Wall clock time and date at job start Tue Mar 31 2020 10:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47299 * 2 1 4 4 C 1.50702 * 109.46735 * 119.99349 * 2 1 3 5 5 N 1.28023 * 120.00129 * 239.72327 * 4 2 1 6 6 N 1.40097 * 120.00162 * 180.27948 * 5 4 2 7 7 C 1.38256 * 119.99993 * 180.02562 * 6 5 4 8 8 N 1.31066 * 119.95046 * 359.97438 * 7 6 5 9 9 C 1.35547 * 120.89812 * 179.97438 * 8 7 6 10 10 C 1.40175 * 120.01147 * 179.97438 * 9 8 7 11 11 C 1.37552 * 119.87247 * 179.97438 * 10 9 8 12 12 C 1.38761 * 120.47389 * 0.05514 * 11 10 9 13 13 C 1.37876 * 120.46819 * 359.94669 * 12 11 10 14 14 C 1.39024 * 120.00052 * 0.02682 * 13 12 11 15 15 N 1.38478 * 120.18525 * 179.97438 * 14 13 12 16 16 H 0.97005 * 120.42583 * 0.02562 * 15 14 13 17 17 C 1.35059 * 119.14412 * 179.70561 * 15 14 13 18 18 S 1.71202 * 120.37897 * 180.28872 * 17 15 14 19 19 C 1.52999 * 109.47329 * 239.99255 * 2 1 3 20 20 C 1.50696 * 109.47040 * 65.00117 * 19 2 1 21 21 H 1.08001 * 120.00062 * 0.02562 * 20 19 2 22 22 C 1.37884 * 119.99974 * 179.97438 * 20 19 2 23 23 N 1.31508 * 119.99667 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99887 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47253 * 90.00055 * 24 22 20 26 26 H 1.48491 * 109.47175 * 210.00248 * 24 22 20 27 27 H 1.48506 * 109.47011 * 330.00133 * 24 22 20 28 28 H 1.09001 * 109.47730 * 300.00696 * 1 2 3 29 29 H 1.09003 * 109.46931 * 60.00760 * 1 2 3 30 30 H 1.08997 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00299 * 60.00476 * 4 2 1 32 32 H 0.97000 * 120.00306 * 359.97438 * 6 5 4 33 33 H 1.08007 * 120.06156 * 0.02562 * 10 9 8 34 34 H 1.08007 * 119.75982 * 180.02562 * 11 10 9 35 35 H 1.07997 * 119.76720 * 179.97438 * 12 11 10 36 36 H 1.08004 * 120.00049 * 180.02562 * 13 12 11 37 37 H 1.08996 * 109.47162 * 185.00094 * 19 2 1 38 38 H 1.09001 * 109.47398 * 305.00281 * 19 2 1 39 39 H 0.97001 * 119.99427 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 7 2.7726 -0.0896 2.0706 6 7 3.2443 -0.7517 3.2116 7 6 4.0434 -0.0812 4.1190 8 7 4.3594 1.1736 3.9106 9 6 5.1411 1.8495 4.7877 10 6 5.4681 3.1910 4.5461 11 6 6.2611 3.8743 5.4384 12 6 6.7421 3.2449 6.5777 13 6 6.4310 1.9260 6.8319 14 6 5.6305 1.2169 5.9435 15 7 5.3161 -0.1081 6.1948 16 1 5.6509 -0.5500 6.9908 17 6 4.5320 -0.7752 5.3207 18 16 4.1174 -2.4120 5.6040 19 6 2.0400 -0.7214 -1.2491 20 6 1.6414 0.0567 -2.4765 21 1 1.0807 0.9743 -2.3757 22 6 1.9934 -0.4022 -3.7282 23 7 2.6765 -1.5192 -3.8508 24 14 1.4998 0.5628 -5.2496 25 1 2.5654 1.5424 -5.5818 26 1 1.3132 -0.3710 -6.3890 27 1 0.2285 1.2842 -4.9874 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.7713 -1.7443 1.4016 32 1 3.0097 -1.6802 3.3654 33 1 5.0973 3.6873 3.6614 34 1 6.5116 4.9080 5.2507 35 1 7.3642 3.7921 7.2705 36 1 6.8091 1.4437 7.7213 37 1 3.1263 -0.7996 -1.2054 38 1 1.6054 -1.7200 -1.2950 39 1 2.9244 -1.8418 -4.7314 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863125178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:33 Heat of formation + Delta-G solvation = 105.378771 kcal Electronic energy + Delta-G solvation = -22239.011274 eV Core-core repulsion = 18887.759215 eV Total energy + Delta-G solvation = -3351.252059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.70727 -38.35811 -37.44683 -36.16906 -34.73123 -32.69663 -31.55912 -31.09637 -29.20782 -27.00025 -26.37886 -24.57133 -23.79064 -23.29229 -21.76547 -19.91258 -19.44934 -19.01775 -18.73392 -17.12925 -16.43709 -16.21973 -15.92610 -15.91237 -15.63645 -14.99223 -14.53173 -14.32194 -13.79196 -13.36005 -13.15190 -12.94840 -12.59784 -12.54517 -12.23274 -11.90026 -11.78034 -11.53599 -11.15197 -10.93312 -10.76889 -10.44808 -10.25948 -10.18107 -9.97488 -9.70859 -9.65309 -9.22596 -9.10041 -8.47031 -8.37006 -8.17045 -7.55848 -6.01685 -4.03775 -0.59230 0.24155 1.00727 1.38478 1.95296 2.10330 2.43829 2.70380 3.32630 3.37548 3.39265 3.41756 3.47735 3.91439 4.01063 4.36864 4.45524 4.59435 4.76404 4.83502 5.21535 5.27107 5.34881 5.42750 5.48546 5.61570 5.82338 5.91770 5.94827 6.04956 6.08825 6.19907 6.33598 6.41977 6.75440 6.80628 6.96633 6.97105 7.46150 7.61502 7.71940 7.96256 8.34688 8.39901 9.01491 9.60007 11.09748 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.002714 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.466376 B =10313.995798 C =11490.713296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.038 4.038 3 H 0.081 0.919 4 C 0.114 3.886 5 N -0.250 5.250 6 N -0.537 5.537 7 C 0.439 3.561 8 N -0.466 5.466 9 C 0.125 3.875 10 C -0.068 4.068 11 C -0.107 4.107 12 C -0.095 4.095 13 C -0.122 4.122 14 C 0.053 3.947 15 N -0.513 5.513 16 H 0.436 0.564 17 C 0.284 3.716 18 S -0.532 6.532 19 C 0.033 3.967 20 C -0.515 4.515 21 H 0.060 0.940 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.273 1.273 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.408 0.592 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.019 0.981 38 H 0.022 0.978 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.068 8.699 23.149 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 H 0.100 0.900 4 C -0.101 4.101 5 N -0.052 5.052 6 N -0.261 5.261 7 C 0.171 3.829 8 N -0.190 5.190 9 C 0.008 3.992 10 C -0.089 4.089 11 C -0.128 4.128 12 C -0.116 4.116 13 C -0.144 4.144 14 C -0.055 4.055 15 N -0.125 5.125 16 H 0.280 0.720 17 C 0.028 3.972 18 S -0.393 6.393 19 C -0.005 4.005 20 C -0.554 4.554 21 H 0.078 0.922 22 C -0.144 4.144 23 N -0.534 5.534 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.198 1.198 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.254 0.746 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.104 8.900 22.778 25.466 hybrid contribution 0.163 -0.753 0.117 0.779 sum 7.267 8.148 22.894 25.364 Atomic orbital electron populations 1.21683 0.94219 1.01576 1.01199 1.20399 0.95522 1.00130 0.89877 0.90048 1.26886 0.91086 0.98182 0.93954 1.74652 1.12538 1.23650 0.94381 1.45570 1.48435 1.12978 1.19103 1.19224 0.90049 0.87847 0.85810 1.68508 1.16370 1.05495 1.28649 1.18523 0.96226 0.95275 0.89190 1.21085 0.96768 0.90824 1.00181 1.21212 0.96995 1.00693 0.93855 1.21096 0.99266 0.93629 0.97590 1.20672 0.99321 0.95352 0.99013 1.18978 1.03105 0.84446 0.98957 1.42995 1.38274 1.09518 1.21752 0.72017 1.24737 0.86135 0.97489 0.88876 1.93324 1.66341 0.95984 1.83677 1.19139 0.96568 0.95639 0.89194 1.21149 1.35199 1.08449 0.90586 0.92201 1.25006 0.95189 0.95052 0.99154 1.69961 1.38714 1.21122 1.23588 0.86591 0.78962 0.79768 0.82672 1.20694 1.21319 1.19788 0.94541 0.90658 0.93037 0.87746 0.74647 0.83366 0.84396 0.84584 0.84729 0.96271 0.95966 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.98 37.16 0.33 -1.86 16 2 C -0.04 -0.74 2.75 -91.77 -0.25 -0.99 16 3 H 0.08 1.65 8.11 -51.93 -0.42 1.23 16 4 C 0.11 1.97 9.66 -13.86 -0.13 1.84 16 5 N -0.25 -4.48 10.95 32.68 0.36 -4.12 16 6 N -0.54 -8.62 6.35 32.48 0.21 -8.42 16 7 C 0.44 6.67 7.80 -153.60 -1.20 5.47 16 8 N -0.47 -7.09 9.93 -8.55 -0.08 -7.18 16 9 C 0.12 1.49 6.58 -84.62 -0.56 0.93 16 10 C -0.07 -0.64 9.99 -39.11 -0.39 -1.03 16 11 C -0.11 -0.67 10.01 -39.64 -0.40 -1.07 16 12 C -0.10 -0.50 10.03 -39.52 -0.40 -0.90 16 13 C -0.12 -0.75 9.89 -39.42 -0.39 -1.14 16 14 C 0.05 0.50 6.62 -83.70 -0.55 -0.06 16 15 N -0.51 -4.87 5.41 -8.06 -0.04 -4.92 16 16 H 0.44 2.87 8.73 -40.82 -0.36 2.51 16 17 C 0.28 3.70 7.17 -12.53 -0.09 3.61 16 18 S -0.53 -7.95 29.53 -107.50 -3.17 -11.13 16 19 C 0.03 0.80 4.43 -27.89 -0.12 0.67 16 20 C -0.52 -13.75 8.41 -34.44 -0.29 -14.04 16 21 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 22 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 23 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 24 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.11 1.60 8.00 -52.49 -0.42 1.18 16 32 H 0.41 6.11 7.34 -182.60 -1.34 4.77 16 33 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 35 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 36 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -32.89 353.39 -12.02 -44.91 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.79 Total: 2.01 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -4.54 Total: -7.07 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 1.17 Total: -50.13 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -3.17 Total: -11.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.89 -12.02 -44.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863125178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.291 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds