Wall clock time and date at job start Tue Mar 31 2020 11:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47171 * 2 1 4 4 C 1.34946 * 126.03584 * 124.97505 * 3 2 1 5 5 C 1.35322 * 107.74484 * 179.75164 * 4 3 2 6 6 C 1.39869 * 107.92031 * 0.39711 * 5 4 3 7 7 C 1.50697 * 125.89961 * 179.86017 * 6 5 4 8 8 C 1.50699 * 109.47129 * 124.71439 * 7 6 5 9 9 O 1.20826 * 119.99786 * 0.02562 * 8 7 6 10 10 O 1.34267 * 120.00088 * 179.97438 * 8 7 6 11 11 C 1.35916 * 116.99914 * 175.08543 * 10 8 7 12 12 C 1.38830 * 120.02086 * 245.71242 * 11 10 8 13 13 C 1.38188 * 120.08399 * 180.27630 * 12 11 10 14 14 C 1.38160 * 120.12303 * 0.02562 * 13 12 11 15 15 C 1.38899 * 120.03788 * 0.02562 * 14 13 12 16 16 O 1.35754 * 120.03931 * 179.97438 * 15 14 13 17 17 C 1.34825 * 117.00003 * 185.95081 * 16 15 14 18 18 H 1.08004 * 120.00200 * 5.54586 * 17 16 15 19 19 C 1.38647 * 119.99937 * 185.54586 * 17 16 15 20 20 N 1.31553 * 120.00413 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 120.00083 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46897 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47077 * 120.00116 * 21 19 17 24 24 H 1.48493 * 109.47198 * 240.00266 * 21 19 17 25 25 C 1.38567 * 120.02229 * 65.99001 * 11 10 8 26 26 N 1.30835 * 108.19919 * 359.60134 * 6 5 4 27 27 H 1.09003 * 109.46564 * 299.99475 * 1 2 3 28 28 H 1.09002 * 109.47430 * 59.99159 * 1 2 3 29 29 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46564 * 240.00525 * 2 1 3 31 31 H 1.08993 * 109.47409 * 120.00212 * 2 1 3 32 32 H 1.08000 * 126.12644 * 0.02562 * 4 3 2 33 33 H 1.08001 * 126.03636 * 180.27204 * 5 4 3 34 34 H 1.09000 * 109.46942 * 4.71785 * 7 6 5 35 35 H 1.09002 * 109.47430 * 244.72138 * 7 6 5 36 36 H 1.07995 * 119.95836 * 0.25730 * 12 11 10 37 37 H 1.07997 * 119.93991 * 179.97438 * 13 12 11 38 38 H 1.08000 * 119.98142 * 179.97438 * 14 13 12 39 39 H 0.97002 * 120.00984 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.05861 * 359.70392 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8727 1.9211 0.8942 5 6 3.0758 3.2121 0.5430 6 6 2.3126 3.4724 -0.5998 7 6 2.2360 4.7882 -1.3305 8 6 2.5936 4.5796 -2.7795 9 8 2.8806 3.4757 -3.1781 10 8 2.5922 5.6203 -3.6279 11 6 3.0226 5.3839 -4.8952 12 6 4.1861 5.9842 -5.3570 13 6 4.6219 5.7492 -6.6471 14 6 3.9011 4.9168 -7.4816 15 6 2.7357 4.3144 -7.0253 16 8 2.0272 3.4969 -7.8454 17 6 0.8441 3.0434 -7.3844 18 1 0.4579 3.4032 -6.4421 19 6 0.1234 2.1150 -8.1199 20 7 0.5940 1.6763 -9.2674 21 14 -1.5154 1.4860 -7.4809 22 1 -1.8187 2.1302 -6.1776 23 1 -2.5861 1.8148 -8.4560 24 1 -1.4445 0.0137 -7.3012 25 6 2.2973 4.5480 -5.7291 26 7 1.6808 2.3747 -0.9281 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.3184 1.4127 1.7364 33 1 3.7130 3.9174 1.0558 34 1 2.9349 5.4941 -0.8818 35 1 1.2232 5.1849 -1.2596 36 1 4.7512 6.6359 -4.7072 37 1 5.5271 6.2178 -7.0041 38 1 4.2435 4.7351 -8.4897 39 1 0.0896 1.0271 -9.7822 40 1 1.3922 4.0799 -5.3715 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844578265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:08 Heat of formation + Delta-G solvation = -19.373341 kcal Electronic energy + Delta-G solvation = -25462.713427 eV Core-core repulsion = 21631.006088 eV Total energy + Delta-G solvation = -3831.707338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.50150 -41.98221 -40.55233 -38.66826 -37.35242 -35.68571 -34.38592 -32.91537 -31.39335 -30.82889 -30.60375 -29.22717 -27.49389 -25.15699 -23.94246 -23.35184 -22.17557 -22.06078 -20.53904 -20.14247 -19.52481 -18.38136 -18.00837 -17.62966 -17.32130 -16.88798 -16.39456 -16.13445 -16.03463 -15.63146 -15.34724 -15.16196 -14.80134 -14.70044 -14.37137 -14.26644 -13.92605 -13.76325 -13.45006 -13.22855 -13.05428 -12.99474 -12.91297 -12.74666 -12.56497 -12.28354 -12.22886 -11.95479 -11.80062 -11.51474 -11.39809 -10.89717 -10.29511 -9.78799 -9.48648 -9.16367 -8.57816 -6.26410 0.13723 0.54209 0.95257 1.11481 1.24120 1.32504 1.42431 1.53155 1.64480 2.07838 2.08555 2.70537 3.03702 3.34049 3.38621 3.72386 3.79312 3.98936 4.00877 4.06098 4.19081 4.24848 4.30057 4.31468 4.42340 4.51828 4.61438 4.73392 4.80095 4.85278 4.90097 4.93433 4.97910 5.10479 5.18366 5.34230 5.44350 5.51496 5.55650 5.68056 5.90464 6.01324 6.21378 6.76948 6.78704 6.86488 7.62269 8.65028 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.004479 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.669335 B = 6249.576100 C = 8615.396730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 N -0.379 5.379 4 C 0.056 3.944 5 C -0.271 4.271 6 C 0.050 3.950 7 C -0.015 4.015 8 C 0.449 3.551 9 O -0.516 6.516 10 O -0.290 6.290 11 C 0.113 3.887 12 C -0.187 4.187 13 C -0.047 4.047 14 C -0.198 4.198 15 C 0.124 3.876 16 O -0.222 6.222 17 C -0.415 4.415 18 H 0.085 0.915 19 C -0.014 4.014 20 N -0.912 5.912 21 Si 1.012 2.988 22 H -0.265 1.265 23 H -0.255 1.255 24 H -0.264 1.264 25 C -0.249 4.249 26 N -0.324 5.324 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.141 0.859 32 H 0.219 0.781 33 H 0.180 0.820 34 H 0.174 0.826 35 H 0.141 0.859 36 H 0.165 0.835 37 H 0.179 0.821 38 H 0.131 0.869 39 H 0.276 0.724 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.925 3.665 24.804 25.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.001 3.999 3 N -0.162 5.162 4 C -0.090 4.090 5 C -0.300 4.300 6 C -0.116 4.116 7 C -0.053 4.053 8 C 0.292 3.708 9 O -0.401 6.401 10 O -0.205 6.205 11 C 0.072 3.928 12 C -0.205 4.205 13 C -0.064 4.064 14 C -0.217 4.217 15 C 0.074 3.926 16 O -0.128 6.128 17 C -0.491 4.491 18 H 0.102 0.898 19 C -0.213 4.213 20 N -0.549 5.549 21 Si 0.831 3.169 22 H -0.189 1.189 23 H -0.179 1.179 24 H -0.189 1.189 25 C -0.269 4.269 26 N -0.148 5.148 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.235 0.765 33 H 0.198 0.802 34 H 0.191 0.809 35 H 0.159 0.841 36 H 0.182 0.818 37 H 0.197 0.803 38 H 0.149 0.851 39 H 0.085 0.915 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.128 2.359 23.461 23.938 hybrid contribution -0.511 -0.462 0.079 0.693 sum 3.618 1.897 23.540 23.892 Atomic orbital electron populations 1.21997 0.93918 1.03862 1.01926 1.22002 0.96188 0.76493 1.05203 1.49052 1.36034 1.10599 1.20538 1.23322 0.94344 0.94810 0.96507 1.21724 1.09295 0.98037 1.00962 1.21932 0.98516 0.94029 0.97123 1.19868 1.08309 0.94333 0.82821 1.24879 0.73665 0.82076 0.90144 1.90778 1.44028 1.26679 1.78597 1.84528 1.76663 1.39922 1.19393 1.18491 0.94468 0.97970 0.81906 1.21064 0.95045 1.05972 0.98457 1.21110 0.99052 0.94578 0.91685 1.20718 0.95552 1.03095 1.02307 1.19762 0.92638 0.90979 0.89265 1.83950 1.31571 1.56758 1.40550 1.21650 0.94227 1.25571 1.07684 0.89778 1.26473 1.03772 0.95366 0.95656 1.70149 1.40451 1.30581 1.13732 0.84647 0.75204 0.78497 0.78545 1.18905 1.17869 1.18862 1.21172 1.03813 1.06440 0.95477 1.77388 1.25393 0.98069 1.13933 0.91678 0.94675 0.88381 0.91164 0.84151 0.76477 0.80229 0.80876 0.84127 0.81793 0.80348 0.85123 0.91463 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.10 71.98 0.73 -2.14 16 2 C 0.12 2.14 7.23 86.38 0.62 2.76 16 3 N -0.38 -9.27 3.68 -348.06 -1.28 -10.55 16 4 C 0.06 0.97 11.45 83.54 0.96 1.93 16 5 C -0.27 -5.25 10.72 21.99 0.24 -5.02 16 6 C 0.05 1.34 6.02 43.10 0.26 1.60 16 7 C -0.02 -0.34 6.39 29.10 0.19 -0.15 16 8 C 0.45 15.83 7.76 71.24 0.55 16.39 16 9 O -0.52 -23.80 14.63 21.96 0.32 -23.48 16 10 O -0.29 -10.45 10.05 4.59 0.05 -10.40 16 11 C 0.11 4.74 5.46 22.49 0.12 4.86 16 12 C -0.19 -6.34 9.99 22.40 0.22 -6.12 16 13 C -0.05 -1.55 10.03 22.24 0.22 -1.33 16 14 C -0.20 -8.64 9.99 22.41 0.22 -8.42 16 15 C 0.12 6.76 6.64 22.56 0.15 6.91 16 16 O -0.22 -14.30 9.76 -22.73 -0.22 -14.52 16 17 C -0.42 -26.50 9.44 67.92 0.64 -25.86 16 18 H 0.08 5.24 5.30 -2.91 -0.02 5.23 16 19 C -0.01 -0.86 5.49 84.83 0.47 -0.39 16 20 N -0.91 -58.05 13.67 21.61 0.30 -57.76 16 21 Si 1.01 46.62 29.55 68.60 2.03 48.65 16 22 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.25 -10.79 7.11 99.48 0.71 -10.09 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 25 C -0.25 -12.86 7.99 22.48 0.18 -12.68 16 26 N -0.32 -10.83 11.77 -47.39 -0.56 -11.39 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.14 1.13 8.07 -2.39 -0.02 1.11 16 32 H 0.22 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.17 2.12 8.12 -2.39 -0.02 2.10 16 35 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 37 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.13 5.39 8.06 -2.91 -0.02 5.37 16 39 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 40 H 0.10 5.69 5.72 -2.91 -0.02 5.67 16 Total: -1.00 -93.31 355.64 7.47 -85.84 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 1.06 Total: 21.27 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 5.77 Total: -27.66 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.54 Total: -79.70 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: 0.15 Total: -48.40 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -93.31 7.47 -85.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844578265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.469 kcal (2) G-P(sol) polarization free energy of solvation -93.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds