1.20764 1.20632 1.18748 1.23056 0.98690 1.04315 0.95660 1.22438 0.99182 0.93196 1.02912 1.84170 1.28503 1.22520 1.70683 1.24399 0.95974 0.92220 0.96243 1.77203 1.02097 1.08919 1.25821 0.88770 0.88024 0.87008 0.78434 0.77909 0.80097 0.94301 0.92735 0.93021 0.89013 0.89693 0.91098 0.90309 0.75809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 11.45 127.77 1.46 2.16 16 2 N -0.36 -6.09 3.99 -367.60 -1.47 -7.56 16 3 C 0.10 1.85 11.51 84.18 0.97 2.82 16 4 C -0.22 -4.56 6.12 -20.15 -0.12 -4.68 16 5 C 0.13 3.29 7.20 24.62 0.18 3.46 16 6 C -0.21 -4.39 10.62 22.49 0.24 -4.16 16 7 C -0.07 -1.86 10.56 22.55 0.24 -1.62 16 8 C -0.12 -4.34 6.99 23.09 0.16 -4.18 16 9 C 0.54 23.37 7.72 68.71 0.53 23.90 16 10 O -0.53 -24.51 16.48 19.24 0.32 -24.20 16 11 O -0.34 -16.22 9.87 -56.25 -0.56 -16.77 16 12 C 0.12 6.18 5.33 71.98 0.38 6.56 16 13 C 0.00 0.03 1.70 -52.93 -0.09 -0.06 16 14 C -0.50 -28.09 8.61 25.60 0.22 -27.87 16 15 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 16 C 0.02 1.27 5.43 84.65 0.46 1.73 16 17 N -0.91 -53.02 12.73 21.45 0.27 -52.74 16 18 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 22 C -0.18 -7.77 9.94 30.62 0.30 -7.47 16 23 C -0.14 -6.58 9.26 30.62 0.28 -6.30 16 24 O -0.16 -5.48 10.68 -7.05 -0.08 -5.56 16 25 C 0.10 1.63 11.77 85.61 1.01 2.64 16 26 N -0.32 -6.14 12.51 -56.30 -0.70 -6.85 16 27 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.20 3.27 8.06 -2.91 -0.02 3.24 16 31 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 32 H 0.18 4.07 8.06 -2.91 -0.02 4.04 16 33 H 0.04 2.16 7.96 -2.39 -0.02 2.14 16 34 H 0.05 2.47 8.10 -2.39 -0.02 2.45 16 35 H 0.26 14.54 8.32 -92.71 -0.77 13.76 16 36 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.07 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.08 3.43 8.14 -2.38 -0.02 3.41 16 40 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -74.83 362.77 7.10 -67.74 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.06 Total: 12.72 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 6.22 Total: -13.07 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -1.90 Total: -67.15 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.31 Total: -46.52 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -74.83 7.10 -67.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835187723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.110 kcal (2) G-P(sol) polarization free energy of solvation -74.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds