Wall clock time and date at job start Tue Mar 31 2020 11:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.46992 * 2 1 4 4 C 1.46906 * 111.00269 * 164.90343 * 3 2 1 5 5 C 1.53001 * 109.46793 * 293.95865 * 4 3 2 6 6 S 1.81402 * 109.46541 * 179.97438 * 5 4 3 7 7 C 1.81408 * 102.99717 * 179.97438 * 6 5 4 8 8 C 1.46906 * 111.00098 * 288.85893 * 3 2 1 9 9 N 1.46506 * 109.47113 * 164.25933 * 8 3 2 10 10 N 1.40168 * 126.14543 * 92.88249 * 9 8 3 11 11 C 1.32237 * 107.75599 * 180.02562 * 10 9 8 12 12 C 1.40120 * 125.92560 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00218 * 186.68435 * 12 11 10 14 14 C 1.40043 * 119.99696 * 6.67935 * 12 11 10 15 15 N 1.30798 * 120.00154 * 6.95121 * 14 12 11 16 16 Si 1.86804 * 119.99831 * 186.95026 * 14 12 11 17 17 H 1.48496 * 109.46976 * 94.97446 * 16 14 12 18 18 H 1.48495 * 109.46767 * 214.97865 * 16 14 12 19 19 H 1.48500 * 109.46691 * 334.97799 * 16 14 12 20 20 N 1.38507 * 108.14957 * 359.97438 * 11 10 9 21 21 C 1.46497 * 125.83242 * 180.02562 * 20 11 10 22 22 C 1.34732 * 108.32457 * 359.74051 * 20 11 10 23 23 S 1.71201 * 125.96561 * 180.26209 * 22 20 11 24 24 H 1.09000 * 109.47015 * 186.13399 * 1 2 3 25 25 H 1.08999 * 109.47385 * 306.13810 * 1 2 3 26 26 H 1.08999 * 109.47307 * 66.13294 * 1 2 3 27 27 H 1.09003 * 109.47207 * 240.00539 * 2 1 3 28 28 H 1.08998 * 109.47516 * 120.00046 * 2 1 3 29 29 H 1.09001 * 109.46758 * 53.95325 * 4 3 2 30 30 H 1.08996 * 109.46973 * 173.95434 * 4 3 2 31 31 H 1.09001 * 109.47028 * 299.99295 * 5 4 3 32 32 H 1.08996 * 109.47340 * 59.99629 * 5 4 3 33 33 H 1.08999 * 109.46588 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46474 * 299.99562 * 7 6 5 35 35 H 1.08992 * 109.47195 * 59.99978 * 7 6 5 36 36 H 1.08995 * 109.47234 * 284.25670 * 8 3 2 37 37 H 1.08998 * 109.47159 * 44.26154 * 8 3 2 38 38 H 0.96996 * 119.99721 * 180.02562 * 15 14 12 39 39 H 1.08995 * 109.47120 * 90.00499 * 21 20 11 40 40 H 1.08997 * 109.46670 * 210.00056 * 21 20 11 41 41 H 1.08995 * 109.47260 * 330.00353 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4435 1.4401 0.3572 5 6 3.6229 0.9905 1.8086 6 16 5.3812 1.0578 2.2494 7 6 5.3909 0.4996 3.9754 8 6 1.7771 2.0291 -1.2979 9 7 1.9211 3.4803 -1.1573 10 7 3.0901 4.2207 -1.3809 11 6 2.8126 5.4925 -1.1483 12 6 3.7099 6.5631 -1.2582 13 1 3.4122 7.5518 -0.9416 14 6 4.9927 6.3510 -1.7784 15 7 5.3082 5.1879 -2.2868 16 14 6.2532 7.7292 -1.7463 17 1 7.1055 7.5924 -0.5380 18 1 7.1020 7.6521 -2.9623 19 1 5.5539 9.0388 -1.7130 20 7 1.4809 5.5829 -0.7784 21 6 0.7683 6.8157 -0.4339 22 6 0.9515 4.3441 -0.7955 23 16 -0.6683 3.9377 -0.4187 24 1 -0.3633 -1.0218 0.1098 25 1 -0.3634 0.6060 0.8299 26 1 -0.3634 0.4158 -0.9398 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 4.0088 0.7795 -0.3003 30 1 3.8068 2.4616 0.2456 31 1 3.0576 1.6510 2.4661 32 1 3.2595 -0.0311 1.9201 33 1 6.4138 0.5003 4.3517 34 1 4.7818 1.1730 4.5783 35 1 4.9828 -0.5094 4.0332 36 1 2.4993 1.6613 -2.0266 37 1 0.7678 1.7953 -1.6366 38 1 6.1968 5.0409 -2.6468 39 1 0.3261 7.2432 -1.3337 40 1 -0.0185 6.5913 0.2862 41 1 1.4671 7.5296 0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842647495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:51 Heat of formation + Delta-G solvation = 68.037536 kcal Electronic energy + Delta-G solvation = -22819.062638 eV Core-core repulsion = 19601.635293 eV Total energy + Delta-G solvation = -3217.427345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.60758 -39.30370 -36.04185 -35.54829 -33.08284 -32.57479 -30.87934 -29.83202 -28.66134 -28.25970 -26.00162 -24.20904 -23.46789 -22.64029 -21.68734 -19.48769 -18.55742 -17.63778 -17.41248 -17.18368 -16.89529 -16.49025 -16.35455 -15.98341 -15.61695 -15.22194 -14.76615 -14.65372 -14.30796 -13.94816 -13.86515 -13.73317 -13.61827 -13.45161 -13.07912 -13.01572 -12.74697 -12.69933 -12.50671 -12.41914 -12.16162 -11.97267 -11.86047 -11.62313 -11.36806 -11.01206 -10.88480 -10.65000 -9.55385 -8.79210 -8.77615 -8.59772 -8.50552 -6.94445 0.50322 0.66099 0.86520 1.27943 1.44424 1.59851 1.60923 1.70005 1.86157 2.13193 2.43294 2.87142 3.09853 3.56480 3.67701 3.80959 4.03644 4.07195 4.17333 4.28603 4.29313 4.31996 4.33198 4.46455 4.51336 4.64044 4.69471 4.71981 4.81785 4.82729 4.93939 4.97356 5.07234 5.10971 5.29426 5.43796 5.71725 5.74643 5.98216 6.16282 6.50323 6.58024 7.34660 8.24262 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.009074 B = 0.005912 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3085.078269 B = 4734.707599 C = 6919.408714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.057 3.943 3 N -0.550 5.550 4 C 0.081 3.919 5 C -0.057 4.057 6 S -0.315 6.315 7 C -0.104 4.104 8 C 0.325 3.675 9 N -0.374 5.374 10 N -0.373 5.373 11 C 0.357 3.643 12 C -0.453 4.453 13 H 0.117 0.883 14 C 0.039 3.961 15 N -0.776 5.776 16 Si 1.002 2.998 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.244 1.244 20 N -0.519 5.519 21 C 0.096 3.904 22 C 0.467 3.533 23 S -0.730 6.730 24 H 0.084 0.916 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.291 0.709 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 -5.997 6.077 8.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 N -0.277 5.277 4 C -0.048 4.048 5 C -0.205 4.205 6 S -0.091 6.091 7 C -0.272 4.272 8 C 0.114 3.886 9 N -0.160 5.160 10 N -0.206 5.206 11 C 0.108 3.892 12 C -0.495 4.495 13 H 0.135 0.865 14 C -0.184 4.184 15 N -0.400 5.400 16 Si 0.821 3.179 17 H -0.191 1.191 18 H -0.195 1.195 19 H -0.167 1.167 20 N -0.220 5.220 21 C -0.045 4.045 22 C 0.096 3.904 23 S -0.606 6.606 24 H 0.102 0.898 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.265 -6.601 5.637 9.274 hybrid contribution 0.149 0.497 -0.033 0.520 sum 3.413 -6.105 5.603 8.962 Atomic orbital electron populations 1.21702 0.93825 1.02108 1.01871 1.22204 0.96759 0.85618 1.02408 1.61760 1.16857 1.19442 1.29688 1.21616 0.87880 1.01179 0.94112 1.23207 0.93325 1.05088 0.98908 1.87266 1.12869 1.89804 1.19188 1.23419 1.07579 1.04561 0.91673 1.21808 1.02779 0.73191 0.90833 1.49418 1.07148 1.07682 1.51723 1.79215 1.00546 1.00662 1.40167 1.21647 0.81242 0.94091 0.92214 1.18875 0.96260 0.94211 1.40133 0.86487 1.26832 1.00376 0.99490 0.91709 1.69946 1.21883 1.24396 1.23821 0.84862 0.76648 0.77691 0.78678 1.19124 1.19521 1.16675 1.46274 1.10478 1.07462 1.57808 1.22002 0.97638 0.82273 1.02600 1.22899 0.93643 0.84212 0.89632 1.92566 1.00221 1.89321 1.78518 0.89750 0.93433 0.93807 0.93107 0.88618 0.93942 0.92579 0.90856 0.87699 0.86649 0.90070 0.88774 0.91508 0.86816 0.89845 0.90129 0.89313 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.85 71.98 0.71 -2.85 16 2 C 0.06 1.45 5.56 86.30 0.48 1.93 16 3 N -0.55 -18.88 4.59 -908.56 -4.17 -23.05 16 4 C 0.08 2.82 4.86 86.30 0.42 3.24 16 5 C -0.06 -1.64 5.90 71.98 0.42 -1.22 16 6 S -0.32 -9.08 22.38 -56.49 -1.26 -10.34 16 7 C -0.10 -1.90 10.76 113.37 1.22 -0.68 16 8 C 0.33 12.72 5.75 170.80 0.98 13.70 16 9 N -0.37 -17.61 3.45 -359.71 -1.24 -18.85 16 10 N -0.37 -19.28 9.95 -55.16 -0.55 -19.83 16 11 C 0.36 17.73 7.47 133.52 1.00 18.73 16 12 C -0.45 -20.94 8.99 23.16 0.21 -20.73 16 13 H 0.12 4.74 7.08 -2.91 -0.02 4.72 16 14 C 0.04 1.75 5.49 85.28 0.47 2.22 16 15 N -0.78 -37.86 11.98 21.85 0.26 -37.60 16 16 Si 1.00 33.32 29.57 68.60 2.03 35.34 16 17 H -0.27 -8.85 7.11 99.48 0.71 -8.15 16 18 H -0.27 -8.80 7.11 99.48 0.71 -8.09 16 19 H -0.24 -7.46 7.11 99.48 0.71 -6.75 16 20 N -0.52 -23.81 3.17 -548.32 -1.74 -25.55 16 21 C 0.10 3.41 10.66 127.77 1.36 4.77 16 22 C 0.47 22.57 7.84 179.06 1.40 23.97 16 23 S -0.73 -35.84 29.56 -56.49 -1.67 -37.51 16 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.04 1.26 6.73 -2.39 -0.02 1.24 16 27 H 0.05 1.16 8.06 -2.39 -0.02 1.14 16 28 H 0.10 2.05 5.95 -2.39 -0.01 2.04 16 29 H 0.04 1.44 8.12 -2.39 -0.02 1.42 16 30 H 0.06 2.52 6.83 -2.39 -0.02 2.50 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.10 2.42 6.29 -2.39 -0.02 2.41 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 2.56 8.05 -2.39 -0.02 2.54 16 37 H 0.11 4.38 5.93 -2.39 -0.01 4.37 16 38 H 0.29 12.92 8.29 -92.71 -0.77 12.15 16 39 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.09 3.14 7.62 -2.39 -0.02 3.12 16 41 H 0.10 3.20 7.27 -2.39 -0.02 3.18 16 Total: -1.00 -65.38 362.30 1.36 -64.02 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 1.03 Total: 30.29 kcal Atomic # 6 Polarization: 34.41 SS G_CDS: 8.67 Total: 43.09 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -7.43 Total: -124.88 kcal Atomic # 14 Polarization: 33.32 SS G_CDS: 2.03 Total: 35.34 kcal Atomic # 16 Polarization: -44.92 SS G_CDS: -2.93 Total: -47.86 kcal Total: -65.38 1.36 -64.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842647495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.057 kcal (2) G-P(sol) polarization free energy of solvation -65.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds