Wall clock time and date at job start Tue Mar 31 2020 11:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34943 * 126.03733 * 2 1 4 4 C 1.35321 * 107.74390 * 180.14792 * 3 2 1 5 5 C 1.50702 * 126.03687 * 179.86933 * 4 3 2 6 6 C 1.52992 * 109.47270 * 269.71252 * 5 4 3 7 7 C 1.50707 * 109.47131 * 180.02562 * 6 5 4 8 8 O 1.20830 * 119.99700 * 0.02562 * 7 6 5 9 9 O 1.34261 * 120.00053 * 179.97438 * 7 6 5 10 10 C 1.35927 * 116.99955 * 175.01134 * 9 7 6 11 11 C 1.38830 * 120.01872 * 255.02551 * 10 9 7 12 12 C 1.38192 * 120.07719 * 179.72111 * 11 10 9 13 13 C 1.38160 * 120.12307 * 0.55067 * 12 11 10 14 14 C 1.38897 * 120.03939 * 359.72542 * 13 12 11 15 15 O 1.35753 * 120.03929 * 179.97438 * 14 13 12 16 16 C 1.34821 * 116.99969 * 185.61640 * 15 14 13 17 17 H 1.08003 * 120.00598 * 354.94157 * 16 15 14 18 18 C 1.38657 * 120.00044 * 174.94114 * 16 15 14 19 19 N 1.31557 * 119.99736 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00276 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47386 * 59.99593 * 20 18 16 22 22 H 1.48497 * 109.47195 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.46787 * 299.99954 * 20 18 16 24 24 C 1.38565 * 120.01805 * 75.29630 * 10 9 7 25 25 C 1.39865 * 107.92202 * 359.60832 * 4 3 2 26 26 N 1.30842 * 108.19979 * 0.24449 * 25 4 3 27 27 H 1.09002 * 109.47049 * 270.26717 * 1 2 3 28 28 H 1.09002 * 109.46878 * 30.26184 * 1 2 3 29 29 H 1.08998 * 109.47353 * 150.26259 * 1 2 3 30 30 H 1.08001 * 126.13134 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.46580 * 149.71499 * 5 4 3 32 32 H 1.08999 * 109.47396 * 29.72011 * 5 4 3 33 33 H 1.08995 * 109.47201 * 60.00648 * 6 5 4 34 34 H 1.09002 * 109.47378 * 300.00169 * 6 5 4 35 35 H 1.07992 * 119.96113 * 359.97438 * 11 10 9 36 36 H 1.07996 * 119.93553 * 180.27335 * 12 11 10 37 37 H 1.07992 * 119.97921 * 179.69799 * 13 12 11 38 38 H 0.96998 * 119.99988 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.06702 * 359.97438 * 24 10 9 40 40 H 1.07999 * 125.90294 * 180.26541 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0073 6 6 5.1825 1.8358 -1.4511 7 6 6.4072 2.7141 -1.4550 8 8 6.8983 3.0705 -0.4102 9 8 6.9531 3.0995 -2.6195 10 6 7.9915 3.9742 -2.5547 11 6 7.7978 5.3082 -2.8865 12 6 8.8513 6.1997 -2.8155 13 6 10.1030 5.7642 -2.4250 14 6 10.3038 4.4294 -2.0974 15 8 11.5338 4.0014 -1.7143 16 6 11.6884 2.6758 -1.5229 17 1 10.8359 2.0167 -1.5949 18 6 12.9420 2.1587 -1.2337 19 7 13.9806 2.9614 -1.1466 20 14 13.1565 0.3219 -0.9693 21 1 12.7420 -0.4064 -2.1952 22 1 14.5820 0.0272 -0.6758 23 1 12.3156 -0.1150 0.1742 24 6 9.2455 3.5337 -2.1626 25 6 3.5347 -0.7322 0.0037 26 7 2.2891 -1.1328 0.0056 27 1 -0.3633 0.0048 1.0277 28 1 -0.3633 0.8877 -0.5179 29 1 -0.3634 -0.8923 -0.5097 30 1 1.9282 2.1193 -0.0004 31 1 5.5821 1.0364 0.5090 32 1 4.5442 2.4825 0.5022 33 1 4.3685 2.3446 -1.9674 34 1 5.4064 0.8985 -1.9605 35 1 6.8216 5.6506 -3.1967 36 1 8.6969 7.2379 -3.0699 37 1 10.9258 6.4618 -2.3750 38 1 14.8575 2.5997 -0.9439 39 1 9.3990 2.4955 -1.9079 40 1 4.4054 -1.3711 0.0072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:39 Heat of formation + Delta-G solvation = -21.665761 kcal Electronic energy + Delta-G solvation = -24684.389091 eV Core-core repulsion = 20852.582346 eV Total energy + Delta-G solvation = -3831.806745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.35752 -42.05831 -40.56349 -38.72280 -37.33988 -35.39637 -34.33785 -33.55618 -31.52181 -30.75895 -30.34109 -27.97914 -27.41983 -25.71933 -23.81519 -23.28613 -22.00611 -21.80112 -20.91778 -20.10180 -19.51369 -18.45438 -17.70917 -17.45451 -17.38407 -16.86246 -16.29048 -16.21223 -16.05309 -15.61275 -15.35850 -15.07985 -14.93264 -14.60512 -14.35803 -14.02117 -13.74904 -13.67509 -13.58494 -13.20554 -13.02675 -12.99653 -12.88200 -12.74211 -12.47840 -12.19246 -12.12239 -11.87309 -11.75405 -11.47271 -11.40328 -10.85011 -10.35822 -9.79288 -9.32430 -9.14195 -8.52564 -6.21899 0.17529 0.56352 0.96467 1.12350 1.31129 1.41424 1.47387 1.64678 1.74322 1.97856 2.13876 2.74627 3.06536 3.39038 3.58623 3.73769 3.99072 4.00801 4.13365 4.18256 4.21675 4.33314 4.37334 4.46575 4.47594 4.55857 4.63963 4.72812 4.75335 4.86144 4.92203 4.97389 5.02425 5.20213 5.30015 5.39602 5.46228 5.53420 5.58164 5.69843 5.94425 6.02996 6.17006 6.74397 6.80664 6.91116 7.66696 8.69551 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013948 B = 0.002837 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.043168 B = 9867.708702 C =11610.887289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.382 5.382 3 C 0.070 3.930 4 C -0.250 4.250 5 C -0.020 4.020 6 C -0.090 4.090 7 C 0.450 3.550 8 O -0.526 6.526 9 O -0.297 6.297 10 C 0.114 3.886 11 C -0.192 4.192 12 C -0.048 4.048 13 C -0.197 4.197 14 C 0.125 3.875 15 O -0.221 6.221 16 C -0.418 4.418 17 H 0.091 0.909 18 C -0.016 4.016 19 N -0.913 5.913 20 Si 1.014 2.986 21 H -0.256 1.256 22 H -0.264 1.264 23 H -0.261 1.261 24 C -0.250 4.250 25 C 0.043 3.957 26 N -0.338 5.338 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.088 0.912 30 H 0.210 0.790 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.129 0.871 38 H 0.275 0.725 39 H 0.110 0.890 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.052 -2.341 -1.099 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.077 4.077 4 C -0.262 4.262 5 C -0.059 4.059 6 C -0.127 4.127 7 C 0.296 3.704 8 O -0.413 6.413 9 O -0.213 6.213 10 C 0.073 3.927 11 C -0.210 4.210 12 C -0.066 4.066 13 C -0.216 4.216 14 C 0.074 3.926 15 O -0.127 6.127 16 C -0.494 4.494 17 H 0.109 0.891 18 C -0.215 4.215 19 N -0.551 5.551 20 Si 0.833 3.167 21 H -0.180 1.180 22 H -0.189 1.189 23 H -0.186 1.186 24 C -0.269 4.269 25 C -0.142 4.142 26 N -0.160 5.160 27 H 0.102 0.898 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.226 0.774 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.139 0.861 35 H 0.177 0.823 36 H 0.193 0.807 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.128 0.872 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -28.435 -3.148 -0.685 28.617 hybrid contribution 1.405 -0.264 0.362 1.475 sum -27.029 -3.412 -0.323 27.246 Atomic orbital electron populations 1.22194 0.72045 1.05999 1.04505 1.48837 1.07982 1.03467 1.56079 1.22910 0.90263 0.94676 0.99877 1.19950 0.94572 0.93480 1.18176 1.19525 0.93941 0.98831 0.93615 1.21590 0.90980 0.99101 1.01001 1.25271 0.85596 0.78918 0.80618 1.90727 1.62219 1.54490 1.33821 1.84549 1.44077 1.56926 1.35699 1.18428 0.84632 0.89507 1.00112 1.21107 1.01734 0.89918 1.08272 1.21084 0.89657 1.00763 0.95063 1.20703 1.00009 0.92646 1.08228 1.19735 0.85397 0.94441 0.92982 1.83951 1.26428 1.26430 1.75936 1.21657 0.96276 0.80436 1.51055 0.89121 1.26542 0.93315 1.05875 0.95753 1.70151 1.00440 1.37870 1.46605 0.84720 0.78503 0.73732 0.79729 1.18043 1.18852 1.18558 1.21191 0.93776 1.00550 1.11426 1.24146 0.95415 0.95432 0.99186 1.77318 1.02449 1.10034 1.26213 0.89815 0.86455 0.89363 0.77383 0.91764 0.90339 0.84509 0.86133 0.82318 0.80694 0.85264 0.91545 0.87226 0.79156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 11.47 127.77 1.47 2.03 16 2 N -0.38 -5.77 4.01 -369.56 -1.48 -7.26 16 3 C 0.07 0.91 11.40 83.54 0.95 1.86 16 4 C -0.25 -4.27 5.35 -20.14 -0.11 -4.38 16 5 C -0.02 -0.38 4.99 29.85 0.15 -0.23 16 6 C -0.09 -1.64 5.79 29.85 0.17 -1.46 16 7 C 0.45 13.70 7.82 71.24 0.56 14.26 16 8 O -0.53 -20.50 15.41 21.95 0.34 -20.16 16 9 O -0.30 -10.04 10.03 4.53 0.05 -9.99 16 10 C 0.11 4.54 5.19 22.49 0.12 4.66 16 11 C -0.19 -6.29 9.99 22.40 0.22 -6.06 16 12 C -0.05 -1.55 10.03 22.24 0.22 -1.33 16 13 C -0.20 -8.32 9.99 22.41 0.22 -8.09 16 14 C 0.13 6.53 6.65 22.56 0.15 6.68 16 15 O -0.22 -13.72 9.76 -22.69 -0.22 -13.94 16 16 C -0.42 -25.46 9.49 67.92 0.64 -24.81 16 17 H 0.09 5.25 5.20 -2.91 -0.02 5.24 16 18 C -0.02 -0.96 5.49 84.83 0.47 -0.49 16 19 N -0.91 -56.66 13.67 21.61 0.30 -56.37 16 20 Si 1.01 44.26 29.55 68.60 2.03 46.28 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 23 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 24 C -0.25 -12.10 8.58 22.48 0.19 -11.91 16 25 C 0.04 0.85 11.96 85.23 1.02 1.87 16 26 N -0.34 -7.26 12.58 -57.02 -0.72 -7.98 16 27 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 31 H 0.06 1.43 8.10 -2.38 -0.02 1.42 16 32 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.13 5.19 8.06 -2.91 -0.02 5.16 16 38 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.11 5.66 5.64 -2.91 -0.02 5.64 16 40 H 0.19 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -84.84 356.87 7.80 -77.04 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 1.07 Total: 19.78 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 6.45 Total: -27.40 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.90 Total: -71.60 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: 0.16 Total: -44.10 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -84.84 7.80 -77.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.370 kcal (2) G-P(sol) polarization free energy of solvation -84.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds