Wall clock time and date at job start Tue Mar 31 2020 11:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.33877 * 122.76017 * 2 1 4 4 O 1.21222 * 125.39969 * 359.97438 * 3 2 1 5 5 C 1.51324 * 109.20143 * 179.84515 * 3 2 1 6 6 C 1.54221 * 103.55490 * 0.38370 * 5 3 2 7 7 H 1.08998 * 110.74073 * 241.19652 * 6 5 3 8 8 N 1.46503 * 110.60376 * 118.29652 * 6 5 3 9 9 C 1.34782 * 119.99564 * 159.40932 * 8 6 5 10 10 O 1.21275 * 120.00282 * 359.97438 * 9 8 6 11 11 C 1.50707 * 119.99541 * 179.97438 * 9 8 6 12 12 C 1.50697 * 109.46858 * 179.97438 * 11 9 8 13 13 C 1.37638 * 120.12839 * 264.99775 * 12 11 9 14 14 C 1.38611 * 120.24674 * 180.02562 * 13 12 11 15 15 C 1.38659 * 120.50204 * 359.97438 * 14 13 12 16 16 C 1.37594 * 120.24920 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.12651 * 84.72970 * 12 11 9 18 18 C 1.41394 * 120.24610 * 359.97438 * 17 12 11 19 19 H 1.08001 * 119.99994 * 329.70770 * 18 17 12 20 20 C 1.39949 * 120.00006 * 149.70555 * 18 17 12 21 21 N 1.30820 * 119.99771 * 162.01582 * 20 18 17 22 22 Si 1.86790 * 120.00014 * 342.01691 * 20 18 17 23 23 H 1.48495 * 109.47434 * 95.39955 * 22 20 18 24 24 H 1.48500 * 109.47205 * 215.40056 * 22 20 18 25 25 H 1.48506 * 109.47365 * 335.39700 * 22 20 18 26 26 C 1.33878 * 122.75846 * 180.29187 * 2 1 3 27 27 O 1.21217 * 125.40132 * 359.97350 * 26 2 1 28 28 H 1.08998 * 109.47022 * 269.71017 * 1 2 3 29 29 H 1.09000 * 109.47146 * 29.71076 * 1 2 3 30 30 H 1.08995 * 109.46853 * 149.71393 * 1 2 3 31 31 H 1.09001 * 110.79168 * 241.77291 * 5 3 2 32 32 H 1.09001 * 110.54787 * 118.87470 * 5 3 2 33 33 H 0.96991 * 120.00433 * 339.40917 * 8 6 5 34 34 H 1.08998 * 109.46979 * 300.00082 * 11 9 8 35 35 H 1.08996 * 109.47130 * 60.00143 * 11 9 8 36 36 H 1.08000 * 119.87286 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.74767 * 179.97438 * 14 13 12 38 38 H 1.08010 * 119.86925 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.12726 * 179.97438 * 16 15 14 40 40 H 0.97001 * 120.00076 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1895 1.1258 0.0000 4 8 1.7385 2.2510 -0.0004 5 6 3.6606 0.7711 0.0039 6 6 3.6605 -0.7711 -0.0039 7 1 4.1482 -1.1617 0.8892 8 7 4.3152 -1.2806 -1.2115 9 6 4.7934 -2.5405 -1.2382 10 8 4.6821 -3.2521 -0.2625 11 6 5.4663 -3.0648 -2.4805 12 6 5.9069 -4.4874 -2.2507 13 6 7.1930 -4.7545 -1.8395 14 6 7.6011 -6.0621 -1.6279 15 6 6.7210 -7.1150 -1.8268 16 6 5.4306 -6.8715 -2.2378 17 6 5.0036 -5.5475 -2.4503 18 6 3.6781 -5.2849 -2.8668 19 1 3.1951 -4.3622 -2.5810 20 6 2.9921 -6.2207 -3.6492 21 7 1.6885 -6.1643 -3.7436 22 14 3.9378 -7.5501 -4.5588 23 1 3.9589 -8.7898 -3.7416 24 1 3.2766 -7.8260 -5.8596 25 1 5.3297 -7.0915 -4.7986 26 6 2.1895 -1.1258 -0.0057 27 8 1.7385 -2.2510 -0.0110 28 1 -0.3633 -0.0052 1.0276 29 1 -0.3633 0.8926 -0.5093 30 1 -0.3633 -0.8874 -0.5183 31 1 4.1477 1.1502 0.9023 32 1 4.1501 1.1592 -0.8894 33 1 4.4045 -0.7114 -1.9917 34 1 4.7657 -3.0312 -3.3149 35 1 6.3352 -2.4484 -2.7107 36 1 7.8867 -3.9420 -1.6811 37 1 8.6123 -6.2625 -1.3056 38 1 7.0500 -8.1300 -1.6593 39 1 4.7469 -7.6931 -2.3926 40 1 1.2130 -6.8127 -4.2862 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848047890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:27 Heat of formation + Delta-G solvation = -72.082675 kcal Electronic energy + Delta-G solvation = -26263.425652 eV Core-core repulsion = 22429.432665 eV Total energy + Delta-G solvation = -3833.992986 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.05987 -39.36456 -38.56477 -37.56589 -36.00637 -34.88619 -33.54694 -32.19600 -31.35864 -30.28308 -27.46933 -26.99205 -25.66676 -24.70496 -22.42777 -21.42305 -20.96121 -19.72646 -19.45984 -17.53461 -17.31419 -17.28350 -16.79803 -16.32480 -15.76734 -15.40299 -15.11691 -14.66683 -14.37166 -14.32726 -14.12630 -13.71589 -13.42317 -13.29289 -13.16921 -12.87505 -12.69929 -12.65676 -12.19099 -12.08712 -11.85782 -11.41611 -11.20161 -10.88623 -10.76758 -10.70325 -10.33552 -10.22556 -9.88693 -9.67884 -9.53484 -9.33990 -9.08720 -8.96963 -7.57160 -7.47183 -6.88486 -4.42873 1.35640 2.32078 2.44959 2.63305 2.75689 3.15366 3.19000 3.22619 3.34995 3.39994 3.86865 4.02149 4.05492 4.12085 4.55495 4.70740 5.03130 5.16325 5.18366 5.21027 5.33237 5.42129 5.51886 5.61806 5.84527 5.95354 6.09630 6.21195 6.27467 6.39324 6.59888 6.66039 6.75233 6.99143 7.15379 7.24518 7.44727 7.64594 7.69162 7.70581 7.79579 7.95382 8.18212 8.41824 8.67904 8.72819 8.87038 10.13459 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.004134 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.087169 B = 6771.463416 C = 7937.029223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.577 5.577 3 C 0.531 3.469 4 O -0.489 6.489 5 C -0.162 4.162 6 C 0.121 3.879 7 H 0.136 0.864 8 N -0.729 5.729 9 C 0.517 3.483 10 O -0.499 6.499 11 C -0.070 4.070 12 C -0.172 4.172 13 C -0.067 4.067 14 C -0.245 4.245 15 C -0.079 4.079 16 C -0.233 4.233 17 C 0.111 3.889 18 C -0.441 4.441 19 H 0.090 0.910 20 C 0.084 3.916 21 N -0.806 5.806 22 Si 0.910 3.090 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.244 1.244 26 C 0.502 3.498 27 O -0.434 6.434 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.403 0.597 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 13.602 2.991 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.323 5.323 3 C 0.320 3.680 4 O -0.361 6.361 5 C -0.202 4.202 6 C 0.011 3.989 7 H 0.154 0.846 8 N -0.387 5.387 9 C 0.305 3.695 10 O -0.369 6.369 11 C -0.110 4.110 12 C -0.173 4.173 13 C -0.085 4.085 14 C -0.264 4.264 15 C -0.097 4.097 16 C -0.253 4.253 17 C 0.108 3.892 18 C -0.469 4.469 19 H 0.108 0.892 20 C -0.135 4.135 21 N -0.430 5.430 22 Si 0.737 3.263 23 H -0.198 1.198 24 H -0.220 1.220 25 H -0.167 1.167 26 C 0.286 3.714 27 O -0.299 6.299 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.238 0.762 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.996 12.919 3.627 13.566 hybrid contribution -0.055 -0.416 -0.678 0.798 sum 1.941 12.503 2.948 12.992 Atomic orbital electron populations 1.21937 0.77155 1.04768 1.03603 1.46754 1.09757 1.09393 1.66359 1.20658 0.89858 0.83760 0.73765 1.90769 1.77802 1.21254 1.46275 1.22798 0.94453 0.94925 1.08048 1.21452 0.90426 0.93046 0.93997 0.84642 1.46058 1.61550 1.16077 1.15030 1.21343 0.77522 0.79729 0.90944 1.90734 1.54610 1.55336 1.36266 1.20273 1.00052 0.95413 0.95229 1.19022 0.93751 0.92174 1.12400 1.20412 0.94933 0.95469 0.97712 1.20314 0.98744 0.92916 1.14413 1.20600 0.93929 0.97008 0.98180 1.20998 0.96433 0.96567 1.11259 1.17473 0.92258 0.90563 0.88947 1.19439 0.95385 1.04897 1.27211 0.89239 1.26178 0.94537 0.97179 0.95602 1.69729 1.08272 1.33594 1.31450 0.86344 0.81691 0.80559 0.77739 1.19768 1.22030 1.16666 1.21562 0.90414 0.84063 0.75336 1.90910 1.77019 1.20804 1.41174 0.91002 0.89588 0.89251 0.85115 0.85526 0.76187 0.88048 0.90007 0.89083 0.89045 0.89053 0.88372 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.59 59.85 0.63 1.33 16 2 N -0.58 -6.88 2.95 -122.72 -0.36 -7.24 16 3 C 0.53 5.56 8.08 -11.08 -0.09 5.47 16 4 O -0.49 -6.29 17.47 5.61 0.10 -6.20 16 5 C -0.16 -1.16 6.79 -26.94 -0.18 -1.34 16 6 C 0.12 1.39 3.38 -68.14 -0.23 1.16 16 7 H 0.14 1.60 7.68 -51.93 -0.40 1.20 16 8 N -0.73 -9.25 5.15 -54.01 -0.28 -9.53 16 9 C 0.52 9.37 7.41 -10.98 -0.08 9.28 16 10 O -0.50 -11.48 15.75 5.56 0.09 -11.39 16 11 C -0.07 -1.25 5.19 -29.03 -0.15 -1.41 16 12 C -0.17 -3.86 4.43 -103.91 -0.46 -4.32 16 13 C -0.07 -1.40 9.66 -39.66 -0.38 -1.79 16 14 C -0.24 -5.20 10.05 -39.29 -0.39 -5.60 16 15 C -0.08 -1.78 10.02 -39.66 -0.40 -2.18 16 16 C -0.23 -5.86 7.17 -38.87 -0.28 -6.14 16 17 C 0.11 2.84 5.10 -106.82 -0.54 2.29 16 18 C -0.44 -12.00 8.56 -37.74 -0.32 -12.33 16 19 H 0.09 2.60 6.99 -52.49 -0.37 2.23 16 20 C 0.08 2.23 5.41 -17.34 -0.09 2.14 16 21 N -0.81 -22.00 13.93 55.55 0.77 -21.23 16 22 Si 0.91 21.05 24.52 -169.99 -4.17 16.88 16 23 H -0.27 -6.21 6.71 56.52 0.38 -5.83 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.24 -5.69 6.86 56.52 0.39 -5.30 16 26 C 0.50 7.41 7.71 -11.08 -0.09 7.32 16 27 O -0.43 -8.84 17.48 5.61 0.10 -8.74 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.79 7.82 -51.93 -0.41 0.38 16 30 H 0.09 1.02 7.83 -51.93 -0.41 0.61 16 31 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.13 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.40 3.61 8.31 -40.82 -0.34 3.27 16 34 H 0.10 1.84 7.15 -51.93 -0.37 1.47 16 35 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 36 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.10 2.47 4.74 -52.49 -0.25 2.22 16 40 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -36.06 342.45 -6.29 -42.36 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.64 Total: 6.03 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -3.06 Total: -6.11 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.13 Total: -38.00 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: 0.28 Total: -26.33 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.17 Total: 16.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.06 -6.29 -42.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848047890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.726 kcal (2) G-P(sol) polarization free energy of solvation -36.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds