Wall clock time and date at job start Tue Mar 31 2020 11:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34943 * 126.03733 * 2 1 4 4 C 1.35321 * 107.74390 * 180.14792 * 3 2 1 5 5 C 1.50702 * 126.03687 * 179.86933 * 4 3 2 6 6 C 1.52992 * 109.47270 * 269.71252 * 5 4 3 7 7 C 1.50707 * 109.47131 * 180.02562 * 6 5 4 8 8 O 1.20830 * 119.99700 * 0.02562 * 7 6 5 9 9 O 1.34261 * 120.00053 * 179.97438 * 7 6 5 10 10 C 1.35927 * 116.99955 * 175.01134 * 9 7 6 11 11 C 1.38830 * 120.01872 * 255.02551 * 10 9 7 12 12 C 1.38192 * 120.07719 * 179.72111 * 11 10 9 13 13 C 1.38160 * 120.12307 * 0.55067 * 12 11 10 14 14 C 1.38897 * 120.03939 * 359.72542 * 13 12 11 15 15 O 1.35753 * 120.03929 * 179.97438 * 14 13 12 16 16 C 1.34821 * 116.99969 * 185.61640 * 15 14 13 17 17 H 1.08003 * 120.00598 * 354.94157 * 16 15 14 18 18 C 1.38657 * 120.00044 * 174.94114 * 16 15 14 19 19 N 1.31557 * 119.99736 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00276 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47386 * 59.99593 * 20 18 16 22 22 H 1.48497 * 109.47195 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.46787 * 299.99954 * 20 18 16 24 24 C 1.38565 * 120.01805 * 75.29630 * 10 9 7 25 25 C 1.39865 * 107.92202 * 359.60832 * 4 3 2 26 26 N 1.30842 * 108.19979 * 0.24449 * 25 4 3 27 27 H 1.09002 * 109.47049 * 270.26717 * 1 2 3 28 28 H 1.09002 * 109.46878 * 30.26184 * 1 2 3 29 29 H 1.08998 * 109.47353 * 150.26259 * 1 2 3 30 30 H 1.08001 * 126.13134 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.46580 * 149.71499 * 5 4 3 32 32 H 1.08999 * 109.47396 * 29.72011 * 5 4 3 33 33 H 1.08995 * 109.47201 * 60.00648 * 6 5 4 34 34 H 1.09002 * 109.47378 * 300.00169 * 6 5 4 35 35 H 1.07992 * 119.96113 * 359.97438 * 11 10 9 36 36 H 1.07996 * 119.93553 * 180.27335 * 12 11 10 37 37 H 1.07992 * 119.97921 * 179.69799 * 13 12 11 38 38 H 0.96998 * 119.99988 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.06702 * 359.97438 * 24 10 9 40 40 H 1.07999 * 125.90294 * 180.26541 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0073 6 6 5.1825 1.8358 -1.4511 7 6 6.4072 2.7141 -1.4550 8 8 6.8983 3.0705 -0.4102 9 8 6.9531 3.0995 -2.6195 10 6 7.9915 3.9742 -2.5547 11 6 7.7978 5.3082 -2.8865 12 6 8.8513 6.1997 -2.8155 13 6 10.1030 5.7642 -2.4250 14 6 10.3038 4.4294 -2.0974 15 8 11.5338 4.0014 -1.7143 16 6 11.6884 2.6758 -1.5229 17 1 10.8359 2.0167 -1.5949 18 6 12.9420 2.1587 -1.2337 19 7 13.9806 2.9614 -1.1466 20 14 13.1565 0.3219 -0.9693 21 1 12.7420 -0.4064 -2.1952 22 1 14.5820 0.0272 -0.6758 23 1 12.3156 -0.1150 0.1742 24 6 9.2455 3.5337 -2.1626 25 6 3.5347 -0.7322 0.0037 26 7 2.2891 -1.1328 0.0056 27 1 -0.3633 0.0048 1.0277 28 1 -0.3633 0.8877 -0.5179 29 1 -0.3634 -0.8923 -0.5097 30 1 1.9282 2.1193 -0.0004 31 1 5.5821 1.0364 0.5090 32 1 4.5442 2.4825 0.5022 33 1 4.3685 2.3446 -1.9674 34 1 5.4064 0.8985 -1.9605 35 1 6.8216 5.6506 -3.1967 36 1 8.6969 7.2379 -3.0699 37 1 10.9258 6.4618 -2.3750 38 1 14.8575 2.5997 -0.9439 39 1 9.3990 2.4955 -1.9079 40 1 4.4054 -1.3711 0.0072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:40 Heat of formation + Delta-G solvation = 0.556740 kcal Electronic energy + Delta-G solvation = -24683.425451 eV Core-core repulsion = 20852.582346 eV Total energy + Delta-G solvation = -3830.843105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49105 -40.83446 -38.80640 -37.17052 -35.71092 -34.60282 -32.88539 -32.29436 -30.18428 -29.47399 -28.87730 -27.30988 -25.45861 -24.70850 -22.43724 -21.62456 -21.37922 -20.52099 -20.08913 -18.27603 -17.89326 -17.24324 -16.68082 -16.19823 -15.93548 -15.65348 -15.13933 -14.83241 -14.61413 -14.32134 -13.86053 -13.77402 -13.60123 -13.44782 -13.17247 -13.05667 -12.90528 -12.60658 -12.46488 -12.11270 -11.86161 -11.49699 -11.33175 -11.28031 -11.04455 -10.82692 -10.74281 -10.50362 -10.32322 -10.26172 -9.70612 -9.51827 -8.86043 -8.66237 -8.14282 -7.34191 -6.46989 -4.06323 1.58272 1.79976 2.21883 2.23166 2.39161 2.50840 3.13190 3.14101 3.17691 3.21869 3.96118 4.19138 4.47518 4.53010 4.72824 4.78170 4.81086 4.90979 4.98799 5.04548 5.06221 5.19912 5.32074 5.35416 5.47808 5.58512 5.61495 5.79291 5.98834 6.01510 6.04875 6.17608 6.35250 6.38975 6.57312 6.69734 6.92624 7.02265 7.10333 7.15033 7.34401 7.41201 7.61532 7.96612 8.20105 8.98017 9.64297 10.70418 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013948 B = 0.002837 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.043168 B = 9867.708702 C =11610.887289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.380 5.380 3 C 0.058 3.942 4 C -0.234 4.234 5 C -0.030 4.030 6 C -0.103 4.103 7 C 0.451 3.549 8 O -0.484 6.484 9 O -0.299 6.299 10 C 0.121 3.879 11 C -0.213 4.213 12 C -0.065 4.065 13 C -0.188 4.188 14 C 0.163 3.837 15 O -0.170 6.170 16 C -0.393 4.393 17 H 0.091 0.909 18 C 0.042 3.958 19 N -0.860 5.860 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.230 4.230 25 C 0.056 3.944 26 N -0.300 5.300 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.174 0.826 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.271 0.729 39 H 0.132 0.868 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.311 -3.085 -0.106 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.162 5.162 3 C -0.088 4.088 4 C -0.246 4.246 5 C -0.069 4.069 6 C -0.141 4.141 7 C 0.293 3.707 8 O -0.369 6.369 9 O -0.214 6.214 10 C 0.081 3.919 11 C -0.233 4.233 12 C -0.084 4.084 13 C -0.207 4.207 14 C 0.109 3.891 15 O -0.073 6.073 16 C -0.469 4.469 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.495 5.495 20 Si 0.765 3.235 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.250 4.250 25 C -0.130 4.130 26 N -0.121 5.121 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.192 0.808 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.081 0.919 39 H 0.149 0.851 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -24.620 -3.898 0.331 24.929 hybrid contribution 0.612 -0.225 0.125 0.663 sum -24.008 -4.123 0.456 24.364 Atomic orbital electron populations 1.21848 0.74255 1.04496 1.03342 1.48472 1.06642 1.03931 1.57120 1.22382 0.90873 0.93424 1.02091 1.20020 0.94229 0.93980 1.16327 1.19677 0.94132 0.98952 0.94090 1.21406 0.92987 0.99532 1.00164 1.24120 0.85085 0.79534 0.81911 1.90731 1.60796 1.52772 1.32602 1.84514 1.45160 1.57165 1.34588 1.18217 0.84954 0.87961 1.00817 1.20488 0.99748 0.91272 1.11769 1.20483 0.91698 0.98267 0.97914 1.20323 0.97919 0.94046 1.08421 1.19130 0.85942 0.92545 0.91485 1.83994 1.24157 1.26268 1.72885 1.21273 0.95589 0.79908 1.50132 0.89201 1.25289 0.94101 1.00487 0.96439 1.70025 0.99795 1.35415 1.44228 0.85782 0.77975 0.80440 0.79306 1.19388 1.20162 1.19365 1.21200 0.92323 1.01534 1.09907 1.23896 0.95221 0.94657 0.99246 1.77375 1.01776 1.08244 1.24676 0.90810 0.89451 0.89316 0.80843 0.89830 0.90318 0.87910 0.87612 0.86815 0.86038 0.85912 0.91863 0.85052 0.79821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 11.47 59.85 0.69 1.14 16 2 N -0.38 -3.32 4.01 -68.16 -0.27 -3.59 16 3 C 0.06 0.47 11.40 -17.22 -0.20 0.28 16 4 C -0.23 -2.22 5.35 -105.05 -0.56 -2.78 16 5 C -0.03 -0.30 4.99 -27.89 -0.14 -0.44 16 6 C -0.10 -1.07 5.79 -27.88 -0.16 -1.24 16 7 C 0.45 7.17 7.82 36.01 0.28 7.45 16 8 O -0.48 -9.46 15.41 -18.75 -0.29 -9.74 16 9 O -0.30 -5.32 10.03 -23.62 -0.24 -5.55 16 10 C 0.12 2.48 5.19 -39.24 -0.20 2.28 16 11 C -0.21 -3.93 9.99 -39.38 -0.39 -4.32 16 12 C -0.07 -1.18 10.03 -39.63 -0.40 -1.58 16 13 C -0.19 -4.00 9.99 -39.37 -0.39 -4.39 16 14 C 0.16 4.08 6.65 -39.13 -0.26 3.82 16 15 O -0.17 -4.93 9.76 0.06 0.00 -4.93 16 16 C -0.39 -11.23 9.49 30.89 0.29 -10.93 16 17 H 0.09 2.42 5.20 -52.48 -0.27 2.15 16 18 C 0.04 1.16 5.49 -17.51 -0.10 1.06 16 19 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 20 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 C -0.23 -5.39 8.58 -39.25 -0.34 -5.73 16 25 C 0.06 0.57 11.96 -17.36 -0.21 0.36 16 26 N -0.30 -3.36 12.58 30.62 0.39 -2.98 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.13 3.16 5.64 -52.49 -0.30 2.87 16 40 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -35.77 356.87 -6.16 -41.93 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.77 Total: 3.27 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.09 Total: -15.02 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.87 Total: -31.14 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.53 Total: -20.23 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.77 -6.16 -41.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.488 kcal (2) G-P(sol) polarization free energy of solvation -35.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds