Wall clock time and date at job start Tue Mar 31 2020 10:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46895 * 2 1 4 4 N 1.46898 * 109.46792 * 240.00394 * 2 1 3 5 5 N 1.36605 * 111.00361 * 89.99829 * 4 2 1 6 6 C 1.34777 * 120.00343 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99631 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00058 * 179.97438 * 6 5 4 9 9 C 1.50698 * 109.46927 * 180.02562 * 8 6 5 10 10 C 1.37637 * 120.13328 * 264.99985 * 9 8 6 11 11 C 1.38610 * 120.25115 * 179.97438 * 10 9 8 12 12 C 1.38662 * 120.50078 * 0.02899 * 11 10 9 13 13 C 1.37595 * 120.24945 * 0.02562 * 12 11 10 14 14 C 1.40704 * 120.12208 * 84.73196 * 9 8 6 15 15 C 1.41393 * 120.24665 * 359.97438 * 14 9 8 16 16 H 1.07996 * 119.99758 * 333.90135 * 15 14 9 17 17 C 1.39952 * 119.99920 * 153.89974 * 15 14 9 18 18 N 1.30817 * 119.99956 * 343.71193 * 17 15 14 19 19 Si 1.86797 * 119.99651 * 163.71287 * 17 15 14 20 20 H 1.48495 * 109.47102 * 90.00226 * 19 17 15 21 21 H 1.48505 * 109.46943 * 210.00003 * 19 17 15 22 22 H 1.48500 * 109.47194 * 330.00031 * 19 17 15 23 23 C 1.52999 * 109.47012 * 120.00568 * 2 1 3 24 24 F 1.39898 * 109.46713 * 180.02562 * 23 2 1 25 25 F 1.39897 * 109.46771 * 299.99272 * 23 2 1 26 26 F 1.39897 * 109.47296 * 60.00014 * 23 2 1 27 27 H 1.08994 * 109.46722 * 299.99982 * 1 2 3 28 28 H 1.09008 * 109.46943 * 59.99420 * 1 2 3 29 29 H 1.08998 * 109.46840 * 179.97438 * 1 2 3 30 30 H 1.00900 * 111.00526 * 326.04566 * 4 2 1 31 31 H 0.97000 * 119.99691 * 359.97438 * 5 4 2 32 32 H 1.08997 * 109.46636 * 60.00523 * 8 6 5 33 33 H 1.08996 * 109.46994 * 300.00595 * 8 6 5 34 34 H 1.07999 * 119.87356 * 0.02562 * 10 9 8 35 35 H 1.07994 * 119.74901 * 179.97438 * 11 10 9 36 36 H 1.07998 * 119.87086 * 179.97438 * 12 11 10 37 37 H 1.07995 * 120.12964 * 179.97438 * 13 12 11 38 38 H 0.97000 * 120.00500 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 7 2.1828 0.1813 -2.2369 6 6 2.6269 -0.2635 -3.4291 7 8 2.8813 -1.4396 -3.5810 8 6 2.8063 0.7002 -4.5736 9 6 3.3085 -0.0447 -5.7835 10 6 4.6577 -0.0996 -6.0503 11 6 5.1223 -0.7846 -7.1622 12 6 4.2360 -1.4209 -8.0179 13 6 2.8829 -1.3783 -7.7714 14 6 2.4003 -0.6915 -6.6417 15 6 1.0126 -0.6471 -6.3743 16 1 0.6619 -0.5111 -5.3620 17 6 0.0936 -0.7794 -7.4215 18 7 0.4863 -0.6251 -8.6598 19 14 -1.6937 -1.1765 -7.0510 20 1 -2.4547 0.0862 -6.8735 21 1 -2.2732 -1.9493 -8.1789 22 1 -1.7740 -1.9821 -5.8060 23 6 2.0400 -0.7214 1.2492 24 9 3.4390 -0.7208 1.2494 25 9 1.5738 -0.0618 2.3914 26 9 1.5737 -2.0403 1.2491 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.4035 -1.4487 -1.4573 31 1 1.9790 1.1218 -2.1154 32 1 3.5284 1.4670 -4.2930 33 1 1.8505 1.1692 -4.8069 34 1 5.3570 0.3921 -5.3904 35 1 6.1825 -0.8221 -7.3640 36 1 4.6091 -1.9514 -8.8815 37 1 2.1944 -1.8742 -8.4394 38 1 -0.1505 -0.7171 -9.3856 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862315974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:36 Heat of formation + Delta-G solvation = -147.821110 kcal Electronic energy + Delta-G solvation = -26375.045361 eV Core-core repulsion = 21995.911370 eV Total energy + Delta-G solvation = -4379.133992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.23689 -47.78286 -47.65164 -39.69641 -37.78496 -36.66904 -33.64152 -33.18944 -31.74693 -29.48450 -28.65636 -26.76538 -26.15125 -24.89208 -22.29583 -21.11768 -20.91317 -19.54286 -18.80408 -18.54696 -17.75472 -17.33655 -17.12098 -16.26726 -15.47054 -15.21866 -14.78303 -14.59102 -14.50131 -14.20222 -14.11484 -13.90706 -13.85575 -13.80097 -13.57635 -13.52431 -13.18416 -13.11562 -12.60378 -12.30211 -11.84955 -11.71784 -11.60055 -11.29020 -11.12716 -11.00396 -10.73685 -10.64145 -10.42277 -9.49570 -9.40675 -9.28663 -9.17658 -8.07151 -7.31806 -7.30851 -6.75752 -4.36797 2.22759 2.74655 2.85745 3.03478 3.07307 3.11019 3.25166 3.26913 3.55391 3.73249 3.90093 3.98927 4.37763 4.50912 4.55516 4.64673 5.07954 5.19835 5.33083 5.56144 5.75199 5.93264 6.02679 6.28860 6.34349 6.40917 6.51662 6.78775 7.05775 7.28919 7.39405 7.41552 7.60489 7.70912 7.92284 8.04602 8.13013 8.29800 8.62924 8.87325 8.89341 9.00168 10.18323 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.003797 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.230620 B = 7371.638665 C = 8784.018366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.021 3.979 3 H 0.128 0.872 4 N -0.432 5.432 5 N -0.594 5.594 6 C 0.518 3.482 7 O -0.503 6.503 8 C -0.061 4.061 9 C -0.184 4.184 10 C -0.078 4.078 11 C -0.238 4.238 12 C -0.106 4.106 13 C -0.159 4.159 14 C 0.130 3.870 15 C -0.458 4.458 16 H 0.072 0.928 17 C 0.077 3.923 18 N -0.794 5.794 19 Si 0.902 3.098 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.263 1.263 23 C 0.469 3.531 24 F -0.171 7.171 25 F -0.183 7.183 26 F -0.179 7.179 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.355 0.645 31 H 0.398 0.602 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 5.144 15.136 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.091 4.091 3 H 0.145 0.855 4 N -0.158 5.158 5 N -0.344 5.344 6 C 0.305 3.695 7 O -0.373 6.373 8 C -0.103 4.103 9 C -0.186 4.186 10 C -0.097 4.097 11 C -0.258 4.258 12 C -0.125 4.125 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.487 4.487 16 H 0.090 0.910 17 C -0.140 4.140 18 N -0.420 5.420 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.187 1.187 23 C 0.414 3.586 24 F -0.152 7.152 25 F -0.165 7.165 26 F -0.160 7.160 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.177 0.823 31 H 0.236 0.764 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.811 4.263 14.935 15.637 hybrid contribution -1.861 0.244 0.269 1.896 sum -3.672 4.508 15.204 16.278 Atomic orbital electron populations 1.22601 0.92752 1.04808 1.04861 1.23058 0.96667 0.99845 0.89560 0.85456 1.61752 1.52105 1.05651 0.96260 1.45545 1.71356 1.08193 1.09347 1.21434 0.76085 0.90786 0.81166 1.90717 1.47019 1.17791 1.81735 1.20206 1.02950 0.96142 0.90967 1.19005 0.93198 1.07402 0.98989 1.20314 0.94104 0.98865 0.96400 1.20322 0.97038 1.08816 0.99574 1.20693 0.94285 0.99604 0.97883 1.21297 0.93505 1.02580 1.00434 1.17327 0.92434 0.87305 0.90172 1.19421 0.90674 1.44394 0.94247 0.90980 1.25864 1.01147 0.92415 0.94576 1.69810 1.36958 1.35188 1.00004 0.86425 0.82150 0.79345 0.79469 1.19614 1.20028 1.18656 1.20129 0.76084 0.77637 0.84786 1.93225 1.29077 1.96280 1.96640 1.93176 1.88653 1.80918 1.53730 1.93189 1.88400 1.37687 1.96724 0.90104 0.89885 0.90390 0.82284 0.76370 0.90232 0.88465 0.89618 0.89597 0.89546 0.86515 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 8.97 37.16 0.33 -1.07 16 2 C 0.02 0.19 2.69 -67.71 -0.18 0.01 16 3 H 0.13 0.88 7.66 -51.93 -0.40 0.48 16 4 N -0.43 -5.56 6.34 -4.67 -0.03 -5.59 16 5 N -0.59 -7.90 5.96 31.22 0.19 -7.72 16 6 C 0.52 9.54 7.51 -10.99 -0.08 9.46 16 7 O -0.50 -11.80 16.25 5.56 0.09 -11.71 16 8 C -0.06 -1.12 5.18 -29.04 -0.15 -1.28 16 9 C -0.18 -4.30 4.43 -103.91 -0.46 -4.76 16 10 C -0.08 -1.78 9.66 -39.66 -0.38 -2.17 16 11 C -0.24 -5.50 10.05 -39.29 -0.39 -5.89 16 12 C -0.11 -2.57 10.02 -39.66 -0.40 -2.96 16 13 C -0.16 -4.19 8.69 -38.87 -0.34 -4.53 16 14 C 0.13 3.39 5.56 -106.82 -0.59 2.80 16 15 C -0.46 -11.65 8.14 -37.74 -0.31 -11.96 16 16 H 0.07 1.76 6.67 -52.49 -0.35 1.41 16 17 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 18 N -0.79 -20.08 10.96 55.55 0.61 -19.47 16 19 Si 0.90 18.29 29.59 -169.99 -5.03 13.26 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 C 0.47 4.93 2.82 37.16 0.10 5.03 16 24 F -0.17 -2.15 17.24 2.25 0.04 -2.11 16 25 F -0.18 -1.77 16.80 2.25 0.04 -1.73 16 26 F -0.18 -2.09 16.72 2.25 0.04 -2.05 16 27 H 0.08 0.48 7.80 -51.93 -0.41 0.08 16 28 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.08 0.61 7.78 -51.93 -0.40 0.21 16 30 H 0.35 4.88 8.40 -181.36 -1.52 3.35 16 31 H 0.40 3.76 8.07 -185.15 -1.49 2.27 16 32 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 33 H 0.10 1.70 7.08 -51.93 -0.37 1.33 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.12 3.17 6.20 -52.49 -0.33 2.84 16 38 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -31.03 338.39 -8.41 -39.44 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.51 Total: 8.08 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -2.94 Total: -15.49 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.77 Total: -32.78 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.11 Total: -5.90 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.03 -8.41 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862315974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.383 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds