Wall clock time and date at job start Tue Mar 31 2020 10:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47285 * 2 1 4 4 C 1.53000 * 109.46977 * 239.99760 * 2 1 3 5 5 C 1.50693 * 109.47303 * 65.00271 * 4 2 1 6 6 O 1.20836 * 120.00077 * 359.97438 * 5 4 2 7 7 O 1.34264 * 120.00128 * 180.02562 * 5 4 2 8 8 C 1.35929 * 117.00288 * 175.01496 * 7 5 4 9 9 C 1.38824 * 120.01578 * 255.02213 * 8 7 5 10 10 C 1.38190 * 120.07762 * 179.72099 * 9 8 7 11 11 C 1.38157 * 120.12233 * 0.54465 * 10 9 8 12 12 C 1.38890 * 120.04060 * 359.72777 * 11 10 9 13 13 O 1.35759 * 120.03864 * 179.97438 * 12 11 10 14 14 C 1.34834 * 116.99907 * 185.61835 * 13 12 11 15 15 H 1.07998 * 119.99873 * 354.94110 * 14 13 12 16 16 C 1.38648 * 119.99981 * 174.94136 * 14 13 12 17 17 N 1.31557 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99867 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47100 * 90.00423 * 18 16 14 20 20 H 1.48506 * 109.47155 * 209.99747 * 18 16 14 21 21 H 1.48501 * 109.47502 * 329.99866 * 18 16 14 22 22 C 1.38569 * 120.02265 * 75.28894 * 8 7 5 23 23 N 1.46499 * 109.46898 * 119.99904 * 2 1 3 24 24 C 1.36882 * 126.39885 * 239.71403 * 23 2 1 25 25 C 1.34665 * 106.81759 * 179.84036 * 24 23 2 26 26 N 1.34122 * 108.02440 * 0.42073 * 25 24 23 27 27 C 1.30506 * 109.25452 * 359.72974 * 26 25 24 28 28 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47424 * 300.00415 * 1 2 3 30 30 H 1.09005 * 109.47143 * 60.00249 * 1 2 3 31 31 H 1.09004 * 109.46825 * 185.00251 * 4 2 1 32 32 H 1.09000 * 109.47343 * 304.99997 * 4 2 1 33 33 H 1.07995 * 119.96279 * 359.96762 * 9 8 7 34 34 H 1.07998 * 119.93842 * 180.25272 * 10 9 8 35 35 H 1.08003 * 119.97458 * 179.70385 * 11 10 9 36 36 H 0.96998 * 120.00219 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.06331 * 359.97438 * 22 8 7 38 38 H 1.08007 * 126.58832 * 359.97438 * 24 23 2 39 39 H 1.08003 * 125.98860 * 180.11446 * 25 24 23 40 40 H 1.08001 * 125.65412 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 8 1.0133 1.0831 -2.3638 7 8 1.9832 -0.3904 -3.6955 8 6 1.5045 0.3012 -4.7633 9 6 0.4614 -0.2195 -5.5169 10 6 -0.0301 0.4851 -6.5993 11 6 0.5223 1.7043 -6.9416 12 6 1.5698 2.2274 -6.1945 13 8 2.1129 3.4252 -6.5312 14 6 3.2000 3.8207 -5.8385 15 1 3.5512 3.2333 -5.0030 16 6 3.8671 4.9815 -6.1990 17 7 3.4397 5.6967 -7.2170 18 14 5.3728 5.5298 -5.2390 19 1 6.5908 4.9366 -5.8473 20 1 5.4718 7.0111 -5.2770 21 1 5.2530 5.0777 -3.8295 22 6 2.0611 1.5237 -5.1036 23 7 2.0183 -0.6906 1.1962 24 6 2.8129 -0.1570 2.1747 25 6 3.0183 -1.1294 3.0833 26 7 2.3745 -2.2297 2.6663 27 6 1.7732 -1.9743 1.5365 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7199 -1.2951 33 1 0.0308 -1.1746 -5.2546 34 1 -0.8444 0.0798 -7.1815 35 1 0.1394 2.2508 -7.7909 36 1 3.9066 6.5086 -7.4694 37 1 2.8753 1.9285 -4.5208 38 1 3.1990 0.8511 2.2121 39 1 3.6033 -1.0406 3.9868 40 1 1.1786 -2.6737 0.9677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844580028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:20 Heat of formation + Delta-G solvation = -9.023561 kcal Electronic energy + Delta-G solvation = -25351.832553 eV Core-core repulsion = 21520.574015 eV Total energy + Delta-G solvation = -3831.258538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.36553 -41.14705 -39.00832 -37.63683 -36.03519 -35.67327 -32.39698 -31.44228 -30.03250 -29.46897 -29.11094 -28.41701 -25.52788 -24.24076 -22.80003 -21.78932 -21.58383 -20.87825 -20.17751 -18.49543 -18.17126 -17.59659 -16.76517 -16.44246 -16.09900 -15.44717 -15.27470 -15.10021 -14.61992 -14.36436 -14.10878 -14.01139 -13.76309 -13.64987 -13.57366 -13.31034 -13.04171 -12.81371 -12.38090 -11.97223 -11.92021 -11.73063 -11.60271 -11.40025 -11.14380 -10.95832 -10.59595 -10.55103 -10.41474 -10.19040 -9.92498 -9.62835 -8.95930 -8.74963 -8.28965 -7.45791 -6.56434 -4.16212 1.57545 1.83159 2.03944 2.10230 2.34641 2.96959 3.01668 3.06435 3.08193 3.11508 3.86980 3.94935 4.25325 4.34474 4.47425 4.54986 4.64170 4.82213 4.93538 4.95777 5.05122 5.12239 5.20920 5.33456 5.42222 5.49122 5.50206 5.66073 5.81273 5.89642 6.03722 6.05481 6.17035 6.44896 6.50559 6.74242 6.86712 6.92639 6.98153 7.02593 7.22910 7.45264 7.84896 7.86201 7.94141 8.88385 9.53799 10.60900 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003336 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.872523 B = 8391.500904 C =10115.445898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.144 3.856 3 H 0.114 0.886 4 C -0.123 4.123 5 C 0.460 3.540 6 O -0.479 6.479 7 O -0.292 6.292 8 C 0.118 3.882 9 C -0.211 4.211 10 C -0.065 4.065 11 C -0.185 4.185 12 C 0.163 3.837 13 O -0.169 6.169 14 C -0.394 4.394 15 H 0.091 0.909 16 C 0.042 3.958 17 N -0.858 5.858 18 Si 0.941 3.059 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.268 1.268 22 C -0.229 4.229 23 N -0.454 5.454 24 C -0.052 4.052 25 C -0.033 4.033 26 N -0.496 5.496 27 C 0.181 3.819 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.272 0.728 37 H 0.132 0.868 38 H 0.174 0.826 39 H 0.169 0.831 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 -12.254 12.945 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.041 3.959 3 H 0.132 0.868 4 C -0.162 4.162 5 C 0.302 3.698 6 O -0.364 6.364 7 O -0.207 6.207 8 C 0.077 3.923 9 C -0.231 4.231 10 C -0.083 4.083 11 C -0.204 4.204 12 C 0.109 3.891 13 O -0.072 6.072 14 C -0.470 4.470 15 H 0.108 0.892 16 C -0.163 4.163 17 N -0.492 5.492 18 Si 0.765 3.235 19 H -0.197 1.197 20 H -0.200 1.200 21 H -0.192 1.192 22 C -0.249 4.249 23 N -0.137 5.137 24 C -0.185 4.185 25 C -0.180 4.180 26 N -0.214 5.214 27 C -0.101 4.101 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.192 0.808 39 H 0.186 0.814 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.505 -12.175 12.968 18.130 hybrid contribution 0.896 1.119 0.033 1.434 sum -2.609 -11.056 13.002 17.265 Atomic orbital electron populations 1.22336 0.91986 1.03335 1.05094 1.21208 0.96556 0.97131 0.80999 0.86785 1.21656 1.05115 1.00580 0.88828 1.23421 0.77068 0.84517 0.84754 1.90734 1.35948 1.23260 1.86460 1.84499 1.67680 1.54801 1.13720 1.18195 0.95394 0.92135 0.86557 1.20484 0.99481 1.02199 1.00898 1.20497 0.98298 0.93660 0.95833 1.20356 0.99913 0.97606 1.02549 1.19119 0.92374 0.86057 0.91572 1.84005 1.40585 1.27442 1.55125 1.21308 1.03790 1.08955 1.12971 0.89189 1.25295 0.98941 0.95337 0.96706 1.70028 1.39222 1.14864 1.25094 0.85709 0.80045 0.78374 0.79328 1.19680 1.20032 1.19203 1.21181 1.05566 0.95972 1.02183 1.45713 1.37997 1.11559 1.18410 1.22831 1.01941 1.01540 0.92180 1.22305 1.04732 0.89604 1.01385 1.70310 1.12423 1.28176 1.10505 1.24920 1.03909 0.85303 0.95995 0.91794 0.91357 0.88366 0.86662 0.86637 0.86709 0.85902 0.85799 0.91800 0.85070 0.80850 0.81389 0.78146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 8.99 37.16 0.33 -1.13 16 2 C 0.14 1.27 2.70 -67.93 -0.18 1.08 16 3 H 0.11 1.08 7.90 -51.93 -0.41 0.67 16 4 C -0.12 -1.09 5.28 -27.89 -0.15 -1.24 16 5 C 0.46 6.38 7.54 36.00 0.27 6.65 16 6 O -0.48 -8.07 13.40 -18.76 -0.25 -8.33 16 7 O -0.29 -4.71 10.03 -23.63 -0.24 -4.94 16 8 C 0.12 2.24 5.18 -39.24 -0.20 2.03 16 9 C -0.21 -3.61 9.99 -39.38 -0.39 -4.00 16 10 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16 11 C -0.18 -3.75 9.99 -39.37 -0.39 -4.14 16 12 C 0.16 3.89 6.65 -39.13 -0.26 3.63 16 13 O -0.17 -4.73 9.76 0.01 0.00 -4.73 16 14 C -0.39 -10.91 9.49 30.88 0.29 -10.62 16 15 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 16 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 17 N -0.86 -24.68 13.67 55.48 0.76 -23.93 16 18 Si 0.94 20.24 29.55 -169.99 -5.02 15.21 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 C -0.23 -5.07 8.58 -39.25 -0.34 -5.40 16 23 N -0.45 -4.10 2.62 -111.45 -0.29 -4.39 16 24 C -0.05 -0.48 11.54 -16.56 -0.19 -0.67 16 25 C -0.03 -0.33 11.87 -17.82 -0.21 -0.54 16 26 N -0.50 -5.87 11.25 -14.66 -0.16 -6.03 16 27 C 0.18 1.71 11.65 -90.37 -1.05 0.66 16 28 H 0.06 0.45 7.95 -51.93 -0.41 0.04 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 1.06 5.96 -51.93 -0.31 0.75 16 31 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.12 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.13 2.99 5.64 -52.49 -0.30 2.69 16 38 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.17 1.34 8.06 -52.48 -0.42 0.91 16 40 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -33.36 350.23 -7.54 -40.90 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.64 Total: 5.10 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -2.97 Total: -14.14 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.30 Total: -34.35 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.49 Total: -18.00 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.36 -7.54 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844580028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.873 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds