Wall clock time and date at job start Tue Mar 31 2020 11:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.33877 * 122.76017 * 2 1 4 4 O 1.21222 * 125.39969 * 359.97438 * 3 2 1 5 5 C 1.51324 * 109.20143 * 179.84515 * 3 2 1 6 6 C 1.54221 * 103.55490 * 0.38370 * 5 3 2 7 7 H 1.08998 * 110.74073 * 241.19652 * 6 5 3 8 8 N 1.46503 * 110.60376 * 118.29652 * 6 5 3 9 9 C 1.34782 * 119.99564 * 159.40932 * 8 6 5 10 10 O 1.21275 * 120.00282 * 359.97438 * 9 8 6 11 11 C 1.50707 * 119.99541 * 179.97438 * 9 8 6 12 12 C 1.50697 * 109.46858 * 179.97438 * 11 9 8 13 13 C 1.37638 * 120.12839 * 264.99775 * 12 11 9 14 14 C 1.38611 * 120.24674 * 180.02562 * 13 12 11 15 15 C 1.38659 * 120.50204 * 359.97438 * 14 13 12 16 16 C 1.37594 * 120.24920 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.12651 * 84.72970 * 12 11 9 18 18 C 1.41394 * 120.24610 * 359.97438 * 17 12 11 19 19 H 1.08001 * 119.99994 * 329.70770 * 18 17 12 20 20 C 1.39949 * 120.00006 * 149.70555 * 18 17 12 21 21 N 1.30820 * 119.99771 * 162.01582 * 20 18 17 22 22 Si 1.86790 * 120.00014 * 342.01691 * 20 18 17 23 23 H 1.48495 * 109.47434 * 95.39955 * 22 20 18 24 24 H 1.48500 * 109.47205 * 215.40056 * 22 20 18 25 25 H 1.48506 * 109.47365 * 335.39700 * 22 20 18 26 26 C 1.33878 * 122.75846 * 180.29187 * 2 1 3 27 27 O 1.21217 * 125.40132 * 359.97350 * 26 2 1 28 28 H 1.08998 * 109.47022 * 269.71017 * 1 2 3 29 29 H 1.09000 * 109.47146 * 29.71076 * 1 2 3 30 30 H 1.08995 * 109.46853 * 149.71393 * 1 2 3 31 31 H 1.09001 * 110.79168 * 241.77291 * 5 3 2 32 32 H 1.09001 * 110.54787 * 118.87470 * 5 3 2 33 33 H 0.96991 * 120.00433 * 339.40917 * 8 6 5 34 34 H 1.08998 * 109.46979 * 300.00082 * 11 9 8 35 35 H 1.08996 * 109.47130 * 60.00143 * 11 9 8 36 36 H 1.08000 * 119.87286 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.74767 * 179.97438 * 14 13 12 38 38 H 1.08010 * 119.86925 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.12726 * 179.97438 * 16 15 14 40 40 H 0.97001 * 120.00076 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1895 1.1258 0.0000 4 8 1.7385 2.2510 -0.0004 5 6 3.6606 0.7711 0.0039 6 6 3.6605 -0.7711 -0.0039 7 1 4.1482 -1.1617 0.8892 8 7 4.3152 -1.2806 -1.2115 9 6 4.7934 -2.5405 -1.2382 10 8 4.6821 -3.2521 -0.2625 11 6 5.4663 -3.0648 -2.4805 12 6 5.9069 -4.4874 -2.2507 13 6 7.1930 -4.7545 -1.8395 14 6 7.6011 -6.0621 -1.6279 15 6 6.7210 -7.1150 -1.8268 16 6 5.4306 -6.8715 -2.2378 17 6 5.0036 -5.5475 -2.4503 18 6 3.6781 -5.2849 -2.8668 19 1 3.1951 -4.3622 -2.5810 20 6 2.9921 -6.2207 -3.6492 21 7 1.6885 -6.1643 -3.7436 22 14 3.9378 -7.5501 -4.5588 23 1 3.9589 -8.7898 -3.7416 24 1 3.2766 -7.8260 -5.8596 25 1 5.3297 -7.0915 -4.7986 26 6 2.1895 -1.1258 -0.0057 27 8 1.7385 -2.2510 -0.0110 28 1 -0.3633 -0.0052 1.0276 29 1 -0.3633 0.8926 -0.5093 30 1 -0.3633 -0.8874 -0.5183 31 1 4.1477 1.1502 0.9023 32 1 4.1501 1.1592 -0.8894 33 1 4.4045 -0.7114 -1.9917 34 1 4.7657 -3.0312 -3.3149 35 1 6.3352 -2.4484 -2.7107 36 1 7.8867 -3.9420 -1.6811 37 1 8.6123 -6.2625 -1.3056 38 1 7.0500 -8.1300 -1.6593 39 1 4.7469 -7.6931 -2.3926 40 1 1.2130 -6.8127 -4.2862 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848047890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:27 Heat of formation + Delta-G solvation = -99.757400 kcal Electronic energy + Delta-G solvation = -26264.625718 eV Core-core repulsion = 22429.432665 eV Total energy + Delta-G solvation = -3835.193053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.07550 -40.76613 -39.77510 -39.21839 -37.15954 -36.02691 -35.46613 -33.66220 -32.57836 -32.11436 -28.86934 -27.97483 -27.00588 -26.33715 -23.47795 -23.14215 -22.38880 -21.13833 -20.65993 -19.23367 -18.59272 -18.36880 -17.97131 -17.53014 -17.45419 -16.70274 -16.40982 -16.07273 -15.92605 -15.46996 -15.37826 -15.26135 -14.85549 -14.73101 -14.48960 -14.22071 -13.86515 -13.75120 -13.61391 -13.59938 -13.10478 -12.94527 -12.68702 -12.66165 -12.47874 -12.05984 -11.97239 -11.51485 -11.39686 -11.33458 -10.95724 -10.93696 -10.83006 -10.18373 -9.36581 -9.25960 -8.84380 -6.42816 0.32201 0.81997 0.93997 1.26789 1.33777 1.40182 1.49256 1.53134 1.85526 2.13913 2.26678 2.67147 3.01479 3.15006 3.24396 3.57246 4.01063 4.11270 4.15187 4.30721 4.33680 4.34227 4.38458 4.48389 4.63036 4.64024 4.64532 4.71722 4.78343 4.96736 5.02438 5.20070 5.30415 5.40408 5.67847 5.71397 5.89925 5.99512 6.08902 6.18800 6.32493 6.48369 6.54892 6.64673 6.83123 6.94045 7.36730 8.23920 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.004134 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.087169 B = 6771.463416 C = 7937.029223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.579 5.579 3 C 0.534 3.466 4 O -0.507 6.507 5 C -0.135 4.135 6 C 0.121 3.879 7 H 0.136 0.864 8 N -0.708 5.708 9 C 0.518 3.482 10 O -0.556 6.556 11 C -0.073 4.073 12 C -0.173 4.173 13 C -0.074 4.074 14 C -0.229 4.229 15 C -0.093 4.093 16 C -0.259 4.259 17 C 0.083 3.917 18 C -0.467 4.467 19 H 0.052 0.948 20 C 0.044 3.956 21 N -0.857 5.857 22 Si 0.967 3.033 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.246 1.246 26 C 0.499 3.501 27 O -0.506 6.506 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.171 0.829 32 H 0.163 0.837 33 H 0.424 0.576 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.669 15.777 3.068 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.323 5.323 3 C 0.325 3.675 4 O -0.381 6.381 5 C -0.174 4.174 6 C 0.011 3.989 7 H 0.154 0.846 8 N -0.366 5.366 9 C 0.307 3.693 10 O -0.432 6.432 11 C -0.112 4.112 12 C -0.174 4.174 13 C -0.092 4.092 14 C -0.248 4.248 15 C -0.111 4.111 16 C -0.279 4.279 17 C 0.080 3.920 18 C -0.497 4.497 19 H 0.070 0.930 20 C -0.170 4.170 21 N -0.484 5.484 22 Si 0.791 3.209 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.170 1.170 26 C 0.286 3.714 27 O -0.376 6.376 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.188 0.812 32 H 0.181 0.819 33 H 0.263 0.737 34 H 0.111 0.889 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.104 0.896 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.787 15.193 3.672 16.667 hybrid contribution -1.076 -0.945 -0.561 1.538 sum 4.711 14.248 3.111 15.326 Atomic orbital electron populations 1.22043 0.76910 1.04633 1.04483 1.46874 1.10330 1.09391 1.65695 1.21182 0.91018 0.82758 0.72533 1.90778 1.78438 1.21752 1.47086 1.22898 0.92147 0.90695 1.11697 1.21634 0.87769 0.96192 0.93290 0.84623 1.45731 1.59778 1.14708 1.16384 1.21298 0.77237 0.80780 0.90025 1.90715 1.57113 1.57181 1.38200 1.20362 1.01982 0.94041 0.94836 1.19566 0.94051 0.93679 1.10150 1.20929 0.94869 0.96916 0.96481 1.20901 1.00029 0.92645 1.11222 1.20974 0.93132 0.99189 0.97783 1.21134 0.97794 0.96165 1.12762 1.17733 0.92256 0.92097 0.89875 1.19319 0.96757 1.04243 1.29395 0.92960 1.26851 0.95101 0.98965 0.96040 1.69784 1.09462 1.35486 1.33677 0.85472 0.80226 0.78136 0.77079 1.19719 1.20559 1.16951 1.22183 0.92170 0.83505 0.73556 1.90886 1.78431 1.23580 1.44665 0.89717 0.88049 0.91009 0.81171 0.81926 0.73697 0.88940 0.84752 0.84752 0.85263 0.86326 0.89612 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.30 10.59 127.77 1.35 2.65 16 2 N -0.58 -13.57 2.95 -780.02 -2.30 -15.88 16 3 C 0.53 9.84 8.08 88.00 0.71 10.55 16 4 O -0.51 -11.75 17.47 -2.85 -0.05 -11.80 16 5 C -0.14 -1.35 6.79 30.46 0.21 -1.15 16 6 C 0.12 2.56 3.38 44.85 0.15 2.71 16 7 H 0.14 3.01 7.68 -2.39 -0.02 2.99 16 8 N -0.71 -16.63 5.15 -443.17 -2.28 -18.91 16 9 C 0.52 18.43 7.41 87.66 0.65 19.08 16 10 O -0.56 -26.06 15.75 -3.01 -0.05 -26.10 16 11 C -0.07 -2.50 5.19 29.10 0.15 -2.35 16 12 C -0.17 -7.55 4.43 -19.41 -0.09 -7.64 16 13 C -0.07 -2.82 9.66 22.22 0.21 -2.61 16 14 C -0.23 -8.81 10.05 22.46 0.23 -8.59 16 15 C -0.09 -3.98 10.02 22.22 0.22 -3.76 16 16 C -0.26 -13.07 7.17 22.73 0.16 -12.91 16 17 C 0.08 4.33 5.10 -21.29 -0.11 4.22 16 18 C -0.47 -26.95 8.56 23.46 0.20 -26.75 16 19 H 0.05 3.29 6.99 -2.91 -0.02 3.27 16 20 C 0.04 2.45 5.41 85.26 0.46 2.91 16 21 N -0.86 -49.84 13.93 21.83 0.30 -49.54 16 22 Si 0.97 44.96 24.52 68.60 1.68 46.65 16 23 H -0.27 -12.39 6.71 99.48 0.67 -11.72 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.25 -11.36 6.86 99.48 0.68 -10.67 16 26 C 0.50 15.08 7.71 87.99 0.68 15.76 16 27 O -0.51 -22.20 17.48 -2.83 -0.05 -22.25 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.84 7.82 -2.39 -0.02 1.82 16 30 H 0.07 1.80 7.83 -2.39 -0.02 1.78 16 31 H 0.17 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.16 0.61 7.66 -2.39 -0.02 0.59 16 33 H 0.42 6.24 8.31 -92.72 -0.77 5.47 16 34 H 0.09 3.37 7.15 -2.39 -0.02 3.35 16 35 H 0.13 3.09 8.05 -2.39 -0.02 3.07 16 36 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 37 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 39 H 0.09 4.43 4.74 -2.91 -0.01 4.42 16 40 H 0.29 15.19 8.30 -92.71 -0.77 14.42 16 Total: -1.00 -86.65 342.45 2.71 -83.94 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.26 Total: 21.77 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.19 Total: -7.87 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -4.29 Total: -84.33 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: -0.15 Total: -60.16 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.68 Total: 46.65 kcal Total: -86.65 2.71 -83.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848047890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.818 kcal (2) G-P(sol) polarization free energy of solvation -86.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds