Wall clock time and date at job start Tue Mar 31 2020 10:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46895 * 2 1 4 4 N 1.46898 * 109.46792 * 240.00394 * 2 1 3 5 5 N 1.36605 * 111.00361 * 89.99829 * 4 2 1 6 6 C 1.34777 * 120.00343 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99631 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00058 * 179.97438 * 6 5 4 9 9 C 1.50698 * 109.46927 * 180.02562 * 8 6 5 10 10 C 1.37637 * 120.13328 * 264.99985 * 9 8 6 11 11 C 1.38610 * 120.25115 * 179.97438 * 10 9 8 12 12 C 1.38662 * 120.50078 * 0.02899 * 11 10 9 13 13 C 1.37595 * 120.24945 * 0.02562 * 12 11 10 14 14 C 1.40704 * 120.12208 * 84.73196 * 9 8 6 15 15 C 1.41393 * 120.24665 * 359.97438 * 14 9 8 16 16 H 1.07996 * 119.99758 * 333.90135 * 15 14 9 17 17 C 1.39952 * 119.99920 * 153.89974 * 15 14 9 18 18 N 1.30817 * 119.99956 * 343.71193 * 17 15 14 19 19 Si 1.86797 * 119.99651 * 163.71287 * 17 15 14 20 20 H 1.48495 * 109.47102 * 90.00226 * 19 17 15 21 21 H 1.48505 * 109.46943 * 210.00003 * 19 17 15 22 22 H 1.48500 * 109.47194 * 330.00031 * 19 17 15 23 23 C 1.52999 * 109.47012 * 120.00568 * 2 1 3 24 24 F 1.39898 * 109.46713 * 180.02562 * 23 2 1 25 25 F 1.39897 * 109.46771 * 299.99272 * 23 2 1 26 26 F 1.39897 * 109.47296 * 60.00014 * 23 2 1 27 27 H 1.08994 * 109.46722 * 299.99982 * 1 2 3 28 28 H 1.09008 * 109.46943 * 59.99420 * 1 2 3 29 29 H 1.08998 * 109.46840 * 179.97438 * 1 2 3 30 30 H 1.00900 * 111.00526 * 326.04566 * 4 2 1 31 31 H 0.97000 * 119.99691 * 359.97438 * 5 4 2 32 32 H 1.08997 * 109.46636 * 60.00523 * 8 6 5 33 33 H 1.08996 * 109.46994 * 300.00595 * 8 6 5 34 34 H 1.07999 * 119.87356 * 0.02562 * 10 9 8 35 35 H 1.07994 * 119.74901 * 179.97438 * 11 10 9 36 36 H 1.07998 * 119.87086 * 179.97438 * 12 11 10 37 37 H 1.07995 * 120.12964 * 179.97438 * 13 12 11 38 38 H 0.97000 * 120.00500 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 7 2.1828 0.1813 -2.2369 6 6 2.6269 -0.2635 -3.4291 7 8 2.8813 -1.4396 -3.5810 8 6 2.8063 0.7002 -4.5736 9 6 3.3085 -0.0447 -5.7835 10 6 4.6577 -0.0996 -6.0503 11 6 5.1223 -0.7846 -7.1622 12 6 4.2360 -1.4209 -8.0179 13 6 2.8829 -1.3783 -7.7714 14 6 2.4003 -0.6915 -6.6417 15 6 1.0126 -0.6471 -6.3743 16 1 0.6619 -0.5111 -5.3620 17 6 0.0936 -0.7794 -7.4215 18 7 0.4863 -0.6251 -8.6598 19 14 -1.6937 -1.1765 -7.0510 20 1 -2.4547 0.0862 -6.8735 21 1 -2.2732 -1.9493 -8.1789 22 1 -1.7740 -1.9821 -5.8060 23 6 2.0400 -0.7214 1.2492 24 9 3.4390 -0.7208 1.2494 25 9 1.5738 -0.0618 2.3914 26 9 1.5737 -2.0403 1.2491 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.4035 -1.4487 -1.4573 31 1 1.9790 1.1218 -2.1154 32 1 3.5284 1.4670 -4.2930 33 1 1.8505 1.1692 -4.8069 34 1 5.3570 0.3921 -5.3904 35 1 6.1825 -0.8221 -7.3640 36 1 4.6091 -1.9514 -8.8815 37 1 2.1944 -1.8742 -8.4394 38 1 -0.1505 -0.7171 -9.3856 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862315974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:35 Heat of formation + Delta-G solvation = -167.013264 kcal Electronic energy + Delta-G solvation = -26375.877596 eV Core-core repulsion = 21995.911370 eV Total energy + Delta-G solvation = -4379.966226 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.08957 -48.61352 -48.55604 -41.01936 -39.36750 -37.99744 -35.47294 -34.27058 -33.34698 -31.32206 -29.89922 -27.90980 -27.31750 -26.61601 -23.13390 -22.80935 -22.48242 -21.10732 -19.70545 -19.43255 -19.06746 -18.71810 -18.35695 -17.44683 -17.20170 -16.51493 -16.20273 -15.74726 -15.59622 -15.41376 -15.28587 -15.00494 -14.95394 -14.75513 -14.72079 -14.67392 -14.35718 -14.33024 -14.06687 -13.51302 -13.35185 -12.95170 -12.87609 -12.73046 -12.68984 -12.52426 -12.46373 -12.12181 -11.82433 -11.29299 -11.19268 -10.99537 -10.80538 -9.19474 -9.16143 -9.13966 -8.56934 -6.26590 0.98159 1.12831 1.37647 1.40797 1.48571 1.55682 1.82895 2.02588 2.20950 2.75988 2.81098 2.96490 3.07446 3.59231 3.71248 3.80031 3.87023 4.14042 4.42692 4.47047 4.52753 4.60096 4.65703 4.74475 4.84669 5.01334 5.08002 5.22226 5.30677 5.40067 5.58162 5.80725 6.06870 6.19244 6.23191 6.25441 6.44432 6.57359 6.77053 7.01687 7.14717 7.59981 8.39465 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.003797 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.230620 B = 7371.638665 C = 8784.018366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.028 3.972 3 H 0.156 0.844 4 N -0.453 5.453 5 N -0.568 5.568 6 C 0.521 3.479 7 O -0.563 6.563 8 C -0.060 4.060 9 C -0.188 4.188 10 C -0.090 4.090 11 C -0.244 4.244 12 C -0.118 4.118 13 C -0.195 4.195 14 C 0.098 3.902 15 C -0.481 4.481 16 H 0.076 0.924 17 C 0.036 3.964 18 N -0.827 5.827 19 Si 0.971 3.029 20 H -0.254 1.254 21 H -0.273 1.273 22 H -0.266 1.266 23 C 0.468 3.532 24 F -0.185 7.185 25 F -0.176 7.176 26 F -0.188 7.188 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.350 0.650 31 H 0.421 0.579 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.170 6.900 16.963 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.084 4.084 3 H 0.173 0.827 4 N -0.178 5.178 5 N -0.318 5.318 6 C 0.309 3.691 7 O -0.438 6.438 8 C -0.101 4.101 9 C -0.190 4.190 10 C -0.108 4.108 11 C -0.264 4.264 12 C -0.137 4.137 13 C -0.215 4.215 14 C 0.096 3.904 15 C -0.511 4.511 16 H 0.094 0.906 17 C -0.178 4.178 18 N -0.453 5.453 19 Si 0.792 3.208 20 H -0.178 1.178 21 H -0.198 1.198 22 H -0.191 1.191 23 C 0.412 3.588 24 F -0.167 7.167 25 F -0.158 7.158 26 F -0.170 7.170 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.263 0.737 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.405 6.088 16.803 18.034 hybrid contribution -1.577 -0.268 -0.202 1.613 sum -3.983 5.820 16.601 18.037 Atomic orbital electron populations 1.22584 0.91092 1.04750 1.06127 1.23168 0.97866 1.00380 0.86949 0.82692 1.61583 1.53240 1.06192 0.96816 1.45050 1.69208 1.09294 1.08205 1.21260 0.75768 0.89714 0.82389 1.90701 1.50114 1.20002 1.82969 1.20216 1.04281 0.96295 0.89283 1.19523 0.93338 1.06285 0.99883 1.20761 0.94620 0.98707 0.96690 1.20715 0.98268 1.08055 0.99321 1.20947 0.93845 0.99984 0.98878 1.21312 0.94279 1.04408 1.01465 1.17732 0.93613 0.88172 0.90932 1.19622 0.91033 1.45727 0.94699 0.90619 1.26667 1.05245 0.91748 0.94154 1.69884 1.38549 1.35966 1.00939 0.85374 0.77007 0.79530 0.78846 1.17831 1.19764 1.19072 1.20360 0.75423 0.77419 0.85609 1.93199 1.30373 1.96327 1.96755 1.93189 1.88457 1.80651 1.53460 1.93172 1.88421 1.38601 1.96811 0.88235 0.89148 0.91186 0.82832 0.73739 0.86350 0.87701 0.86448 0.86914 0.87941 0.88632 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.19 8.97 71.98 0.65 -1.54 16 2 C 0.03 0.43 2.69 44.92 0.12 0.55 16 3 H 0.16 1.50 7.66 -2.39 -0.02 1.48 16 4 N -0.45 -10.82 6.34 -168.67 -1.07 -11.89 16 5 N -0.57 -13.68 5.96 -173.53 -1.03 -14.72 16 6 C 0.52 18.44 7.51 87.66 0.66 19.10 16 7 O -0.56 -26.47 16.25 -3.03 -0.05 -26.52 16 8 C -0.06 -2.07 5.18 29.10 0.15 -1.92 16 9 C -0.19 -8.70 4.43 -19.40 -0.09 -8.79 16 10 C -0.09 -3.95 9.66 22.22 0.21 -3.73 16 11 C -0.24 -11.08 10.05 22.46 0.23 -10.85 16 12 C -0.12 -5.82 10.02 22.22 0.22 -5.59 16 13 C -0.20 -10.70 8.69 22.73 0.20 -10.50 16 14 C 0.10 5.21 5.56 -21.29 -0.12 5.09 16 15 C -0.48 -24.92 8.14 23.46 0.19 -24.73 16 16 H 0.08 3.71 6.67 -2.91 -0.02 3.70 16 17 C 0.04 1.80 5.16 85.26 0.44 2.24 16 18 N -0.83 -43.02 10.96 21.83 0.24 -42.79 16 19 Si 0.97 37.63 29.59 68.60 2.03 39.66 16 20 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 21 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 23 C 0.47 8.94 2.82 71.98 0.20 9.15 16 24 F -0.19 -4.39 17.24 44.97 0.78 -3.61 16 25 F -0.18 -2.99 16.80 44.97 0.76 -2.24 16 26 F -0.19 -4.23 16.72 44.97 0.75 -3.48 16 27 H 0.10 0.83 7.80 -2.39 -0.02 0.81 16 28 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.07 0.96 7.78 -2.39 -0.02 0.94 16 30 H 0.35 9.30 8.40 -210.55 -1.77 7.53 16 31 H 0.42 6.35 8.07 -215.49 -1.74 4.61 16 32 H 0.12 3.12 8.05 -2.39 -0.02 3.10 16 33 H 0.10 3.47 7.08 -2.39 -0.02 3.45 16 34 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 36 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.10 5.50 6.20 -2.91 -0.02 5.48 16 38 H 0.28 13.50 8.30 -92.71 -0.77 12.73 16 Total: -1.00 -69.94 338.39 3.09 -66.86 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -2.37 Total: 30.25 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 3.07 Total: -31.53 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -1.87 Total: -69.40 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 9 Polarization: -11.61 SS G_CDS: 2.28 Total: -9.33 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -69.94 3.09 -66.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862315974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.158 kcal (2) G-P(sol) polarization free energy of solvation -69.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds