Wall clock time and date at job start Tue Mar 31 2020 10:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47411 * 2 1 4 4 C 1.50692 * 109.47295 * 239.99419 * 2 1 3 5 5 O 1.20830 * 120.00665 * 240.00599 * 4 2 1 6 6 O 1.34266 * 119.99818 * 60.00072 * 4 2 1 7 7 C 1.35926 * 117.00341 * 175.01466 * 6 4 2 8 8 C 1.38822 * 120.02147 * 255.27590 * 7 6 4 9 9 C 1.38188 * 120.08443 * 179.97438 * 8 7 6 10 10 C 1.38154 * 120.12268 * 359.78816 * 9 8 7 11 11 C 1.38892 * 120.03934 * 0.46594 * 10 9 8 12 12 O 1.35749 * 120.04547 * 179.78908 * 11 10 9 13 13 C 1.34824 * 117.00672 * 174.12431 * 12 11 10 14 14 H 1.08003 * 120.00059 * 5.07099 * 13 12 11 15 15 C 1.38656 * 120.00469 * 185.06499 * 13 12 11 16 16 N 1.31552 * 119.99513 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47057 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46933 * 119.99997 * 17 15 13 20 20 H 1.48497 * 109.46968 * 239.99729 * 17 15 13 21 21 C 1.38568 * 120.02232 * 75.29108 * 7 6 4 22 22 C 1.50700 * 109.46805 * 119.99639 * 2 1 3 23 23 C 1.39870 * 126.03923 * 59.69276 * 22 2 1 24 24 N 1.30840 * 108.20012 * 179.81649 * 23 22 2 25 25 N 1.40081 * 108.20566 * 0.43699 * 24 23 22 26 26 C 1.46509 * 126.03831 * 179.74084 * 25 24 23 27 27 C 1.34943 * 107.92733 * 359.71891 * 25 24 23 28 28 H 1.08994 * 109.46689 * 60.00059 * 1 2 3 29 29 H 1.08999 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47177 * 300.00506 * 1 2 3 31 31 H 1.08009 * 119.95666 * 0.02562 * 8 7 6 32 32 H 1.08000 * 119.93717 * 180.02562 * 9 8 7 33 33 H 1.07995 * 119.98243 * 180.24931 * 10 9 8 34 34 H 0.97003 * 119.99698 * 179.97438 * 16 15 13 35 35 H 1.08008 * 120.06194 * 359.96259 * 21 7 6 36 36 H 1.07993 * 125.90229 * 359.97438 * 23 22 2 37 37 H 1.08994 * 109.46793 * 269.98001 * 26 25 24 38 38 H 1.09001 * 109.46912 * 29.97062 * 26 25 24 39 39 H 1.08994 * 109.46989 * 149.97697 * 26 25 24 40 40 H 1.07998 * 126.12970 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7270 -1.6929 -1.1195 6 8 1.7080 -0.2519 -2.4498 7 6 2.2775 -0.8750 -3.5151 8 6 3.3131 -0.2614 -4.2067 9 6 3.8934 -0.8940 -5.2896 10 6 3.4480 -2.1406 -5.6848 11 6 2.4087 -2.7570 -4.9998 12 8 1.9681 -3.9800 -5.3907 13 6 1.0421 -4.5748 -4.6119 14 1 0.6243 -4.0446 -3.7688 15 6 0.6258 -5.8671 -4.8935 16 7 1.1342 -6.5127 -5.9208 17 14 -0.6577 -6.6909 -3.8148 18 1 -1.0675 -5.7590 -2.7336 19 1 -1.8416 -7.0463 -4.6378 20 1 -0.0839 -7.9223 -3.2153 21 6 1.8246 -2.1231 -3.9118 22 6 2.0323 -0.7103 1.2305 23 6 1.7684 -2.0390 1.5790 24 7 2.3775 -2.2938 2.7087 25 7 3.0408 -1.1308 3.1203 26 6 3.8406 -0.9800 4.3385 27 6 2.8135 -0.1738 2.1964 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.6662 0.7113 -3.8974 32 1 4.6991 -0.4146 -5.8256 33 1 3.9058 -2.6347 -6.5289 34 1 0.8433 -7.4169 -6.1176 35 1 1.0193 -2.6022 -3.3748 36 1 1.1680 -2.7351 1.0123 37 1 3.2001 -0.6457 5.1546 38 1 4.2903 -1.9382 4.5988 39 1 4.6264 -0.2440 4.1685 40 1 3.1876 0.8389 2.2233 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841346506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:53 Heat of formation + Delta-G solvation = 7.151723 kcal Electronic energy + Delta-G solvation = -25652.470846 eV Core-core repulsion = 21821.913721 eV Total energy + Delta-G solvation = -3830.557125 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.50917 -40.67919 -38.77144 -37.07661 -35.66081 -34.64024 -32.77845 -32.27441 -29.87477 -29.46568 -28.84438 -26.70219 -25.48160 -24.91497 -22.81772 -21.65821 -21.28401 -20.82787 -19.74540 -18.23984 -17.71355 -17.23296 -16.64896 -16.00598 -15.74215 -15.44390 -15.10568 -14.54036 -14.52602 -14.26385 -14.06051 -13.78534 -13.48718 -13.15169 -13.07020 -13.03701 -12.79186 -12.66048 -12.24259 -11.94048 -11.79356 -11.70223 -11.44478 -11.25040 -11.03439 -10.83674 -10.61703 -10.43827 -10.25814 -10.11644 -9.50890 -9.47839 -8.85222 -8.57810 -8.11873 -7.32563 -6.45810 -4.04842 1.68713 1.84855 2.24001 2.37544 2.45849 2.65276 3.13274 3.15995 3.21447 3.32298 3.97397 4.29075 4.48626 4.60115 4.71014 4.84293 4.87900 5.01876 5.06893 5.10247 5.13581 5.21898 5.31523 5.56994 5.59204 5.63045 5.77723 5.81186 5.90154 6.03227 6.10883 6.19292 6.37553 6.54634 6.59515 6.83319 6.95213 7.04954 7.12357 7.16942 7.36430 7.59452 7.64324 7.98256 8.26068 8.99712 9.66061 10.71878 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.003981 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.753734 B = 7031.842543 C = 8534.549418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.006 3.994 3 H 0.111 0.889 4 C 0.453 3.547 5 O -0.473 6.473 6 O -0.297 6.297 7 C 0.122 3.878 8 C -0.213 4.213 9 C -0.066 4.066 10 C -0.188 4.188 11 C 0.164 3.836 12 O -0.171 6.171 13 C -0.391 4.391 14 H 0.092 0.908 15 C 0.041 3.959 16 N -0.860 5.860 17 Si 0.940 3.060 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.229 4.229 22 C -0.228 4.228 23 C 0.084 3.916 24 N -0.298 5.298 25 N -0.380 5.380 26 C 0.104 3.896 27 C 0.066 3.934 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.270 0.730 35 H 0.132 0.868 36 H 0.181 0.819 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.803 15.965 16.246 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.015 4.015 3 H 0.129 0.871 4 C 0.294 3.706 5 O -0.356 6.356 6 O -0.213 6.213 7 C 0.082 3.918 8 C -0.232 4.232 9 C -0.084 4.084 10 C -0.207 4.207 11 C 0.109 3.891 12 O -0.074 6.074 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.163 4.163 16 N -0.495 5.495 17 Si 0.765 3.235 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.249 4.249 22 C -0.239 4.239 23 C -0.103 4.103 24 N -0.118 5.118 25 N -0.161 5.161 26 C -0.038 4.038 27 C -0.081 4.081 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.198 0.802 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.387 14.365 17.026 22.404 hybrid contribution -0.670 0.135 -0.099 0.691 sum 1.717 14.501 16.927 22.355 Atomic orbital electron populations 1.21785 0.91442 1.03441 1.03215 1.19095 0.97729 0.98907 0.85728 0.87071 1.24015 0.78386 0.83711 0.84457 1.90738 1.33978 1.24479 1.86417 1.84500 1.64644 1.58209 1.13905 1.18210 0.94412 0.92391 0.86820 1.20498 0.99453 1.01913 1.01377 1.20476 0.98349 0.93869 0.95703 1.20322 0.99757 0.96848 1.03807 1.19121 0.91690 0.86935 0.91333 1.83993 1.52080 1.24693 1.46672 1.21371 1.17142 0.97701 1.10517 0.89088 1.25284 0.98546 0.95322 0.97175 1.70045 1.41118 1.12273 1.26068 0.85655 0.79314 0.79369 0.79196 1.19009 1.20030 1.20007 1.21206 1.05628 0.95723 1.02334 1.19440 1.09487 0.95893 0.99112 1.23715 0.97954 0.95540 0.93099 1.77418 1.13372 1.05391 1.15666 1.48425 1.40347 1.08271 1.19081 1.21826 0.94289 1.04159 0.83504 1.22206 0.99358 0.95740 0.90759 0.90776 0.91774 0.91086 0.86835 0.86080 0.85947 0.91991 0.85063 0.80181 0.90844 0.89280 0.89576 0.80825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.01 37.16 0.33 -1.06 16 2 C 0.01 0.07 3.19 -92.93 -0.30 -0.23 16 3 H 0.11 0.94 8.11 -51.93 -0.42 0.52 16 4 C 0.45 7.54 7.07 36.00 0.25 7.79 16 5 O -0.47 -9.78 14.82 -18.75 -0.28 -10.06 16 6 O -0.30 -5.28 9.93 -23.63 -0.23 -5.52 16 7 C 0.12 2.52 5.18 -39.24 -0.20 2.31 16 8 C -0.21 -3.95 9.98 -39.38 -0.39 -4.35 16 9 C -0.07 -1.20 10.03 -39.63 -0.40 -1.59 16 10 C -0.19 -4.05 9.99 -39.37 -0.39 -4.44 16 11 C 0.16 4.11 6.65 -39.13 -0.26 3.85 16 12 O -0.17 -5.00 9.76 0.07 0.00 -5.00 16 13 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 14 H 0.09 2.48 5.20 -52.48 -0.27 2.21 16 15 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 16 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 17 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 C -0.23 -5.39 8.58 -39.25 -0.34 -5.73 16 22 C -0.23 -2.82 4.36 -105.05 -0.46 -3.28 16 23 C 0.08 1.21 10.78 -17.36 -0.19 1.02 16 24 N -0.30 -4.38 12.58 30.62 0.39 -3.99 16 25 N -0.38 -4.25 4.01 -68.16 -0.27 -4.52 16 26 C 0.10 0.66 11.47 59.85 0.69 1.34 16 27 C 0.07 0.67 11.38 -17.22 -0.20 0.47 16 28 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 29 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 32 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.13 3.18 5.64 -52.48 -0.30 2.88 16 36 H 0.18 2.58 8.06 -52.49 -0.42 2.15 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -36.32 354.54 -5.74 -42.06 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.77 Total: 4.17 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -1.65 Total: -13.80 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.87 Total: -33.30 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.51 Total: -20.57 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.32 -5.74 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841346506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.210 kcal (2) G-P(sol) polarization free energy of solvation -36.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds