Wall clock time and date at job start Tue Mar 31 2020 10:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47285 * 2 1 4 4 C 1.53000 * 109.46977 * 239.99760 * 2 1 3 5 5 C 1.50693 * 109.47303 * 65.00271 * 4 2 1 6 6 O 1.20836 * 120.00077 * 359.97438 * 5 4 2 7 7 O 1.34264 * 120.00128 * 180.02562 * 5 4 2 8 8 C 1.35929 * 117.00288 * 175.01496 * 7 5 4 9 9 C 1.38824 * 120.01578 * 255.02213 * 8 7 5 10 10 C 1.38190 * 120.07762 * 179.72099 * 9 8 7 11 11 C 1.38157 * 120.12233 * 0.54465 * 10 9 8 12 12 C 1.38890 * 120.04060 * 359.72777 * 11 10 9 13 13 O 1.35759 * 120.03864 * 179.97438 * 12 11 10 14 14 C 1.34834 * 116.99907 * 185.61835 * 13 12 11 15 15 H 1.07998 * 119.99873 * 354.94110 * 14 13 12 16 16 C 1.38648 * 119.99981 * 174.94136 * 14 13 12 17 17 N 1.31557 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99867 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47100 * 90.00423 * 18 16 14 20 20 H 1.48506 * 109.47155 * 209.99747 * 18 16 14 21 21 H 1.48501 * 109.47502 * 329.99866 * 18 16 14 22 22 C 1.38569 * 120.02265 * 75.28894 * 8 7 5 23 23 N 1.46499 * 109.46898 * 119.99904 * 2 1 3 24 24 C 1.36882 * 126.39885 * 239.71403 * 23 2 1 25 25 C 1.34665 * 106.81759 * 179.84036 * 24 23 2 26 26 N 1.34122 * 108.02440 * 0.42073 * 25 24 23 27 27 C 1.30506 * 109.25452 * 359.72974 * 26 25 24 28 28 H 1.08999 * 109.47285 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47424 * 300.00415 * 1 2 3 30 30 H 1.09005 * 109.47143 * 60.00249 * 1 2 3 31 31 H 1.09004 * 109.46825 * 185.00251 * 4 2 1 32 32 H 1.09000 * 109.47343 * 304.99997 * 4 2 1 33 33 H 1.07995 * 119.96279 * 359.96762 * 9 8 7 34 34 H 1.07998 * 119.93842 * 180.25272 * 10 9 8 35 35 H 1.08003 * 119.97458 * 179.70385 * 11 10 9 36 36 H 0.96998 * 120.00219 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.06331 * 359.97438 * 22 8 7 38 38 H 1.08007 * 126.58832 * 359.97438 * 24 23 2 39 39 H 1.08003 * 125.98860 * 180.11446 * 25 24 23 40 40 H 1.08001 * 125.65412 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 8 1.0133 1.0831 -2.3638 7 8 1.9832 -0.3904 -3.6955 8 6 1.5045 0.3012 -4.7633 9 6 0.4614 -0.2195 -5.5169 10 6 -0.0301 0.4851 -6.5993 11 6 0.5223 1.7043 -6.9416 12 6 1.5698 2.2274 -6.1945 13 8 2.1129 3.4252 -6.5312 14 6 3.2000 3.8207 -5.8385 15 1 3.5512 3.2333 -5.0030 16 6 3.8671 4.9815 -6.1990 17 7 3.4397 5.6967 -7.2170 18 14 5.3728 5.5298 -5.2390 19 1 6.5908 4.9366 -5.8473 20 1 5.4718 7.0111 -5.2770 21 1 5.2530 5.0777 -3.8295 22 6 2.0611 1.5237 -5.1036 23 7 2.0183 -0.6906 1.1962 24 6 2.8129 -0.1570 2.1747 25 6 3.0183 -1.1294 3.0833 26 7 2.3745 -2.2297 2.6663 27 6 1.7732 -1.9743 1.5365 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7199 -1.2951 33 1 0.0308 -1.1746 -5.2546 34 1 -0.8444 0.0798 -7.1815 35 1 0.1394 2.2508 -7.7909 36 1 3.9066 6.5086 -7.4694 37 1 2.8753 1.9285 -4.5208 38 1 3.1990 0.8511 2.2121 39 1 3.6033 -1.0406 3.9868 40 1 1.1786 -2.6737 0.9677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844580028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:19 Heat of formation + Delta-G solvation = -27.557807 kcal Electronic energy + Delta-G solvation = -25352.636258 eV Core-core repulsion = 21520.574015 eV Total energy + Delta-G solvation = -3832.062243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.09634 -42.39986 -40.64051 -38.98537 -37.48941 -36.65184 -34.36180 -32.28869 -31.39778 -30.71253 -30.18873 -29.33272 -27.46372 -25.24369 -23.94170 -23.36377 -22.35121 -22.05954 -21.01859 -20.13998 -19.63215 -18.75142 -17.83973 -17.66498 -17.45551 -16.88606 -16.33206 -16.22202 -16.07580 -15.74119 -15.57674 -15.00246 -14.90502 -14.71502 -14.64596 -14.33612 -14.26736 -13.98985 -13.75100 -13.31942 -13.12297 -12.86495 -12.76625 -12.66933 -12.52775 -12.37279 -12.20324 -11.93456 -11.79285 -11.47001 -10.94187 -10.87843 -10.66782 -9.82533 -9.45372 -9.17281 -8.54950 -6.24381 0.11286 0.53826 0.94226 1.10587 1.29391 1.37021 1.42528 1.46509 2.02904 2.11052 2.23977 2.71572 3.03777 3.19497 3.36222 3.51573 3.62501 3.87424 3.97323 3.98187 4.01919 4.17960 4.28606 4.30381 4.38742 4.52198 4.58352 4.64399 4.70791 4.80956 4.83071 4.92756 4.99668 5.11175 5.32931 5.35521 5.43150 5.50141 5.53753 5.81209 5.92063 5.97511 6.25026 6.66005 6.88946 7.14255 7.64749 8.67489 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003336 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.872523 B = 8391.500904 C =10115.445898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 H 0.103 0.897 4 C -0.110 4.110 5 C 0.461 3.539 6 O -0.512 6.512 7 O -0.292 6.292 8 C 0.115 3.885 9 C -0.188 4.188 10 C -0.048 4.048 11 C -0.195 4.195 12 C 0.126 3.874 13 O -0.222 6.222 14 C -0.417 4.417 15 H 0.093 0.907 16 C -0.016 4.016 17 N -0.914 5.914 18 Si 1.015 2.985 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.258 1.258 22 C -0.247 4.247 23 N -0.452 5.452 24 C -0.057 4.057 25 C -0.051 4.051 26 N -0.534 5.534 27 C 0.182 3.818 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.175 0.825 35 H 0.128 0.872 36 H 0.275 0.725 37 H 0.111 0.889 38 H 0.192 0.808 39 H 0.181 0.819 40 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 -15.235 14.208 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.121 0.879 4 C -0.148 4.148 5 C 0.305 3.695 6 O -0.399 6.399 7 O -0.207 6.207 8 C 0.074 3.926 9 C -0.207 4.207 10 C -0.066 4.066 11 C -0.215 4.215 12 C 0.075 3.925 13 O -0.128 6.128 14 C -0.493 4.493 15 H 0.110 0.890 16 C -0.215 4.215 17 N -0.551 5.551 18 Si 0.833 3.167 19 H -0.184 1.184 20 H -0.190 1.190 21 H -0.182 1.182 22 C -0.267 4.267 23 N -0.135 5.135 24 C -0.189 4.189 25 C -0.198 4.198 26 N -0.253 5.253 27 C -0.100 4.100 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.146 0.854 32 H 0.169 0.831 33 H 0.178 0.822 34 H 0.192 0.808 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.209 0.791 39 H 0.198 0.802 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.215 -15.213 14.257 21.271 hybrid contribution 0.890 1.725 -0.282 1.961 sum -3.325 -13.487 13.975 19.705 Atomic orbital electron populations 1.22265 0.91735 1.04402 1.03871 1.21088 0.96641 0.96595 0.80949 0.87932 1.21757 1.06031 1.01191 0.85807 1.24362 0.75969 0.84325 0.84835 1.90745 1.37613 1.24929 1.86581 1.84518 1.68002 1.54178 1.13961 1.18349 0.95396 0.91052 0.87806 1.21104 0.97281 1.03181 0.99144 1.21081 0.98383 0.91646 0.95483 1.20718 0.99135 0.99097 1.02513 1.19719 0.93766 0.85877 0.93155 1.83964 1.41887 1.30028 1.56930 1.21691 1.04471 1.09680 1.13474 0.88982 1.26531 1.02159 0.95017 0.97776 1.70154 1.41483 1.15907 1.27559 0.84656 0.75782 0.78199 0.78017 1.18414 1.19041 1.18208 1.21168 1.05856 0.97672 1.01988 1.45696 1.37964 1.11571 1.18267 1.23171 1.01657 1.02208 0.91907 1.22634 1.05180 0.89668 1.02277 1.70298 1.13803 1.29227 1.11930 1.25518 1.03283 0.85624 0.95547 0.89586 0.91577 0.90523 0.85389 0.83075 0.82205 0.80789 0.85375 0.91539 0.87133 0.79128 0.80212 0.75178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 8.99 71.98 0.65 -1.82 16 2 C 0.15 2.28 2.70 44.99 0.12 2.41 16 3 H 0.10 1.83 7.90 -2.39 -0.02 1.81 16 4 C -0.11 -1.59 5.28 29.85 0.16 -1.43 16 5 C 0.46 11.83 7.54 71.23 0.54 12.36 16 6 O -0.51 -16.93 13.40 21.93 0.29 -16.63 16 7 O -0.29 -8.71 10.03 4.49 0.04 -8.66 16 8 C 0.11 4.18 5.18 22.49 0.12 4.29 16 9 C -0.19 -5.65 9.99 22.40 0.22 -5.43 16 10 C -0.05 -1.46 10.03 22.24 0.22 -1.23 16 11 C -0.20 -7.87 9.99 22.41 0.22 -7.64 16 12 C 0.13 6.25 6.65 22.56 0.15 6.40 16 13 O -0.22 -13.31 9.76 -22.89 -0.22 -13.54 16 14 C -0.42 -24.55 9.49 67.92 0.64 -23.91 16 15 H 0.09 5.12 5.20 -2.91 -0.02 5.10 16 16 C -0.02 -0.93 5.49 84.83 0.47 -0.46 16 17 N -0.91 -55.52 13.67 21.61 0.30 -55.22 16 18 Si 1.01 42.87 29.55 68.60 2.03 44.90 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 C -0.25 -11.21 8.58 22.48 0.19 -11.02 16 23 N -0.45 -7.00 2.62 -506.53 -1.33 -8.33 16 24 C -0.06 -0.94 11.54 83.09 0.96 0.02 16 25 C -0.05 -0.97 11.87 83.52 0.99 0.02 16 26 N -0.53 -11.65 11.25 -200.31 -2.25 -13.90 16 27 C 0.18 2.91 11.65 180.26 2.10 5.01 16 28 H 0.09 0.89 7.95 -2.39 -0.02 0.87 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.54 5.96 -2.38 -0.01 1.52 16 31 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.15 1.17 8.08 -2.39 -0.02 1.15 16 33 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.11 5.35 5.64 -2.91 -0.02 5.33 16 38 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.23 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -79.16 350.23 7.68 -71.48 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.07 Total: 22.34 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 7.75 Total: -22.43 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -3.28 Total: -77.45 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: 0.12 Total: -38.83 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -79.16 7.68 -71.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844580028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.923 kcal (2) G-P(sol) polarization free energy of solvation -79.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds