Wall clock time and date at job start Tue Mar 31 2020 11:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47171 * 2 1 4 4 C 1.34946 * 126.03584 * 124.97505 * 3 2 1 5 5 C 1.35322 * 107.74484 * 179.75164 * 4 3 2 6 6 C 1.39869 * 107.92031 * 0.39711 * 5 4 3 7 7 C 1.50697 * 125.89961 * 179.86017 * 6 5 4 8 8 C 1.50699 * 109.47129 * 124.71439 * 7 6 5 9 9 O 1.20826 * 119.99786 * 0.02562 * 8 7 6 10 10 O 1.34267 * 120.00088 * 179.97438 * 8 7 6 11 11 C 1.35916 * 116.99914 * 175.08543 * 10 8 7 12 12 C 1.38830 * 120.02086 * 245.71242 * 11 10 8 13 13 C 1.38188 * 120.08399 * 180.27630 * 12 11 10 14 14 C 1.38160 * 120.12303 * 0.02562 * 13 12 11 15 15 C 1.38899 * 120.03788 * 0.02562 * 14 13 12 16 16 O 1.35754 * 120.03931 * 179.97438 * 15 14 13 17 17 C 1.34825 * 117.00003 * 185.95081 * 16 15 14 18 18 H 1.08004 * 120.00200 * 5.54586 * 17 16 15 19 19 C 1.38647 * 119.99937 * 185.54586 * 17 16 15 20 20 N 1.31553 * 120.00413 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 120.00083 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46897 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47077 * 120.00116 * 21 19 17 24 24 H 1.48493 * 109.47198 * 240.00266 * 21 19 17 25 25 C 1.38567 * 120.02229 * 65.99001 * 11 10 8 26 26 N 1.30835 * 108.19919 * 359.60134 * 6 5 4 27 27 H 1.09003 * 109.46564 * 299.99475 * 1 2 3 28 28 H 1.09002 * 109.47430 * 59.99159 * 1 2 3 29 29 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46564 * 240.00525 * 2 1 3 31 31 H 1.08993 * 109.47409 * 120.00212 * 2 1 3 32 32 H 1.08000 * 126.12644 * 0.02562 * 4 3 2 33 33 H 1.08001 * 126.03636 * 180.27204 * 5 4 3 34 34 H 1.09000 * 109.46942 * 4.71785 * 7 6 5 35 35 H 1.09002 * 109.47430 * 244.72138 * 7 6 5 36 36 H 1.07995 * 119.95836 * 0.25730 * 12 11 10 37 37 H 1.07997 * 119.93991 * 179.97438 * 13 12 11 38 38 H 1.08000 * 119.98142 * 179.97438 * 14 13 12 39 39 H 0.97002 * 120.00984 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.05861 * 359.70392 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8727 1.9211 0.8942 5 6 3.0758 3.2121 0.5430 6 6 2.3126 3.4724 -0.5998 7 6 2.2360 4.7882 -1.3305 8 6 2.5936 4.5796 -2.7795 9 8 2.8806 3.4757 -3.1781 10 8 2.5922 5.6203 -3.6279 11 6 3.0226 5.3839 -4.8952 12 6 4.1861 5.9842 -5.3570 13 6 4.6219 5.7492 -6.6471 14 6 3.9011 4.9168 -7.4816 15 6 2.7357 4.3144 -7.0253 16 8 2.0272 3.4969 -7.8454 17 6 0.8441 3.0434 -7.3844 18 1 0.4579 3.4032 -6.4421 19 6 0.1234 2.1150 -8.1199 20 7 0.5940 1.6763 -9.2674 21 14 -1.5154 1.4860 -7.4809 22 1 -1.8187 2.1302 -6.1776 23 1 -2.5861 1.8148 -8.4560 24 1 -1.4445 0.0137 -7.3012 25 6 2.2973 4.5480 -5.7291 26 7 1.6808 2.3747 -0.9281 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.3184 1.4127 1.7364 33 1 3.7130 3.9174 1.0558 34 1 2.9349 5.4941 -0.8818 35 1 1.2232 5.1849 -1.2596 36 1 4.7512 6.6359 -4.7072 37 1 5.5271 6.2178 -7.0041 38 1 4.2435 4.7351 -8.4897 39 1 0.0896 1.0271 -9.7822 40 1 1.3922 4.0799 -5.3715 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844578265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:09 Heat of formation + Delta-G solvation = 5.519901 kcal Electronic energy + Delta-G solvation = -25461.633975 eV Core-core repulsion = 21631.006088 eV Total energy + Delta-G solvation = -3830.627886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39047 -40.67985 -38.71041 -37.00455 -35.65237 -34.82621 -32.26831 -31.94002 -30.02605 -29.59826 -28.92104 -28.20731 -25.39260 -23.94875 -22.75729 -21.60195 -21.25907 -20.66465 -19.49784 -18.22437 -17.79949 -17.16898 -16.81269 -16.08407 -15.74391 -15.49685 -15.08274 -14.59403 -14.42066 -14.30600 -14.00624 -13.62632 -13.60162 -13.28363 -13.05076 -12.95316 -12.66106 -12.52402 -12.25682 -12.17016 -11.80311 -11.56048 -11.49206 -11.21230 -10.97348 -10.84532 -10.58080 -10.42302 -10.29388 -10.15274 -9.48727 -9.34023 -8.83091 -8.65198 -8.07431 -7.29571 -6.44050 -4.02550 1.75790 1.89655 2.26774 2.37174 2.47229 2.64185 3.13966 3.16438 3.22658 3.31546 3.99158 4.20473 4.52127 4.55834 4.64481 4.76279 4.97510 5.00065 5.06270 5.13018 5.26221 5.28625 5.34944 5.47559 5.58360 5.65152 5.67974 5.85002 5.86674 5.95420 6.05759 6.21145 6.35589 6.53449 6.62763 6.93286 6.97392 7.09475 7.14607 7.20153 7.38814 7.67204 7.67506 8.00267 8.26459 9.01684 9.68311 10.73699 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.004479 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.669335 B = 6249.576100 C = 8615.396730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.129 3.871 3 N -0.369 5.369 4 C 0.048 3.952 5 C -0.263 4.263 6 C 0.070 3.930 7 C -0.024 4.024 8 C 0.450 3.550 9 O -0.463 6.463 10 O -0.297 6.297 11 C 0.121 3.879 12 C -0.212 4.212 13 C -0.065 4.065 14 C -0.190 4.190 15 C 0.163 3.837 16 O -0.172 6.172 17 C -0.389 4.389 18 H 0.091 0.909 19 C 0.041 3.959 20 N -0.861 5.861 21 Si 0.939 3.061 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.228 4.228 26 N -0.254 5.254 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.173 0.827 33 H 0.149 0.851 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.270 0.730 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 2.103 21.314 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.008 3.992 3 N -0.152 5.152 4 C -0.097 4.097 5 C -0.292 4.292 6 C -0.097 4.097 7 C -0.064 4.064 8 C 0.290 3.710 9 O -0.346 6.346 10 O -0.213 6.213 11 C 0.081 3.919 12 C -0.231 4.231 13 C -0.084 4.084 14 C -0.210 4.210 15 C 0.109 3.891 16 O -0.075 6.075 17 C -0.465 4.465 18 H 0.108 0.892 19 C -0.163 4.163 20 N -0.496 5.496 21 Si 0.764 3.236 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.248 4.248 26 N -0.076 5.076 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.190 0.810 33 H 0.166 0.834 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.080 0.920 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.348 0.742 19.942 20.093 hybrid contribution -0.215 -0.152 0.964 0.999 sum 2.133 0.591 20.905 21.022 Atomic orbital electron populations 1.22060 0.93698 1.02933 1.03686 1.21711 0.96227 0.77408 1.03806 1.48771 1.35531 1.10219 1.20662 1.22503 0.95968 0.94804 0.96439 1.21283 1.09329 0.96930 1.01704 1.21490 0.98161 0.94052 0.96007 1.19558 1.06018 0.93643 0.87136 1.23656 0.75502 0.83205 0.88595 1.90786 1.41438 1.24778 1.77558 1.84493 1.76654 1.39623 1.20546 1.18243 0.94017 0.98676 0.80997 1.20411 0.96859 1.07944 0.97928 1.20470 0.98367 0.96860 0.92676 1.20311 0.96624 1.02984 1.01053 1.19148 0.91080 0.90292 0.88584 1.84006 1.30694 1.54105 1.38660 1.21364 0.93193 1.24496 1.07441 0.89165 1.25268 0.99793 0.95674 0.95569 1.70042 1.38267 1.29143 1.12125 0.85665 0.80107 0.78900 0.78945 1.19013 1.20014 1.20063 1.21243 1.03838 1.04749 0.94957 1.77474 1.22772 0.96177 1.11166 0.92219 0.90772 0.90676 0.89503 0.88720 0.81024 0.83377 0.85707 0.86091 0.86649 0.86014 0.85968 0.92031 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.10 37.16 0.38 -1.12 16 2 C 0.13 1.19 7.23 -4.04 -0.03 1.16 16 3 N -0.37 -4.65 3.68 -61.37 -0.23 -4.88 16 4 C 0.05 0.49 11.45 -17.22 -0.20 0.30 16 5 C -0.26 -2.92 10.72 -40.01 -0.43 -3.35 16 6 C 0.07 0.98 6.02 -82.41 -0.50 0.48 16 7 C -0.02 -0.30 6.39 -29.04 -0.19 -0.48 16 8 C 0.45 7.99 7.76 36.01 0.28 8.27 16 9 O -0.46 -10.31 14.63 -18.75 -0.27 -10.58 16 10 O -0.30 -5.52 10.05 -23.60 -0.24 -5.75 16 11 C 0.12 2.58 5.46 -39.24 -0.21 2.37 16 12 C -0.21 -4.00 9.99 -39.38 -0.39 -4.40 16 13 C -0.07 -1.21 10.03 -39.63 -0.40 -1.61 16 14 C -0.19 -4.17 9.99 -39.37 -0.39 -4.57 16 15 C 0.16 4.20 6.64 -39.13 -0.26 3.94 16 16 O -0.17 -5.12 9.76 0.05 0.00 -5.12 16 17 C -0.39 -11.48 9.44 30.88 0.29 -11.19 16 18 H 0.09 2.56 5.30 -52.48 -0.28 2.28 16 19 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 20 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 21 Si 0.94 21.61 29.55 -169.99 -5.02 16.59 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.23 -5.58 7.99 -39.25 -0.31 -5.90 16 26 N -0.25 -4.14 11.77 33.67 0.40 -3.74 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.03 8.12 -51.93 -0.42 0.61 16 35 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.13 3.39 5.72 -52.49 -0.30 3.09 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -37.62 355.64 -6.49 -44.11 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.78 Total: 4.18 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -2.46 Total: -14.99 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.93 Total: -33.79 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.51 Total: -21.45 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.62 -6.49 -44.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844578265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.631 kcal (2) G-P(sol) polarization free energy of solvation -37.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds