Wall clock time and date at job start Tue Mar 31 2020 11:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46626 * 2 1 4 4 C 1.34953 * 126.03745 * 124.99859 * 3 2 1 5 5 C 1.35308 * 107.74678 * 180.02562 * 4 3 2 6 6 C 1.50707 * 126.03917 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.46871 * 90.00208 * 6 5 4 8 8 O 1.20822 * 120.00198 * 359.97438 * 7 6 5 9 9 O 1.34268 * 119.99443 * 179.97438 * 7 6 5 10 10 C 1.35920 * 116.99358 * 175.07876 * 9 7 6 11 11 C 1.38825 * 120.02534 * 245.95797 * 10 9 7 12 12 C 1.38185 * 120.08649 * 180.02562 * 11 10 9 13 13 C 1.38144 * 120.12260 * 0.02562 * 12 11 10 14 14 C 1.38902 * 120.04522 * 359.97438 * 13 12 11 15 15 O 1.35745 * 120.04461 * 180.02562 * 14 13 12 16 16 C 1.34832 * 116.99909 * 185.90126 * 15 14 13 17 17 H 1.07995 * 119.99891 * 5.55258 * 16 15 14 18 18 C 1.38656 * 119.99642 * 185.54861 * 16 15 14 19 19 N 1.31559 * 119.99526 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00147 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47596 * 89.99707 * 20 18 16 22 22 H 1.48499 * 109.46983 * 209.99682 * 20 18 16 23 23 H 1.48500 * 109.47288 * 329.99159 * 20 18 16 24 24 C 1.38574 * 120.01993 * 65.98775 * 10 9 7 25 25 C 1.39868 * 107.92125 * 0.26456 * 5 4 3 26 26 N 1.30832 * 108.20236 * 359.55310 * 25 5 4 27 27 H 1.08999 * 109.47497 * 299.99477 * 1 2 3 28 28 H 1.08999 * 109.47101 * 60.00607 * 1 2 3 29 29 H 1.09005 * 109.46420 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47497 * 240.00523 * 2 1 3 31 31 H 1.08999 * 109.47101 * 119.99393 * 2 1 3 32 32 H 1.08006 * 126.12351 * 0.04651 * 4 3 2 33 33 H 1.08995 * 109.46761 * 330.00229 * 6 5 4 34 34 H 1.09002 * 109.46846 * 209.99999 * 6 5 4 35 35 H 1.08009 * 119.95597 * 0.04841 * 11 10 9 36 36 H 1.07995 * 119.93598 * 180.02562 * 12 11 10 37 37 H 1.08008 * 119.98240 * 179.97438 * 13 12 11 38 38 H 0.97006 * 119.99459 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.06270 * 359.69124 * 24 10 9 40 40 H 1.08000 * 125.90161 * 179.73930 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8729 1.9213 0.8939 5 6 3.0710 3.2139 0.5464 6 6 3.9545 4.2002 1.2661 7 6 5.3459 4.1415 0.6902 8 8 5.5947 3.3770 -0.2117 9 8 6.3090 4.9389 1.1794 10 6 7.5638 4.7642 0.6871 11 6 8.5764 4.2989 1.5151 12 6 9.8526 4.1213 1.0160 13 6 10.1253 4.4066 -0.3079 14 6 9.1162 4.8724 -1.1410 15 8 9.3840 5.1522 -2.4420 16 6 8.3938 5.7151 -3.1635 17 1 7.4722 6.0054 -2.6811 18 6 8.5588 5.9213 -4.5246 19 7 7.5927 6.4710 -5.2284 20 14 10.1526 5.4186 -5.3590 21 1 10.0406 4.0172 -5.8370 22 1 10.4114 6.3161 -6.5134 23 1 11.2730 5.5231 -4.3900 24 6 7.8335 5.0510 -0.6416 25 6 2.3066 3.4745 -0.5956 26 7 1.6799 2.3751 -0.9275 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.3192 1.4126 1.7357 33 1 3.9893 3.9503 2.3265 34 1 3.5522 5.2057 1.1427 35 1 8.3662 4.0750 2.5506 36 1 10.6384 3.7588 1.6622 37 1 11.1238 4.2673 -0.6954 38 1 7.7083 6.6156 -6.1807 39 1 7.0461 5.4088 -1.2884 40 1 2.2466 4.4192 -1.1155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:05 Heat of formation + Delta-G solvation = 5.769720 kcal Electronic energy + Delta-G solvation = -25224.745364 eV Core-core repulsion = 21394.128311 eV Total energy + Delta-G solvation = -3830.617053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40894 -40.70255 -38.88605 -37.08305 -35.76383 -34.79444 -32.39441 -32.22232 -30.34331 -29.75159 -29.16563 -27.27838 -25.31710 -24.05292 -23.07621 -21.54783 -20.93492 -20.76319 -19.90037 -18.09162 -17.99740 -17.20685 -16.87498 -16.08374 -15.79880 -15.49877 -15.28282 -14.63596 -14.44665 -14.25398 -13.95858 -13.82669 -13.62493 -13.24128 -13.22571 -12.92881 -12.64804 -12.50938 -12.38190 -12.24370 -11.97608 -11.66610 -11.62163 -11.25015 -11.08520 -10.81110 -10.60321 -10.42287 -10.25483 -10.15861 -9.51011 -9.46758 -8.88122 -8.53234 -8.16215 -7.46977 -6.41712 -4.08721 1.68374 1.85965 2.13963 2.38043 2.49465 2.64828 3.22246 3.26196 3.38127 3.40790 4.23497 4.23691 4.42010 4.61527 4.67871 4.78100 4.82127 4.87682 4.97066 5.08249 5.11606 5.21218 5.33167 5.40717 5.52767 5.54460 5.66625 5.75011 5.81923 5.90435 5.97248 6.10344 6.30992 6.42996 6.59194 6.89599 6.91479 6.99042 7.09046 7.11541 7.49040 7.64194 7.75276 7.99743 8.25524 8.92590 9.51585 10.65798 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.003430 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.298102 B = 8161.625172 C = 9594.413638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 N -0.373 5.373 4 C 0.073 3.927 5 C -0.232 4.232 6 C -0.025 4.025 7 C 0.447 3.553 8 O -0.472 6.472 9 O -0.299 6.299 10 C 0.121 3.879 11 C -0.206 4.206 12 C -0.067 4.067 13 C -0.191 4.191 14 C 0.169 3.831 15 O -0.210 6.210 16 C -0.390 4.390 17 H 0.105 0.895 18 C 0.065 3.935 19 N -0.875 5.875 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.258 1.258 24 C -0.218 4.218 25 C 0.069 3.931 26 N -0.293 5.293 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.172 0.828 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.280 0.720 39 H 0.138 0.862 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.190 -9.506 15.924 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 N -0.155 5.155 4 C -0.073 4.073 5 C -0.244 4.244 6 C -0.063 4.063 7 C 0.288 3.712 8 O -0.355 6.355 9 O -0.215 6.215 10 C 0.080 3.920 11 C -0.225 4.225 12 C -0.085 4.085 13 C -0.210 4.210 14 C 0.116 3.884 15 O -0.115 6.115 16 C -0.465 4.465 17 H 0.122 0.878 18 C -0.139 4.139 19 N -0.513 5.513 20 Si 0.732 3.268 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.238 4.238 25 C -0.118 4.118 26 N -0.114 5.114 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.189 0.811 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.090 0.910 39 H 0.155 0.845 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.857 -10.421 14.393 20.824 hybrid contribution 1.109 0.228 -0.046 1.133 sum -9.748 -10.193 14.346 20.118 Atomic orbital electron populations 1.22051 0.93794 1.02760 1.03603 1.21680 0.95995 0.77554 1.03851 1.48619 1.35691 1.10176 1.20966 1.22251 0.94734 0.94095 0.96258 1.19385 1.07755 0.94979 1.02296 1.19464 0.86161 1.00706 1.00001 1.24177 0.87496 0.77846 0.81641 1.90755 1.81841 1.36102 1.26776 1.84524 1.16557 1.56959 1.63412 1.18266 0.81688 0.99526 0.92472 1.20472 0.93339 1.08952 0.99759 1.20466 0.95508 0.98300 0.94236 1.20299 0.98530 1.08848 0.93343 1.18886 0.91881 0.92562 0.85042 1.83600 1.40457 1.70010 1.17437 1.20755 0.96537 1.37926 0.91273 0.87774 1.24477 0.98662 0.95817 0.94943 1.69654 1.31999 1.41296 1.08313 0.86171 0.83001 0.78712 0.78966 1.19851 1.20672 1.18251 1.21352 0.98462 1.08882 0.95060 1.23804 0.95130 0.97649 0.95196 1.77333 1.24480 0.96570 1.12993 0.92133 0.91003 0.90787 0.89701 0.88727 0.81083 0.87271 0.86789 0.86515 0.85886 0.85990 0.90981 0.84474 0.79910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 10.10 37.16 0.38 -0.75 16 2 C 0.13 1.03 7.23 -4.04 -0.03 1.00 16 3 N -0.37 -4.43 3.68 -61.36 -0.23 -4.66 16 4 C 0.07 0.82 11.36 -17.22 -0.20 0.63 16 5 C -0.23 -2.91 4.59 -105.05 -0.48 -3.40 16 6 C -0.02 -0.27 6.30 -29.03 -0.18 -0.45 16 7 C 0.45 7.43 7.76 36.01 0.28 7.71 16 8 O -0.47 -9.95 15.10 -18.74 -0.28 -10.23 16 9 O -0.30 -5.29 10.05 -23.62 -0.24 -5.53 16 10 C 0.12 2.46 5.46 -39.24 -0.21 2.24 16 11 C -0.21 -3.63 9.98 -39.38 -0.39 -4.02 16 12 C -0.07 -1.14 10.03 -39.64 -0.40 -1.54 16 13 C -0.19 -3.83 9.99 -39.37 -0.39 -4.22 16 14 C 0.17 4.08 6.64 -39.12 -0.26 3.82 16 15 O -0.21 -5.73 8.58 0.06 0.00 -5.72 16 16 C -0.39 -11.39 9.90 30.89 0.31 -11.08 16 17 H 0.10 3.17 5.53 -52.49 -0.29 2.88 16 18 C 0.06 1.87 5.49 -17.51 -0.10 1.77 16 19 N -0.88 -25.89 13.96 55.48 0.77 -25.12 16 20 Si 0.91 22.10 28.62 -169.99 -4.86 17.24 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.26 -6.26 7.11 56.52 0.40 -5.85 16 24 C -0.22 -5.13 7.98 -39.25 -0.31 -5.45 16 25 C 0.07 0.95 11.96 -17.37 -0.21 0.74 16 26 N -0.29 -4.27 12.42 30.62 0.38 -3.89 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.47 8.07 -51.93 -0.42 0.06 16 32 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.12 2.22 8.06 -52.48 -0.42 1.79 16 38 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.14 3.52 5.72 -52.49 -0.30 3.22 16 40 H 0.18 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -35.89 355.30 -6.10 -41.99 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.80 Total: 3.57 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.21 Total: -13.00 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.93 Total: -33.67 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.52 Total: -21.48 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.86 Total: 17.24 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.89 -6.10 -41.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.764 kcal (2) G-P(sol) polarization free energy of solvation -35.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds