Wall clock time and date at job start Tue Mar 31 2020 10:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46653 * 2 1 4 4 C 1.52999 * 109.47007 * 119.99439 * 2 1 3 5 5 C 1.50694 * 109.47391 * 295.00249 * 4 2 1 6 6 C 1.38364 * 119.84468 * 89.99970 * 5 4 2 7 7 C 1.37952 * 120.14850 * 179.69908 * 6 5 4 8 8 C 1.39628 * 119.84862 * 0.27863 * 7 6 5 9 9 C 1.43197 * 120.15234 * 180.02562 * 8 7 6 10 10 N 7.49814 * 80.07443 * 67.71577 * 2 1 3 11 11 C 1.39640 * 119.69807 * 359.97438 * 8 7 6 12 12 C 1.37944 * 119.84566 * 359.97438 * 11 8 7 13 13 C 1.50700 * 109.47557 * 239.99939 * 2 1 3 14 14 O 1.20819 * 119.99917 * 240.00356 * 13 2 1 15 15 O 1.34224 * 119.99714 * 59.99408 * 13 2 1 16 16 C 1.45204 * 117.00119 * 180.02562 * 15 13 2 17 17 C 1.50699 * 109.47658 * 180.02562 * 16 15 13 18 18 O 1.21287 * 119.99695 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00123 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99945 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99832 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00034 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99892 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00170 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47470 * 89.99510 * 24 22 20 26 26 H 1.48495 * 109.47260 * 210.00148 * 24 22 20 27 27 H 1.48505 * 109.46913 * 330.00012 * 24 22 20 28 28 H 1.08999 * 109.47354 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47379 * 299.99943 * 1 2 3 30 30 H 1.09002 * 109.47219 * 60.00117 * 1 2 3 31 31 H 1.08996 * 109.47115 * 174.99753 * 4 2 1 32 32 H 1.09001 * 109.46904 * 55.00898 * 4 2 1 33 33 H 1.08002 * 119.92862 * 359.97438 * 6 5 4 34 34 H 1.08000 * 120.07526 * 180.29834 * 7 6 5 35 35 H 1.07997 * 120.07565 * 179.97438 * 11 8 7 36 36 H 1.07998 * 119.92827 * 180.02562 * 12 11 8 37 37 H 1.09011 * 109.46824 * 300.00523 * 16 15 13 38 38 H 1.08996 * 109.47362 * 59.99490 * 16 15 13 39 39 H 0.96999 * 120.00328 * 359.97438 * 19 17 16 40 40 H 0.97003 * 119.99652 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 6 0.4336 -0.2077 3.0977 7 6 0.0652 0.4967 4.2252 8 6 0.9114 1.4829 4.7359 9 6 0.5357 2.2177 5.9061 10 7 0.2375 2.8007 6.8343 11 6 2.1264 1.7487 4.1008 12 6 2.4828 1.0360 2.9748 13 6 2.0324 -0.7104 -1.2304 14 8 2.7270 -1.6927 -1.1195 15 8 1.7081 -0.2519 -2.4495 16 6 2.2269 -0.9863 -3.5896 17 6 1.7629 -0.3292 -4.8640 18 8 1.0635 0.6605 -4.8161 19 7 2.1253 -0.8413 -6.0568 20 6 1.7036 -0.2431 -7.2162 21 1 1.0808 0.6382 -7.1735 22 6 2.0776 -0.7707 -8.4460 23 7 1.6731 -0.1976 -9.5572 24 14 3.1555 -2.2946 -8.5198 25 1 2.2982 -3.5069 -8.5400 26 1 3.9856 -2.2547 -9.7504 27 1 4.0398 -2.3336 -7.3273 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.1262 -0.7994 1.2057 32 1 1.6054 -1.7197 1.2952 33 1 -0.2201 -0.9708 2.7017 34 1 -0.8756 0.2856 4.7119 35 1 2.7854 2.5104 4.4904 36 1 3.4223 1.2401 2.4829 37 1 3.3165 -0.9860 -3.5568 38 1 1.8628 -2.0132 -3.5565 39 1 2.6850 -1.6326 -6.0952 40 1 1.9339 -0.5662 -10.4157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848798531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:07 Heat of formation + Delta-G solvation = -73.264134 kcal Electronic energy + Delta-G solvation = -24229.797772 eV Core-core repulsion = 20395.753554 eV Total energy + Delta-G solvation = -3834.044218 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77413 -39.98760 -38.41398 -37.12456 -36.36071 -35.26233 -34.08526 -31.85476 -31.75713 -31.55658 -28.70269 -27.52992 -25.11278 -24.17731 -23.22542 -22.40007 -20.14645 -19.66453 -19.39851 -18.61430 -17.80531 -16.68300 -16.42539 -16.10146 -15.96945 -15.41520 -15.02409 -14.91127 -14.72680 -14.49118 -14.10377 -13.93921 -13.77799 -13.47947 -13.25617 -13.18485 -12.92168 -12.60077 -12.47800 -12.38601 -12.26457 -12.15581 -11.73334 -11.67812 -11.42946 -11.32008 -11.28606 -10.67263 -10.55794 -10.41082 -10.07059 -9.69812 -9.52047 -9.22384 -8.68986 -8.31497 -6.41278 -3.94290 0.25733 0.83673 2.17543 2.24593 2.40818 2.64119 2.96632 3.01370 3.10363 3.39437 3.43535 3.53143 4.01612 4.16149 4.28189 4.37903 4.43332 4.53443 4.61304 4.82368 4.85944 4.93006 5.05634 5.08964 5.21832 5.28999 5.35146 5.48039 5.50898 5.53436 5.55524 5.65324 5.71546 5.76989 5.79347 5.98986 6.08634 6.30533 6.48639 7.05466 7.42461 7.74445 7.98841 8.45614 8.81662 9.27769 9.63334 10.70961 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.038156 B = 0.001968 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.652505 B =14222.144348 C =14529.554665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.076 4.076 3 H 0.113 0.887 4 C -0.073 4.073 5 C -0.046 4.046 6 C -0.114 4.114 7 C -0.068 4.068 8 C -0.036 4.036 9 C 0.255 3.745 10 N -0.421 5.421 11 C -0.067 4.067 12 C -0.115 4.115 13 C 0.463 3.537 14 O -0.515 6.515 15 O -0.321 6.321 16 C 0.057 3.943 17 C 0.447 3.553 18 O -0.557 6.557 19 N -0.579 5.579 20 C -0.309 4.309 21 H 0.122 0.878 22 C 0.045 3.955 23 N -0.874 5.874 24 Si 0.879 3.121 25 H -0.269 1.269 26 H -0.274 1.274 27 H -0.268 1.268 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.373 0.627 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 -3.261 24.972 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.095 4.095 3 H 0.131 0.869 4 C -0.111 4.111 5 C -0.047 4.047 6 C -0.132 4.132 7 C -0.088 4.088 8 C -0.040 4.040 9 C -0.060 4.060 10 N -0.096 5.096 11 C -0.087 4.087 12 C -0.133 4.133 13 C 0.305 3.695 14 O -0.404 6.404 15 O -0.236 6.236 16 C -0.020 4.020 17 C 0.232 3.768 18 O -0.439 6.439 19 N -0.219 5.219 20 C -0.437 4.437 21 H 0.140 0.860 22 C -0.159 4.159 23 N -0.514 5.514 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.194 1.194 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.206 0.794 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.009 -1.959 26.188 26.281 hybrid contribution 1.147 -1.561 -0.723 2.068 sum 2.156 -3.520 25.465 25.797 Atomic orbital electron populations 1.21907 0.91584 1.03206 1.04193 1.20958 0.98832 1.01046 0.88642 0.86885 1.20608 1.02906 0.98518 0.89032 1.20086 0.93885 0.95124 0.95631 1.21089 0.96413 1.00403 0.95296 1.21186 0.98703 0.93497 0.95431 1.16014 0.97099 0.98529 0.92311 1.25763 0.93726 0.93471 0.93041 1.81274 1.07895 1.09265 1.11133 1.21184 0.94328 0.98558 0.94634 1.21069 1.00424 0.95719 0.96105 1.23692 0.77446 0.82922 0.85395 1.90651 1.36071 1.26106 1.87537 1.86559 1.68618 1.54428 1.13957 1.22755 0.99618 0.95683 0.83981 1.19196 0.86550 0.87526 0.83535 1.90605 1.40175 1.26755 1.86327 1.42039 1.46942 1.27494 1.05468 1.19425 1.30594 1.12681 0.80998 0.86003 1.25037 0.97713 0.98173 0.94946 1.69614 1.44231 1.39921 0.97592 0.86680 0.80850 0.83289 0.78684 1.19411 1.19944 1.19365 0.91910 0.90728 0.90306 0.89229 0.89364 0.84567 0.84900 0.84902 0.84625 0.89458 0.89445 0.79404 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.69 37.16 0.32 -0.88 16 2 C -0.08 -0.66 2.82 -91.77 -0.26 -0.92 16 3 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.07 -0.50 4.18 -27.89 -0.12 -0.61 16 5 C -0.05 -0.26 4.72 -104.53 -0.49 -0.75 16 6 C -0.11 -0.56 7.93 -39.64 -0.31 -0.87 16 7 C -0.07 -0.34 9.76 -39.17 -0.38 -0.72 16 8 C -0.04 -0.22 5.73 -106.93 -0.61 -0.83 16 9 C 0.26 2.11 15.33 -22.48 -0.34 1.77 16 10 N -0.42 -4.57 18.54 41.84 0.78 -3.79 16 11 C -0.07 -0.35 9.76 -39.17 -0.38 -0.73 16 12 C -0.12 -0.59 9.68 -39.64 -0.38 -0.97 16 13 C 0.46 6.04 7.26 36.01 0.26 6.31 16 14 O -0.51 -7.53 15.67 -18.74 -0.29 -7.82 16 15 O -0.32 -5.27 9.66 -45.89 -0.44 -5.72 16 16 C 0.06 0.97 5.94 36.01 0.21 1.18 16 17 C 0.45 10.01 7.86 -10.99 -0.09 9.92 16 18 O -0.56 -14.86 16.08 -14.11 -0.23 -15.08 16 19 N -0.58 -13.39 5.09 -10.97 -0.06 -13.45 16 20 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 22 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 23 N -0.87 -24.77 13.96 55.50 0.77 -24.00 16 24 Si 0.88 18.67 27.74 -169.99 -4.71 13.95 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.45 6.26 -51.93 -0.33 0.13 16 30 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 31 H 0.09 0.63 7.90 -51.93 -0.41 0.22 16 32 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.14 0.48 8.03 -52.49 -0.42 0.05 16 34 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 35 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.09 1.31 8.14 -51.92 -0.42 0.89 16 38 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 39 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 40 H 0.28 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -34.30 359.34 -6.34 -40.64 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.75 Total: 5.48 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -2.82 Total: 4.37 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 1.49 Total: -41.24 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.96 Total: -28.62 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.71 Total: 13.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.30 -6.34 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848798531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.620 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds